CsaV3_6G037100 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G037100
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 20873776 .. 20877912 (-)
RNA-Seq ExpressionCsaV3_6G037100
SyntenyCsaV3_6G037100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTAAACTTAAATAATCCAGACCACAAACACATACTATTATAACCCAAACTAAAATAATCTACATCCCAAACACAAACTATTATAACTCCTTACCCCAAACACCCTCTTAAGGAGTAAAGTACCCTAAACTATTGTTTGTATAACTATTAATTTTCTTTTTCCTCCTTATTCTTTTGTTTTATTATATGCTCTAACTAGTGATGCTTTCTTTTTGAATAATTGCAAATGCTTCGTTATTTGATTCATTAGCTTTCTATGATTTTCAACAATTGAAAGGTCCTTATTCTTTAGTTTCTCTTGGGGAGGGTCCTTTTGTCCCTTGCTCTTAGGCTGTTTATCTTTTGCTCATTGAATATATCTGTTTCTTATAAAAAAAAGACTTCTCGTATAAGACAACCTTAATCTTTAGACATTACTTGGCCACTTTTCTTAATACATTACTTGGCCACTTTTCTTATAACAATTTGATTTTTTTTAATAGGATGCACTTTTTATTGAAATAATGAAAAGAGACCGTCTCAATGTACAAAGTACAAAGGATTTAGTACGAAGAACATGGGAGGATCAACAGGCACACCCTGGTATTTAGGTTGACATTCCCTTAGTCCCCACATCACATCTAAAAAAAATACACGTAAAGAAATAAAAGGACAATATGTGGGCTAACAAAGTCCGATATTCTATCATATGTTGTAAAGGCCGTATGGTGGCCTTCTTTGACTGGTCTTTTCTTAGTTTTGTTTGGATATGATGAGGAAGCTAAAGGGATGTCAACCTAGTTGAGATATTTGAGTGGGTCTGTTAATCCTATTTCTTTTGCTCATTGTATAAACCTCTTGTACTATGAGCTTTAGTCTCATTTATTAATAATAAATATCATGGAAAACCCTCTAATTTCTTTAAAACCATAACTCCACTAACAAGGCCTTGACTGCATTTCACATCAAGTAAGCTTTCTTCTTTAGGGCTGGACCAACATGTATTTGCAGCACATTGTTCTTACAGCCATTATAAAAAACTCAAACACGATTTTTTTTGAAAAGGAGGCGAGTCTCCAATTTTATTAATAAAATCGAGAATAATGCTCAAAATATAAGAGAATTATATAGAGAGCACACAAAAAGAGAGGCTGAAGATCAGTAGGCACACCCGGACATAACAACTAGCTTGACACCTCCTTAGCATCCTCCTCATCTCCTCCTAATAACTAGCATTAAAACGAACAATCAAATACTTGCCAAATCTGCCCCATCCCATACCAAGAGTTCTGAAAAAAAACGAAAGAATACAAGGCATACAAAAAAGAAAAAAAACCAGCCCACCAAAACACACCGACTAAAAGTAGGGGGTCAAATTGAGTAAAATGTTACCAATGGAATAATTACAAAAAGTTTTCAAAATAGAAACCCAAAGGGATATATGAAATCTAATCAAAGATCAAACCTCACTATGATCCCTTTCCCTACCACGAAACACCCGATTGTTCTTTCCTCCCAAATATCTCATGAAAAGCATACACCCCTGCAAGCCATAAAAATCTCCCCTTTTCTCTGAAGGGCGGATGGAGGAGAAACTCCTCGATCGTTGCACGAATGCCCTGATGGTCATGGTCAACATCGGACTTCTGCAGAAAAAAGCTGTACACAGCTCATGCATACTGGCTATCCCAAAAAGGTGATCAAGGTTTTCCTTCGCCTTCTGACAAAGCATGCAGCAAAAAGGCCCAACAAGTGAAGTCCGCCTCCTAACAAGCCTATCAACAATGTTAATTTGACCAAGAAAAACTTGCCAGATGAAGAACTTAAATTTCTTAGGAACCTTGGTCCTCCAGACCACATAAAAAACAGACTCCTTAGGAGGGGAGGGATCCAACAACGGACTGAAAAAGGATTTACACGTATATGTCTGACTCGGATTGGGACTCCAAACACATATGTTCCACCTTCCCTCTCTAAAATTGCACCTCTCAACCGAAGAAATAAGAGAGGCAATCTCCACCGTTTCTCTATTGGTCAAATTACGATAGAACTTGAAAGACAAGTATGTAAAATTATTGGATCTAACCAAAAGATTCGATATCATATAACGTTTGGAAGAGGATAAATGATAAGAATGTAGAAATGAAGAATAAAGGGAAGACTCCCTCACCTATTCATCTCATCCTCCCAAAAATACGTATGCTTACCGTCTCCCACAAAACAACGAATTAACTTGGAAAAGATTGGAAGCTCGAAAGAGATATTCTTCCAAGGATTACGGTGTGTGCCTTTTAAGCCTTTCACCGCCCATTCAAAAGGATGAGTTCCATGCTTACTCACAATAATCCTATGCCATAAAGAATTGGGCTCAAGGGAAAAGCACCGAAGCCACTTGGCCAACAAAGCTTTGTTGTGGATTCTAAGATTATCGATCTCTAAACCCCTTGACTCATAGGGCGCCCCATCGCATCCCAATTGACTAAGTGAGATCCATGACCTTCCTCCACCCTTTCCCACAAAAAATCTTTCATATACTTTTCCATGCTCTTGCACTCCTAGCTAGGGGCCTTAAAGAGAGATAAATACTACCCTGGGATCCCTTTTCAAATAAAGAGGCTGTCTCCTTTTCACAAAAATAATACTGTGGGATCCCTCCCTCTCAGCACCAATGTAATCAAGATTAACTTGCTAGCTTTCGAGAAGAATCTTTTCTTCCACATCGCCAATCTCTTATGAATTTTCTTAGAAACAAGATCCCAGAAGGTCAAAGCTCTTGGGTTTCCACCCAGGGTAAGCCTGAGATACGAAGAAGGGAAAAAGCCAACCTCGTAATCAAACACCTTCGCCCCACCTTTGCAACTTAACTTGATTAGTGTTAATTCAAAAAATAGTTGCTCCTATTGATTTTTAACCCAGACATATCTTCAAAGAAAGCCACCATATGGTTGAGAATGAGGAAGGACTCCTCTTTTCCAAAACAAAATAATATTGGATCATCTACGAATTGAGGATGCAATAAAGTGACTTCATTCCTCCCGATCCTAAAAGAATCAATAATGTTTCCTTCCACCCCTTTATAAATGATCCAACTTAAGATATCCACCACAAGTAAGAACCTGAAAGGAGACAGAGGATCCCTTTGTCTTAAACCTGGTGGCTTGAATCAACCTTTTAGGGTTCCATTAACGAGCATAAAATACTTCACATTCCCCACACACCTCCACATCCACATTCACATCCTCCATTGATAACTTTAACCTTTTTTCATCAGCACATTATCCAAAAAAATCCCAATCCACATGGTCATACGCCTTTTCAACATCAAGCTTTAGCATTTGACCTTTTTGTTTCCTCGACCTATATTCCTTAATGGCTTCATAGCTATAAGAGCTTGTTTCAAAATCTGCCTTCTCACCACAAAGGCACCCTGGGCCTTGGAAATAGTAGATGACATAACTTCCCTTAACTGATTAGCAAGAACCTTAGCTAGAATCCAAGCACCAAAATTCAGAATCGCGTGGAGAAGTGGAAAAGTCACGCGTGAATGAAAGATTAATGAAACCTTGGAAGAAAGAGAAAATTGAACATTGACCCCCCGAAGCCAACCTGACGATTGTTGTCCGAAAGAATCCAATGGCTTAATTATGATTGGCTCTAATGTTGGGCCCCACAAATGCAATCAATGAAGTGGGGCCTAGCTTTTGTTATGCAAATGGGGAAGAGGAAGAGCCAATGACCGCAATTGCGGCTTGGGACGAATTCTCTTTTCCTCCTTCGGTTGTGTTCCAACCGATTAAACCTTTGGAAAACAAAAAGAAAGAGTCCTCTGCTCAATTAGTTAAGAAGGGCCACCAGAGATGCAAGACTACGCAAAAATTCTATATAAAAGGGAGAACATCATTTGACAATGCCTCGACGACTTTAATGAATTCTGATCTACCATAAGAAAGCTGTGTGAAAATACAAACATCCGGTATAGAATGCAACAGGTCTGTAAAGACACCCCATTCTATTTCAAACTTCTCATTTCAAAATATCGTCAATAATCGATGCAAGCAGTGAAGAGTTGGAGTTTGAGCACCCTGAGGAGTTGGAGGAACAACAATCTGATCGAGAGGAGGCTGAGAATTTCGAAGCATTAGGGCCATATTTCCCCAA

