CsaV3_6G036760 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G036760
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionIntegrase catalytic domain-containing protein
Locationchr6: 20546781 .. 20546963 (-)
RNA-Seq ExpressionCsaV3_6G036760
SyntenyCsaV3_6G036760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTCTGTGCTGGTTGCCAGTATTGGAAGACACATCAACTACTGTTAAAGGAGTCCGAATTCAAAGAAAAACAACTATTGGAGAAGGTGCATTCAGACGTATTTGGTCCTGTCAAGCAATCTTCACTCAGTAGAATTCGCTACATGGTGACCTTTATTGATGACTTCTTTAGATATGCTTGA

mRNA sequence

ATGGTCTGTGCTGGTTGCCAGTATTGGAAGACACATCAACTACTGTTAAAGGAGTCCGAATTCAAAGAAAAACAACTATTGGAGAAGGTGCATTCAGACGTATTTGGTCCTGTCAAGCAATCTTCACTCAGTAGAATTCGCTACATGGTGACCTTTATTGATGACTTCTTTAGATATGCTTGA

Coding sequence (CDS)

ATGGTCTGTGCTGGTTGCCAGTATTGGAAGACACATCAACTACTGTTAAAGGAGTCCGAATTCAAAGAAAAACAACTATTGGAGAAGGTGCATTCAGACGTATTTGGTCCTGTCAAGCAATCTTCACTCAGTAGAATTCGCTACATGGTGACCTTTATTGATGACTTCTTTAGATATGCTTGA

Protein sequence

MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRYA*
Homology
BLAST of CsaV3_6G036760 vs. NCBI nr
Match: KAE8647311.1 (hypothetical protein Csa_003446 [Cucumis sativus])

HSP 1 Score: 127.5 bits (319), Expect = 4.0e-26
Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0

Query: 1  MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRYA 60
          MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRYA
Sbjct: 1  MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRYA 60

BLAST of CsaV3_6G036760 vs. NCBI nr
Match: AOZ57159.1 (integrase, partial [Coccinia grandis])

HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1   MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRY 60
           MVCAGCQY K HQL  KES+F+ KQ LE VHSDVFGPVKQSS+  +RYMVTFIDDF RY
Sbjct: 64  MVCAGCQYGKAHQLPFKESKFRAKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSRY 122

BLAST of CsaV3_6G036760 vs. NCBI nr
Match: KAE8734204.1 (PLAC8 family protein [Hibiscus syriacus])

HSP 1 Score: 93.6 bits (231), Expect = 6.4e-16
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1   MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRY 60
           MVCAGCQY K HQL   ES+FKEK+ LE VHSDVFGPVKQ S+S +RYMVTFIDDF +Y
Sbjct: 398 MVCAGCQYGKAHQLSYDESKFKEKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSKY 456

BLAST of CsaV3_6G036760 vs. NCBI nr
Match: KAA0046986.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1   MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFR 59
           MVCAGCQY K HQL  K+S+F+ KQ LE VHSDVF PVKQSS+S +RYMVTFIDDFFR
Sbjct: 315 MVCAGCQYGKAHQLPFKDSKFRAKQPLELVHSDVFDPVKQSSVSGMRYMVTFIDDFFR 372

BLAST of CsaV3_6G036760 vs. NCBI nr
Match: TYK27792.1 (Integrase, catalytic core [Cucumis melo var. makuwa])

HSP 1 Score: 91.7 bits (226), Expect = 2.4e-15
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 1   MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFR 59
           MVCAGCQY K HQL  KES+F+ KQ LE VHSDVFGPVKQSS+  +RYMVTFIDDF R
Sbjct: 161 MVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSR 218

BLAST of CsaV3_6G036760 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 44.7 bits (104), Expect = 4.4e-04
Identity = 21/56 (37.50%), Postives = 34/56 (60.71%), Query Frame = 0

Query: 3   CAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFR 59
           C  C + K H++  + S  ++  +L+ V+SDV GP++  S+   +Y VTFIDD  R
Sbjct: 457 CDYCLFGKQHRVSFQTSSERKLNILDLVYSDVCGPMEIESMGGNKYFVTFIDDASR 512

BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A1I9RYW4 (Integrase (Fragment) OS=Coccinia grandis OX=387127 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16
Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1   MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRY 60
           MVCAGCQY K HQL  KES+F+ KQ LE VHSDVFGPVKQSS+  +RYMVTFIDDF RY
Sbjct: 64  MVCAGCQYGKAHQLPFKESKFRAKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSRY 122

BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A6A3D0Q9 (PLAC8 family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000778pilonHSYRG00336 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 3.1e-16
Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0

Query: 1   MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRY 60
           MVCAGCQY K HQL   ES+FKEK+ LE VHSDVFGPVKQ S+S +RYMVTFIDDF +Y
Sbjct: 398 MVCAGCQYGKAHQLSYDESKFKEKEPLELVHSDVFGPVKQQSISGMRYMVTFIDDFSKY 456

BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A5A7TYD2 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001190 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 6.9e-16
Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0

Query: 1   MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFR 59
           MVCAGCQY K HQL  K+S+F+ KQ LE VHSDVF PVKQSS+S +RYMVTFIDDFFR
Sbjct: 315 MVCAGCQYGKAHQLPFKDSKFRAKQPLELVHSDVFDPVKQSSVSGMRYMVTFIDDFFR 372

BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A6A2YS02 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111303pilonHSYRG00095 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0

Query: 2   VCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRY 60
           VCAGCQY K HQL   ES+FK K+ LE VHSDVFGPVKQ S+  +RYMVTFIDDFFRY
Sbjct: 298 VCAGCQYGKAHQLPYDESKFKVKETLELVHSDVFGPVKQQSIRGMRYMVTFIDDFFRY 355

BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A5D3DWA1 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00120 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15
Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0

Query: 1   MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFR 59
           MVCAGCQY K HQL  KES+F+ KQ LE VHSDVFGPVKQSS+  +RYMVTFIDDF R
Sbjct: 161 MVCAGCQYGKAHQLPFKESKFRVKQPLELVHSDVFGPVKQSSIGGMRYMVTFIDDFSR 218

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647311.14.0e-26100.00hypothetical protein Csa_003446 [Cucumis sativus][more]
AOZ57159.12.9e-1676.27integrase, partial [Coccinia grandis][more]
KAE8734204.16.4e-1674.58PLAC8 family protein [Hibiscus syriacus][more]
KAA0046986.11.4e-1575.86Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, cata... [more]
TYK27792.12.4e-1575.86Integrase, catalytic core [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
P109784.4e-0437.50Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
Match NameE-valueIdentityDescription
A0A1I9RYW41.4e-1676.27Integrase (Fragment) OS=Coccinia grandis OX=387127 PE=4 SV=1[more]
A0A6A3D0Q93.1e-1674.58PLAC8 family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000778pilonHSY... [more]
A0A5A7TYD26.9e-1675.86Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
A0A6A2YS021.2e-1574.14Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=... [more]
A0A5D3DWA11.2e-1575.86Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G036760.1CsaV3_6G036760.1mRNA