CsaV3_6G037620 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G037620
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 21296034 .. 21296394 (-)
RNA-Seq Expression	CsaV3_6G037620
Synteny	CsaV3_6G037620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CAAAAAATCCCACCTTTTCCCAAATCATCAGATACTCAATAACTTTGCATGCAAATCTTCTCATAGCACCACTTTTTTTCTCCTTCAATGGCACTTCGTTTCAACAAAATACTTGCTCCTCCATTGATGGCTGTTCTTTTCATGGCCATGCTTGTCACGGCAGCAACCGACCCCCATGCAACGGCGCTGCTGTGGACAGTGGAGGAGGCTACTGAAAGAATCAGCAGCAGCAGCAATATGGTAATGCGAAAGTTTGGTTATAGCAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCCTCTACTGAAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCAACCACCTC

mRNA sequence

ATGGCACTTCGTTTCAACAAAATACTTGCTCCTCCATTGATGGCTGTTCTTTTCATGGCCATGCTTGTCACGGCAGCAACCGACCCCCATGCAACGGCGCTGCTGTGGACAGTGGAGGAGGCTACTGAAAGAATCAGCAGCAGCAGCAATATGGTAATGCGAAAGTTTGGTTATAGCAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCCTCTACTGAAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCAACCACCTC

Coding sequence (CDS)

ATGGCACTTCGTTTCAACAAAATACTTGCTCCTCCATTGATGGCTGTTCTTTTCATGGCCATGCTTGTCACGGCAGCAACCGACCCCCATGCAACGGCGCTGCTGTGGACAGTGGAGGAGGCTACTGAAAGAATCAGCAGCAGCAGCAATATGGTAATGCGAAAGTTTGGTTATAGCAAAAGGCAAATGGAACATTTAAGAAGACTTTCTTCTTCCTCTACTGAAAGATATATTCCTGGAGGGCCTGATTCTCAACATCATTCCCAACCACCTC

Protein sequence

MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQMEHLRRLSSSSTERYIPGGPDSQHHSQPPX

Homology

[Close]

BLAST of CsaV3_6G037620 vs. NCBI nr
Match: KAE8647339.1 (hypothetical protein Csa_003556, partial [Cucumis sativus])

HSP 1 Score: 174.9 bits (442), Expect = 3.3e-40
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60
          MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK
Sbjct: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60

Query: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPP 92
          RQMEHLRRLSSSSTERYIPGGPDSQHHSQPP
Sbjct: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPP 91

[Close]

BLAST of CsaV3_6G037620 vs. NCBI nr
Match: KAA0061638.1 (hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa] >TYK05869.1 hypothetical protein E5676_scaffold1465G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 1.9e-32
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60
          MALR N+ILA PLMAVLFM MLVTAA D HATAL WTVEEATERISSS NM+MRKFGYSK
Sbjct: 1  MALRSNRILA-PLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSK 60

Query: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPP 92
          RQMEHLRRLSSSST RYIPGGPDSQHHSQPP
Sbjct: 61 RQMEHLRRLSSSSTARYIPGGPDSQHHSQPP 90

[Close]

BLAST of CsaV3_6G037620 vs. NCBI nr
Match: KAG6589262.1 (hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 99.8 bits (247), Expect = 1.3e-17
Identity = 61/89 (68.54%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 3  LRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSKRQ 62
          LRF+  LA P MAVLF+ ML+      HAT   WT EE TE  SSSS M+MRKFGYSK Q
Sbjct: 4  LRFSSKLA-PFMAVLFIGMLLVTVAGRHATP-PWTTEEVTE--SSSSIMIMRKFGYSKTQ 63

Query: 63 MEHLRRLSSSSTERYIPGGPDSQHHSQPP 92
          MEHL+RL SSSTERY PGGPDSQHHS PP
Sbjct: 64 MEHLKRL-SSSTERYTPGGPDSQHHSHPP 87

[Close]

BLAST of CsaV3_6G037620 vs. NCBI nr
Match: KAG6572409.1 (hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 88.6 bits (218), Expect = 3.1e-14
Identity = 57/93 (61.29%), Postives = 63/93 (67.74%), Query Frame = 0


Query: 4  RFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATE-----RISSSSNMVMRKFGY 63
          RFN   A PL AV+FM MLVTAA   HA  L      A E       SSSS+M+MR+ GY
Sbjct: 7  RFNPKFA-PLTAVIFMVMLVTAAAGRHALPLRTEEAAAIEGGGGSSSSSSSSMIMRRLGY 66

Query: 64 SKRQMEHLRRLSSSSTERYIPGGPDSQHHSQPP 92
          +K QMEHLRRL SSST RYIPGGPDSQHHS+ P
Sbjct: 67 TKSQMEHLRRL-SSSTARYIPGGPDSQHHSRSP 97

[Close]

BLAST of CsaV3_6G037620 vs. ExPASy TrEMBL
Match: A0A0A0KGI4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 1.6e-40
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 0


Query: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60
          MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK
Sbjct: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60

Query: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPP 92
          RQMEHLRRLSSSSTERYIPGGPDSQHHSQPP
Sbjct: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPP 91

[Close]

BLAST of CsaV3_6G037620 vs. ExPASy TrEMBL
Match: A0A5D3C664 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00250 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 9.3e-33
Identity = 81/91 (89.01%), Postives = 83/91 (91.21%), Query Frame = 0


Query: 1  MALRFNKILAPPLMAVLFMAMLVTAATDPHATALLWTVEEATERISSSSNMVMRKFGYSK 60
          MALR N+ILA PLMAVLFM MLVTAA D HATAL WTVEEATERISSS NM+MRKFGYSK
Sbjct: 1  MALRSNRILA-PLMAVLFMVMLVTAAADRHATALPWTVEEATERISSSRNMIMRKFGYSK 60

Query: 61 RQMEHLRRLSSSSTERYIPGGPDSQHHSQPP 92
          RQMEHLRRLSSSST RYIPGGPDSQHHSQPP
Sbjct: 61 RQMEHLRRLSSSSTARYIPGGPDSQHHSQPP 90

The following BLAST results are available for this feature:

BLAST of CsaV3_6G037620 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647339.1	3.3e-40	100.00	hypothetical protein Csa_003556, partial [Cucumis sativus]	[more]
KAA0061638.1	1.9e-32	89.01	hypothetical protein E6C27_scaffold212G00060 [Cucumis melo var. makuwa] >TYK0586...	[more]
KAG6589262.1	1.3e-17	68.54	hypothetical protein SDJN03_17827, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6572409.1	3.1e-14	61.29	hypothetical protein SDJN03_29137, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_6G037620 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G037620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGI4	1.6e-40	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G419510 PE=3 SV=1	[more]
A0A5D3C664	9.3e-33	89.01	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_6G037620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..91
None	No IPR available	PANTHER	PTHR36016:SF9	SUBFAMILY NOT NAMED	coord: 1..91
IPR039617	CLAVATA3/ESR (CLE)-related protein	PANTHER	PTHR36016	CLAVATA3/ESR (CLE)-RELATED PROTEIN 7	coord: 1..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G037620.1	CsaV3_6G037620.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment