CsaV3_6G035890 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G035890
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 19863220 .. 19864829 (+)
RNA-Seq ExpressionCsaV3_6G035890
SyntenyCsaV3_6G035890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAACTACAAAACCCTAATTAAAAACTCCTCTTCTGATTTCTTGCTCTCACCATTAGTTCTTTTTTCTTTACACAAACTCTTCTCGTTTCTTTTTCTTTTCGAAGATTCATCTCTTATGGCCTTTCTTAGGTTTGCTTGCTTTTTGTTGGTTGTTCTTCCTGTTACATCACTCTCCATCATCAAGTTTCATCAACAAGGTCTCTCTCTCTCTCTCTATTATTATTCATTCATCTCTCTCTTTTAATATATTTCTTTTCAACTATTTCTCAAATAGGGTGGGAATTAATGAACTCTCCCTAAATAAACTAAAATTTTGTTATATTTTTTAAATATGTTAAACAATTTTATCATTTAGAACAACTTCTCTTTCTATGTTTATGCAATATAATATTTATTGCATGCAATGATAGGCAAATTTTCAAGGGAATATTTGAGCTTTCGTTTACGCTATATATTCTAGTTGATAGGGGTGGTTTTTTTCGTATGTTATTGGTTCATTTACAGATTCATCAGATGGTATATTTTTGGAGAAAACAAAGTTAGAATTTAAGTCAAGTTAAATTTTAGTACTCACAGTTTCGAAAAACTATATAAATAATCTCTATAGCTAGTTAAAATTCTCGTATATTTAGTGTTTTTCTAAAAACTTTATCAAATCGTAAGAAGAAAATTTTAACTTTTTCCAAATGACAAGGACTAGATTTGCAACTTAACCTATGTGTTATAGTAAAAAATGTTGCATTTTATAATCCTTTAACGATTTTTGTACGTATAATTGATGTATTTTCTTGTAGTGTGAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTAGAAGACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGTAAGTAAACATAAACACCATACACACAAAATCTTCATCATACTAAACACATTATTAATCAATTTATATAATTCAGTAACAGTTTTTCTTTTTTCTTTTTAAACTCTGTTTAGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAGAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGATTCCCAAAAAAAAAAAGTATTGAAGCTTTTGGTTCTTAAAAGTTCTTGTTTTTATGCATGTTAAATATATATATCCAATTTTCCTATCTTCTTATAATAATATATGTCATATATATGAGTTCCACTATATATATTATAATATGTAATCAACAAATTAAGCTAAAGTTTTTTTTTTTTTCTTGGGGTTTTTACTCATTTATAATCAAAATTTGCTTGCATAGAGCATAAACGTTCGAGGAGATTCTGTTTCTATCTCTTGTAATAGTAAAAGTGTTGTTCTTACTTATGTAGAGAGTTATTAGATGTATTTGAGGTTGTAATTTTATAATTTTAATGG

mRNA sequence

CTAAACTACAAAACCCTAATTAAAAACTCCTCTTCTGATTTCTTGCTCTCACCATTAGTTCTTTTTTCTTTACACAAACTCTTCTCGTTTCTTTTTCTTTTCGAAGATTCATCTCTTATGGCCTTTCTTAGGTTTGCTTGCTTTTTGTTGGTTGTTCTTCCTGTTACATCACTCTCCATCATCAAGTTTCATCAACAAGAAGACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAGAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGA

Coding sequence (CDS)

CTAAACTACAAAACCCTAATTAAAAACTCCTCTTCTGATTTCTTGCTCTCACCATTAGTTCTTTTTTCTTTACACAAACTCTTCTCGTTTCTTTTTCTTTTCGAAGATTCATCTCTTATGGCCTTTCTTAGGTTTGCTTGCTTTTTGTTGGTTGTTCTTCCTGTTACATCACTCTCCATCATCAAGTTTCATCAACAAGAAGACAAAGATGTAGCTGAAGATAGGGTTGGTTCACTCAAAATGGAACTTCTGAGGAACAATAACATTGGAGGAAGAAGATTAGGAGCAGCGAAAGAGTTCATGGAAATGGAGAATAGCAAAAGCTTTGGAAAGAATGGGTCTAAAGAGAAGATTTCAAATATGGTTTTTTCAAGTGCTTCCAATGAAGAAAATGGCAAAAAGAAGAATAAGAAGAAGGAGGTTTCAAGTTTAGAAACAAAGAAAATGGGAATTAGTGGGTCAACAGTTGTTTATAATAATGCTGATTATTTGACTTATATGCATCACCCACCAAAACATAATTGA

Protein sequence

LNYKTLIKNSSSDFLLSPLVLFSLHKLFSFLFLFEDSSLMAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN*
Homology
[Close]
BLAST of CsaV3_6G035890 vs. NCBI nr
Match: KGN48024.2 (hypothetical protein Csa_003208, partial [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 4.9e-85
Identity = 174/174 (100.00%), Postives = 174/174 (100.00%), Query Frame = 0 

