CsaV3_6G037220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G037220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 20945016 .. 20947667 (+)
RNA-Seq Expression	CsaV3_6G037220
Synteny	CsaV3_6G037220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCGCCAATTCCTTGCCGTTTCAGAAAAAGAAAAACAATCAAATGTGTTGAAGAATCGAAGCAATGTCATCCATCGTTATTCGTTATGCTTTGAGGATTTTTACTCACGTCGCATTCCCAAGAACCAAGAAGAAAACAAGACAAGAACCACTCGAAATGGGTCTGAATGAAAATACAATCCCAACCCATTTTGTGTTTGTCTTCTTCCCCAACCCCTCTCTGTTTCTTTAATCATAAAAATATTTTCTTGTTTCCCATATCCCAATACCCCAGATTGTCGAACACTTAGCCGTATCAATTGAAACTGCCACACAGAGACAGCCAACAATGCCAACCCATTTCAGATGGAACTCTCACTGTGGGCTTCACATGCCTCCCATTTCCATATCACTACTGGTCAGTGCTTATCGAATCCATTGATTTTGTTCTTACATTCTTTCTGTCGTTTCCTTAACCATTTTGTGGTTAACACTTGCTTATACAATTTCTGATTTGCCATTCTGATTGTTAATTTAGATAACAATCTCTTCATTCTTTGAATATAAGATGTTGAGTTGTGTAGATTTATGCTGGAATTATACTGTCTACAATAACATCCTATTATATCTAGACAAACCCAATACTAGATCTTGTTGTCTTTACTCAACATTGACTACTCAAAAGATATATGACTAGATAACATTCTTATATGAAGTGGTATTAGCACTATATTGGCTTTGTGATTACGTCATCTTTGTTTTAAAAATGAAATCAATCATATCAACCTCCAGATTTGCAACTTCTGAATTAGATATTTTGGGTAATTGGTCTTTTGTTGATAACAATTCATATGTCTCGATCAATGTGGTAATCAGCACTATGGGGGAGAAGAGATTCGATAGGGAGGGTGAGAATAAAAGTGCACCGAATCCCACAGTTACTCTGTAGATGTATTGAGATTATATTAAATGAATTAACATCTGAAACTTTTGGTGAATTGATTTGGATGACAAGATATTAGAAGTTCAGATTCCTAAATTATCATTTTTCTTCTTTATTTGATTTGATAGAAGAGTATTGAAAATATATTGAACTTGATCATTCGTCTGACAACTTAGATCCCTTTTTCTATTTTTGAGAATCATGCTTCTTTTCTTATATTTCTTTATTATGACGTTGAAAACATTACAGCTCATTTAAAAAAAAAACCAAATTCTTAAAAAAAAAAAATTTCTAGCTTCCCGAATTTGTTTGGATATTGAAACAAAATTTAAAATAAAAATTACAAGACAAAGAAACTTATGGAAACTTAGAGAATGAATGAATATTTGTAAGCTTAATTTTCAAAAACCAAAAACCAATTAGTTATGAAAGGTACTTTATTTAAGAAGACTCAGATGATCAATTTGATGAAGGGATCAATAGTCTTTGACTCACCATAATATAGTTTTTAGTTTCAAAGTGAAGAGTCATGAGATTTTTTTGTTTGTTATCTCGAAAATTTTATTTTAAAAAATTATGCTTTTTTTTCATACGACATTCAAATTTTGTATTTAAACTAACTTTTTAGTTTTAAGTTTTGGCTTATATTTCCAAAATACTCCTAAAATGTGGCAACAAAATATAATAGTTAGTGGATAGAAGTGGTAGTAAACAAACCGGTCTTAGTTTAAGCTCTACAGTTGTTAGTAGCACCTTCTCCACTGGTGCATACTTTGACTTTCTACTCCATTTTGCAGGAGAAACTTCAAATCAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGGGAGGTACTAATTCCATTGTACTTAATAGTAAAAATGAAAGGAAAGAAGTTTGTAGGAGGGAATACCAAGGATATGTTCAATGCTATTTTCCACATTCGGAAGCCTAATCTGAAAGAATATATCTGAATTTATGTGTATATATGAATTTATAGGTTTTGAGAAATTCCATTTAACCCAAACACTTCACGTGTTTGTGTGTGACACCTTGTCTGCCATTGTTTCATAAGGTAGACTGTAAACAGGAAAAAACTATTACAACAGAATAATTAGAAAAAAACTCCCCTTCCAAACAATTCTATGTGGTTTGCAAAACAAATCTCCACTATCTATTATATTACTGCAACATACAATCTACCTTATCCTATCGACTACTAGCCCCAATTCTTTAGAAGCAATTCGAATCAATATGGATTGATCGAGTTGTCTCACATTAAATCGCTGTCAAAGCGGCAATGATTTGGGATATAAAGATGATGTTTTCTTTTTATTAACAGACGAAAATTGGACCAAAGTTTGTGTGTTCCATGTGGTGAAAGGATATACAAAAATTGACAATACATCATGGCTGTGGCTGTGGTGTGTGGCTAGGCTAGCTAGGATCAGAACACTTTTTCAAATAGGACCTTGGCAATGTGGTAGTTGATAGTCCAAGGATCGAAATAGGCTGCATAATACAGACTTTTTGCTACCGTTAGAAATGTGTGCTTGATTTGTGAGTTAATAATATCATTGCTATCTGAGGGGTTTTGGATCACCAGTTGCATAAGTTTCCTCATGTCATCTTCTATCTCTTGGGGCATTTTGTTGTCTGTTTTCTCCTTATAGATGCCACCATTGG

