CsaV3_6G036760 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCTGTGCTGGTTGCCAGTATTGGAAGACACATCAACTACTGTTAAAGGAGTCCGAATTCAAAGAAAAACAACTATTGGAGAAGGTGCATTCAGACGTATTTGGTCCTGTCAAGCAATCTTCACTCAGTAGAATTCGCTACATGGTGACCTTTATTGATGACTTCTTTAGATATGCTTGA ATGGTCTGTGCTGGTTGCCAGTATTGGAAGACACATCAACTACTGTTAAAGGAGTCCGAATTCAAAGAAAAACAACTATTGGAGAAGGTGCATTCAGACGTATTTGGTCCTGTCAAGCAATCTTCACTCAGTAGAATTCGCTACATGGTGACCTTTATTGATGACTTCTTTAGATATGCTTGA ATGGTCTGTGCTGGTTGCCAGTATTGGAAGACACATCAACTACTGTTAAAGGAGTCCGAATTCAAAGAAAAACAACTATTGGAGAAGGTGCATTCAGACGTATTTGGTCCTGTCAAGCAATCTTCACTCAGTAGAATTCGCTACATGGTGACCTTTATTGATGACTTCTTTAGATATGCTTGA MVCAGCQYWKTHQLLLKESEFKEKQLLEKVHSDVFGPVKQSSLSRIRYMVTFIDDFFRYA* Homology
BLAST of CsaV3_6G036760 vs. NCBI nr
Match: KAE8647311.1 (hypothetical protein Csa_003446 [Cucumis sativus]) HSP 1 Score: 127.5 bits (319), Expect = 4.0e-26 Identity = 60/60 (100.00%), Postives = 60/60 (100.00%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. NCBI nr
Match: AOZ57159.1 (integrase, partial [Coccinia grandis]) HSP 1 Score: 94.7 bits (234), Expect = 2.9e-16 Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. NCBI nr
Match: KAE8734204.1 (PLAC8 family protein [Hibiscus syriacus]) HSP 1 Score: 93.6 bits (231), Expect = 6.4e-16 Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. NCBI nr
Match: KAA0046986.1 (Integrase, catalytic core [Cucumis melo var. makuwa] >TYK04797.1 Integrase, catalytic core [Cucumis melo var. makuwa]) HSP 1 Score: 92.4 bits (228), Expect = 1.4e-15 Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. NCBI nr
Match: TYK27792.1 (Integrase, catalytic core [Cucumis melo var. makuwa]) HSP 1 Score: 91.7 bits (226), Expect = 2.4e-15 Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 4.4e-04 Identity = 21/56 (37.50%), Postives = 34/56 (60.71%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A1I9RYW4 (Integrase (Fragment) OS=Coccinia grandis OX=387127 PE=4 SV=1) HSP 1 Score: 94.7 bits (234), Expect = 1.4e-16 Identity = 45/59 (76.27%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A6A3D0Q9 (PLAC8 family protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00000778pilonHSYRG00336 PE=4 SV=1) HSP 1 Score: 93.6 bits (231), Expect = 3.1e-16 Identity = 44/59 (74.58%), Postives = 49/59 (83.05%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A5A7TYD2 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold68G001190 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 6.9e-16 Identity = 44/58 (75.86%), Postives = 49/58 (84.48%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A6A2YS02 (Integrase catalytic domain-containing protein OS=Hibiscus syriacus OX=106335 GN=F3Y22_tig00111303pilonHSYRG00095 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15 Identity = 43/58 (74.14%), Postives = 47/58 (81.03%), Query Frame = 0
BLAST of CsaV3_6G036760 vs. ExPASy TrEMBL
Match: A0A5D3DWA1 (Integrase, catalytic core OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold749G00120 PE=4 SV=1) HSP 1 Score: 91.7 bits (226), Expect = 1.2e-15 Identity = 44/58 (75.86%), Postives = 48/58 (82.76%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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