Query: 1   LNYKTLIKNSSSDFLLSPLVLFSLHKLFSFLFLFEDSSLMAFLRFACFLLVVLPVTSLSI 60
           LNYKTLIKNSSSDFLLSPLVLFSLHKLFSFLFLFEDSSLMAFLRFACFLLVVLPVTSLSI
Sbjct: 1   LNYKTLIKNSSSDFLLSPLVLFSLHKLFSFLFLFEDSSLMAFLRFACFLLVVLPVTSLSI 60

Query: 61  IKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISN 120
           IKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISN
Sbjct: 61  IKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISN 120

Query: 121 MVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 175
           MVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN
Sbjct: 121 MVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 174

[Close]
BLAST of CsaV3_6G035890 vs. NCBI nr
Match: XP_031743130.1 (uncharacterized protein LOC105435861 isoform X1 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 2.1e-64
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 40  MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 99
           MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE
Sbjct: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 60

Query: 100 FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 159
           FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN
Sbjct: 61  FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 120

Query: 160 NADYLTYMHHPPKHN 175
           NADYLTYMHHPPKHN
Sbjct: 121 NADYLTYMHHPPKHN 135

[Close]
BLAST of CsaV3_6G035890 vs. NCBI nr
Match: XP_031743131.1 (uncharacterized protein LOC105435861 isoform X2 [Cucumis sativus])

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-62
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 40  MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 99
           MAFLRFACFLLVVLPVTSLSIIKFHQQ DKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE
Sbjct: 1   MAFLRFACFLLVVLPVTSLSIIKFHQQ-DKDVAEDRVGSLKMELLRNNNIGGRRLGAAKE 60

Query: 100 FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 159
           FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN
Sbjct: 61  FMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTVVYN 120

Query: 160 NADYLTYMHHPPKHN 175
           NADYLTYMHHPPKHN
Sbjct: 121 NADYLTYMHHPPKHN 134

[Close]
BLAST of CsaV3_6G035890 vs. NCBI nr
Match: XP_008445410.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo])

HSP 1 Score: 225.7 bits (574), Expect = 3.1e-55
Identity = 124/137 (90.51%), Postives = 127/137 (92.70%), Query Frame = 0 

Query: 40  MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAA-K 99
           MA +RFACFLLVVLPVTSLSIIKFHQQEDKD AEDRVGSLKME LRNNNIGGRRLG   K
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQEDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 100 EFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGST-VV 159
           E MEMENSKSFGKNGSKEK SNMVFSSA+NEENGKKKN KK+VSSLETKKMGISGST VV
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVV 120

Query: 160 YNNADYLTYMHHPPKHN 175
           YNNADYLTYMHHPPKHN
Sbjct: 121 YNNADYLTYMHHPPKHN 137

[Close]
BLAST of CsaV3_6G035890 vs. NCBI nr
Match: XP_008445411.1 (PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo])

HSP 1 Score: 219.2 bits (557), Expect = 2.9e-53
Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 0 

Query: 40  MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAA-K 99
           MA +RFACFLLVVLPVTSLSIIKFHQQ DKD AEDRVGSLKME LRNNNIGGRRLG   K
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQ-DKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 100 EFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGST-VV 159
           E MEMENSKSFGKNGSKEK SNMVFSSA+NEENGKKKN KK+VSSLETKKMGISGST VV
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVV 120

Query: 160 YNNADYLTYMHHPPKHN 175
           YNNADYLTYMHHPPKHN
Sbjct: 121 YNNADYLTYMHHPPKHN 136

[Close]
BLAST of CsaV3_6G035890 vs. ExPASy TrEMBL
Match: A0A1S3BDD4 (uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.5e-55
Identity = 124/137 (90.51%), Postives = 127/137 (92.70%), Query Frame = 0 

Query: 40  MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAA-K 99
           MA +RFACFLLVVLPVTSLSIIKFHQQEDKD AEDRVGSLKME LRNNNIGGRRLG   K
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQEDKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 100 EFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGST-VV 159
           E MEMENSKSFGKNGSKEK SNMVFSSA+NEENGKKKN KK+VSSLETKKMGISGST VV
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVV 120

Query: 160 YNNADYLTYMHHPPKHN 175
           YNNADYLTYMHHPPKHN
Sbjct: 121 YNNADYLTYMHHPPKHN 137

[Close]
BLAST of CsaV3_6G035890 vs. ExPASy TrEMBL
Match: A0A1S3BDI1 (uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488445 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 1.4e-53
Identity = 123/137 (89.78%), Postives = 126/137 (91.97%), Query Frame = 0 

Query: 40  MAFLRFACFLLVVLPVTSLSIIKFHQQEDKDVAEDRVGSLKMELLRNNNIGGRRLGAA-K 99
           MA +RFACFLLVVLPVTSLSIIKFHQQ DKD AEDRVGSLKME LRNNNIGGRRLG   K
Sbjct: 1   MACVRFACFLLVVLPVTSLSIIKFHQQ-DKDAAEDRVGSLKMEPLRNNNIGGRRLGVLNK 60