mRNA sequence

ATGTTGGGCCCCACAAATGCAATCAATGAAGTGGGGCCTAGCTTTTGTTATGCAAATGGGGAAGAGGAAGAGCCAATGACCGCAATTGCGGCTTGGGACGAATTCTCTTTTCCTCCTTCGGTTGTGTTCCAACCGATTAAACCTTTGGAAAACAAAAAGAAAGAACACCCCATTCTATTTCAAACTTCTCATTTCAAAATATCGTCAATAATCGATGCAAGCAGTGAAGAGTTGGAGTTTGAGCACCCTGAGGAGTTGGAGGAACAACAATCTGATCGAGAGGAGGCTGAGAATTTCGAAGCATTAGGGCCATATTTCCCCAA

Coding sequence (CDS)

ATGTTGGGCCCCACAAATGCAATCAATGAAGTGGGGCCTAGCTTTTGTTATGCAAATGGGGAAGAGGAAGAGCCAATGACCGCAATTGCGGCTTGGGACGAATTCTCTTTTCCTCCTTCGGTTGTGTTCCAACCGATTAAACCTTTGGAAAACAAAAAGAAAGAACACCCCATTCTATTTCAAACTTCTCATTTCAAAATATCGTCAATAATCGATGCAAGCAGTGAAGAGTTGGAGTTTGAGCACCCTGAGGAGTTGGAGGAACAACAATCTGATCGAGAGGAGGCTGAGAATTTCGAAGCATTAGGGCCATATTTCCCCAA

Protein sequence

MLGPTNAINEVGPSFCYANGEEEEPMTAIAAWDEFSFPPSVVFQPIKPLENKKKEHPILFQTSHFKISSIIDASSEELEFEHPEELEEQQSDREEAENFEALGPYFPX
Homology
[Close]
BLAST of CsaV3_6G037100 vs. NCBI nr
Match: KAE8647325.1 (hypothetical protein Csa_003007, partial [Cucumis sativus])

HSP 1 Score: 218.8 bits (556), Expect = 2.3e-53
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0 

Query: 1   MLGPTNAINEVGPSFCYANGEEEEPMTAIAAWDEFSFPPSVVFQPIKPLENKKKEHPILF 60
           MLGPTNAINEVGPSFCYANGEEEEPMTAIAAWDEFSFPPSVVFQPIKPLENKKKEHPILF
Sbjct: 1   MLGPTNAINEVGPSFCYANGEEEEPMTAIAAWDEFSFPPSVVFQPIKPLENKKKEHPILF 60

Query: 61  QTSHFKISSIIDASSEELEFEHPEELEEQQSDREEAENFEALGPYFP 108
           QTSHFKISSIIDASSEELEFEHPEELEEQQSDREEAENFEALGPYFP
Sbjct: 61  QTSHFKISSIIDASSEELEFEHPEELEEQQSDREEAENFEALGPYFP 107

The following BLAST results are available for this feature:
BLAST of CsaV3_6G037100 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647325.12.3e-53100.00hypothetical protein Csa_003007, partial [Cucumis sativus][more]
BLAST of CsaV3_6G037100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G037100 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G037100 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 78..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..107

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G037100.1CsaV3_6G037100.1mRNA