CsaV3_6G038200 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G038200
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 21719485 .. 21719790 (+)
RNA-Seq ExpressionCsaV3_6G038200
SyntenyCsaV3_6G038200
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTAAAGAGAGATGATGATACTGTTTCTAAAGGGAGCTTAAAGAGAGAAATAAACCTCAAAAAGGGAATGAAATCAAATATTTTAAGGAAGAAAAAGAACCTCCACCATTACAACCCACCAGCCAAAGGTAAGGAAAGGAAAAGAAAGGAAAGGAAAGGAAAAGGATATCTTTCTTGCTTTTCCTCTCTCCTTCATTCCATTGTCATCATCATTCATATGGTTCGCTGTGCCGTGTGTCTTGCTTCAAAGATTCTTCTTTGGATTGTCTTTTCCTTTCCCCATCCAGACCCAAACCATATTTAA

mRNA sequence

ATGTTAAAGAGAGATGATGATACTGTTTCTAAAGGGAGCTTAAAGAGAGAAATAAACCTCAAAAAGGGAATGAAATCAAATATTTTAAGGAAGAAAAAGAACCTCCACCATTACAACCCACCAGCCAAAGGTAAGGAAAGGAAAAGAAAGGAAAGGAAAGGAAAAGGATATCTTTCTTGCTTTTCCTCTCTCCTTCATTCCATTGTCATCATCATTCATATGGTTCGCTGTGCCGTGTGTCTTGCTTCAAAGATTCTTCTTTGGATTGTCTTTTCCTTTCCCCATCCAGACCCAAACCATATTTAA

Coding sequence (CDS)

ATGTTAAAGAGAGATGATGATACTGTTTCTAAAGGGAGCTTAAAGAGAGAAATAAACCTCAAAAAGGGAATGAAATCAAATATTTTAAGGAAGAAAAAGAACCTCCACCATTACAACCCACCAGCCAAAGGTAAGGAAAGGAAAAGAAAGGAAAGGAAAGGAAAAGGATATCTTTCTTGCTTTTCCTCTCTCCTTCATTCCATTGTCATCATCATTCATATGGTTCGCTGTGCCGTGTGTCTTGCTTCAAAGATTCTTCTTTGGATTGTCTTTTCCTTTCCCCATCCAGACCCAAACCATATTTAA

Protein sequence

MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSCFSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI*
Homology
[Close]
BLAST of CsaV3_6G038200 vs. NCBI nr
Match: KGN48011.1 (hypothetical protein Csa_003481 [Cucumis sativus])

HSP 1 Score: 202.2 bits (513), Expect = 2.1e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60
           MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC
Sbjct: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60

Query: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 102
           FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI
Sbjct: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 101

[Close]
BLAST of CsaV3_6G038200 vs. ExPASy TrEMBL
Match: A0A0A0KJV3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G424020 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.0e-48
Identity = 101/101 (100.00%), Postives = 101/101 (100.00%), Query Frame = 0 

Query: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60
           MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC
Sbjct: 1   MLKRDDDTVSKGSLKREINLKKGMKSNILRKKKNLHHYNPPAKGKERKRKERKGKGYLSC 60

Query: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 102
           FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI
Sbjct: 61  FSSLLHSIVIIIHMVRCAVCLASKILLWIVFSFPHPDPNHI 101

The following BLAST results are available for this feature:
BLAST of CsaV3_6G038200 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48011.12.1e-48100.00hypothetical protein Csa_003481 [Cucumis sativus][more]
BLAST of CsaV3_6G038200 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G038200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KJV31.0e-48100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G424020 PE=4 SV=1[more]
BLAST of CsaV3_6G038200 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..53

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G038200.1CsaV3_6G038200.1mRNA