Query: 100 EFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGST-VV 159
           E MEMENSKSFGKNGSKEK SNMVFSSA+NEENGKKKN KK+VSSLETKKMGISGST VV
Sbjct: 61  ELMEMENSKSFGKNGSKEKTSNMVFSSAANEENGKKKNDKKKVSSLETKKMGISGSTVVV 120

Query: 160 YNNADYLTYMHHPPKHN 175
           YNNADYLTYMHHPPKHN
Sbjct: 121 YNNADYLTYMHHPPKHN 136

[Close]
BLAST of CsaV3_6G035890 vs. ExPASy TrEMBL
Match: A0A0A0KHA3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 4.2e-42
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 81  MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKE 140
           MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKE
Sbjct: 1   MELLRNNNIGGRRLGAAKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKE 60

Query: 141 VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 175
           VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN
Sbjct: 61  VSSLETKKMGISGSTVVYNNADYLTYMHHPPKHN 94

[Close]
BLAST of CsaV3_6G035890 vs. ExPASy TrEMBL
Match: A0A6J1GIZ1 (uncharacterized protein LOC111454657 OS=Cucurbita moschata OX=3662 GN=LOC111454657 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.3e-22
Identity = 77/138 (55.80%), Postives = 92/138 (66.67%), Query Frame = 0 

Query: 40  MAFLRFACFLLVVLPVTSLSIIKFHQ-QEDKDVAE--DRVGSLKMELLRNNNIGGRRLGA 99
           M F+RFACFLLVVLP+TSLSI+KFH+  E KDVA+  D   S + EL+ +NNIGGRR   
Sbjct: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASREKELV-SNNIGGRRRLE 60

Query: 100 AKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTV 159
            KE M +E SKS          S M  SS+ N ENGKKK K         KK+G +GS++
Sbjct: 61  VKEGMPLERSKS----------SKMAVSSSFNGENGKKKKK---------KKLG-NGSSL 117

Query: 160 VYNNADYLTYMHHPPKHN 175
           VY NADYLT+MHHPPKHN
Sbjct: 121 VYENADYLTHMHHPPKHN 117

[Close]
BLAST of CsaV3_6G035890 vs. ExPASy TrEMBL
Match: A0A6J1KPF0 (uncharacterized protein LOC111496054 OS=Cucurbita maxima OX=3661 GN=LOC111496054 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 2.0e-20
Identity = 74/138 (53.62%), Postives = 89/138 (64.49%), Query Frame = 0 

Query: 40  MAFLRFACFLLVVLPVTSLSIIKFHQ-QEDKDVAE--DRVGSLKMELLRNNNIGGRRLGA 99
           M F+RFACFLLVVLP+TSLSI+KFH+  E KDVA+  D   S + ELL +NNIGGRR   
Sbjct: 1   MGFVRFACFLLVVLPITSLSIMKFHRGLEYKDVAQARDSFASHEKELL-SNNIGGRRRLE 60

Query: 100 AKEFMEMENSKSFGKNGSKEKISNMVFSSASNEENGKKKNKKKEVSSLETKKMGISGSTV 159
            +E M +E+SKS          S M   S+ N ENGKKK KK             +GS++
Sbjct: 61  VQEGMPLESSKS----------SKMAVPSSFNGENGKKKKKKSG-----------NGSSL 116

Query: 160 VYNNADYLTYMHHPPKHN 175
           VY NADYLT+MHHPPKHN
Sbjct: 121 VYENADYLTHMHHPPKHN 116

The following BLAST results are available for this feature:
BLAST of CsaV3_6G035890 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN48024.24.9e-85100.00hypothetical protein Csa_003208, partial [Cucumis sativus][more]
XP_031743130.12.1e-64100.00uncharacterized protein LOC105435861 isoform X1 [Cucumis sativus][more]
XP_031743131.12.0e-6299.26uncharacterized protein LOC105435861 isoform X2 [Cucumis sativus][more]
XP_008445410.13.1e-5590.51PREDICTED: uncharacterized protein LOC103488445 isoform X1 [Cucumis melo][more]
XP_008445411.12.9e-5389.78PREDICTED: uncharacterized protein LOC103488445 isoform X2 [Cucumis melo][more]
BLAST of CsaV3_6G035890 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G035890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BDD41.5e-5590.51uncharacterized protein LOC103488445 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A1S3BDI11.4e-5389.78uncharacterized protein LOC103488445 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
A0A0A0KHA34.2e-42100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G401420 PE=4 SV=1[more]
A0A6J1GIZ18.3e-2255.80uncharacterized protein LOC111454657 OS=Cucurbita moschata OX=3662 GN=LOC1114546... [more]
A0A6J1KPF02.0e-2053.62uncharacterized protein LOC111496054 OS=Cucurbita maxima OX=3661 GN=LOC111496054... [more]
BLAST of CsaV3_6G035890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 130..145
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 123..146

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G035890.1CsaV3_6G035890.1mRNA