CsaV3_6G036990 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G036990
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 20778337 .. 20778863 (-)
RNA-Seq Expression	CsaV3_6G036990
Synteny	CsaV3_6G036990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCAGAGGTTGGTTGAGGTATGATTTACATGCTTTCTTCACAGGTGATCTTTCACAAATTCATATATGGTTATGAGAATATAAAGGATCGTGTAACATCTCATAAGTAATCGCTTAATAACTTTACATGATTGTCTAGACACAATAAACAATTGCTGATACATTACACGATTGTATAGACTTGTTGCACGATCATTTAAAGTTGGTATGTGATTATTTATGTTTTTTTACATGATCGTTTATACTTGTTACATGATCGTTTATACTTGTTACATGATCGTTTATACTTGTTACACGATCGTTTATGTGTTATATGTATTTCTTTAAAAAAGAAGACTTTTAATTTCAAAATCATACTAAGAATACCAACATGTCTTCGAAAGATGCCAACCAACGATGGAAACGACGGTGAAGAAGGAGGTGATGAGGATGGAGACACACCGGGATATAAATCGATGGATCCAATGTTTGTTGCAACCTTGTTAGAGGTTGAAGTGTTGACAATTAGAGAACTGGAACATTAA

mRNA sequence

ATGGTTCAGAGGTTGGTTGAGATGCCAACCAACGATGGAAACGACGGTGAAGAAGGAGGTGATGAGGATGGAGACACACCGGGATATAAATCGATGGATCCAATGTTTGTTGCAACCTTGTTAGAGGTTGAAGTGTTGACAATTAGAGAACTGGAACATTAA

Coding sequence (CDS)

ATGGTTCAGAGGTTGGTTGAGATGCCAACCAACGATGGAAACGACGGTGAAGAAGGAGGTGATGAGGATGGAGACACACCGGGATATAAATCGATGGATCCAATGTTTGTTGCAACCTTGTTAGAGGTTGAAGTGTTGACAATTAGAGAACTGGAACATTAA

Protein sequence

MVQRLVEMPTNDGNDGEEGGDEDGDTPGYKSMDPMFVATLLEVEVLTIRELEH*

Homology

[Close]

BLAST of CsaV3_6G036990 vs. NCBI nr
Match: KAE8647319.1 (hypothetical protein Csa_002792 [Cucumis sativus])

HSP 1 Score: 110.9 bits (276), Expect = 3.4e-21
Identity = 53/53 (100.00%), Postives = 53/53 (100.00%), Query Frame = 0


Query: 1  MVQRLVEMPTNDGNDGEEGGDEDGDTPGYKSMDPMFVATLLEVEVLTIRELEH 54
          MVQRLVEMPTNDGNDGEEGGDEDGDTPGYKSMDPMFVATLLEVEVLTIRELEH
Sbjct: 1  MVQRLVEMPTNDGNDGEEGGDEDGDTPGYKSMDPMFVATLLEVEVLTIRELEH 53

The following BLAST results are available for this feature:

BLAST of CsaV3_6G036990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647319.1	3.4e-21	100.00	hypothetical protein Csa_002792 [Cucumis sativus]	[more]

BLAST of CsaV3_6G036990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G036990 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G036990 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G036990.1	CsaV3_6G036990.1	mRNA