CsaV3_6G036410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G036410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 20246558 .. 20246841 (-)
RNA-Seq Expression	CsaV3_6G036410
Synteny	CsaV3_6G036410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGGTAAGTACATACAGAGAGGAAAAAGAGTTGAAAAGGTTACCAACGCCATTGATTATTTATTTGAAGCATGAAAAGGAATTTGTCGTTACTGTAGTAAGTGGAATGCACAGTGAAGGCACTGTTCTGAGTAGGTCAGAAGGAACGAGCGACAAAGGTACGGAAGCAACCAAAGGCAATGGCAAGTGGATAGGCAGTGGTGCCCAACTCAGGCGGAGCCGCTGA

mRNA sequence

ATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGTGAAGGCACTGTTCTGAGTAGGTCAGAAGGAACGAGCGACAAAGGTACGGAAGCAACCAAAGGCAATGGCAAGTGGATAGGCAGTGGTGCCCAACTCAGGCGGAGCCGCTGA

Coding sequence (CDS)

ATGGCCGTAAGAGTAAAGATGCAAATGCTATCACTTCTAAGCTACGTCCATCTATTAAACTGTGAAGGCACTGTTCTGAGTAGGTCAGAAGGAACGAGCGACAAAGGTACGGAAGCAACCAAAGGCAATGGCAAGTGGATAGGCAGTGGTGCCCAACTCAGGCGGAGCCGCTGA

Protein sequence

MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR*

Homology

[Close]

BLAST of CsaV3_6G036410 vs. NCBI nr
Match: KGN47820.1 (hypothetical protein Csa_004346 [Cucumis sativus])

HSP 1 Score: 111.7 bits (278), Expect = 2.1e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR 58
          MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR
Sbjct: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR 57

[Close]

BLAST of CsaV3_6G036410 vs. ExPASy TrEMBL
Match: A0A0A0KDN2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405330 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 1.0e-21
Identity = 57/57 (100.00%), Postives = 57/57 (100.00%), Query Frame = 0


Query: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR 58
          MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR
Sbjct: 1  MAVRVKMQMLSLLSYVHLLNCEGTVLSRSEGTSDKGTEATKGNGKWIGSGAQLRRSR 57

The following BLAST results are available for this feature:

BLAST of CsaV3_6G036410 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47820.1	2.1e-21	100.00	hypothetical protein Csa_004346 [Cucumis sativus]	[more]

BLAST of CsaV3_6G036410 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G036410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDN2	1.0e-21	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G405330 PE=4 SV=1	[more]

BLAST of CsaV3_6G036410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 27..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G036410.1	CsaV3_6G036410.1	mRNA