mRNA sequence

ATGCCAACCCATTTCAGATGGAACTCTCACTGTGGGCTTCACATGCCTCCCATTTCCATATCACTACTGGAGAAACTTCAAATCAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGGGAGGTACTAATTCCATTGTACTTAATAGTAAAAATGAAAGGAAAGAAGTTTGTAGGAGGGAATACCAAGGATATGTTCAATGCTATTTTCCACATTCGGAAGCCTAATCTGAAAGAATATATCTGA

Coding sequence (CDS)

ATGCCAACCCATTTCAGATGGAACTCTCACTGTGGGCTTCACATGCCTCCCATTTCCATATCACTACTGGAGAAACTTCAAATCAAAAAGGCACATCGAAGCTCAACCACAAACCTAGTCAACCTAACTGTGTATTGGGAGGTACTAATTCCATTGTACTTAATAGTAAAAATGAAAGGAAAGAAGTTTGTAGGAGGGAATACCAAGGATATGTTCAATGCTATTTTCCACATTCGGAAGCCTAATCTGAAAGAATATATCTGA

Protein sequence

MPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVNLTVYWEVLIPLYLIVKMKGKKFVGGNTKDMFNAIFHIRKPNLKEYI*

Homology

[Close]

BLAST of CsaV3_6G037220 vs. NCBI nr
Match: KAE8647328.1 (hypothetical protein Csa_003768 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 8.0e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVNLTVYWEVLIPLYLIVKMKG 60
          MPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVNLTVYWEVLIPLYLIVKMKG
Sbjct: 1  MPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVNLTVYWEVLIPLYLIVKMKG 60

Query: 61 KKFVGGNTKDMFNAIFHIRKPNLKEYI 88
          KKFVGGNTKDMFNAIFHIRKPNLKEYI
Sbjct: 61 KKFVGGNTKDMFNAIFHIRKPNLKEYI 87

[Close]

BLAST of CsaV3_6G037220 vs. ExPASy TrEMBL
Match: A0A0A0KGC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410640 PE=4 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 3.9e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1   MPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVNLTVYWEVLIPLYLIVKMKG 60
           MPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVNLTVYWEVLIPLYLIVKMKG
Sbjct: 78  MPTHFRWNSHCGLHMPPISISLLEKLQIKKAHRSSTTNLVNLTVYWEVLIPLYLIVKMKG 137

Query: 61  KKFVGGNTKDMFNAIFHIRKPNLKEYI 88
           KKFVGGNTKDMFNAIFHIRKPNLKEYI
Sbjct: 138 KKFVGGNTKDMFNAIFHIRKPNLKEYI 164

The following BLAST results are available for this feature:

BLAST of CsaV3_6G037220 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647328.1	8.0e-44	100.00	hypothetical protein Csa_003768 [Cucumis sativus]	[more]

BLAST of CsaV3_6G037220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G037220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGC8	3.9e-44	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G410640 PE=4 SV=1	[more]

BLAST of CsaV3_6G037220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G037220.1	CsaV3_6G037220.1	mRNA