CsaV3_6G034420 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G034420
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	E3 ubiquitin-protein ligase RING1-like
Location	chr6: 19293889 .. 19297208 (+)
RNA-Seq Expression	CsaV3_6G034420
Synteny	CsaV3_6G034420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTTTCTTCTTTCCTTCATATAATTTTACCCTCTTTTCTTGTTATTGTTCTTCTTCTTCTTCGTTTCGCTCTGTGATTTTTTTCAATTCTTGACCTTACTTTGATCTCCCATGGCTATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATCTCCAATTCTCACTTGCTTCCTTGTAACTGTTTCCTTTTCCACCTTCACTTCCGCCACATTCTTCAGTCAAATCACTCTCAACAATTTCACTATCTCCTAAATTCTTCTCTATCTTCTTTCTTGATACCTTGCGATGTCTTTTTCGCTACTGCCTCCAGTATCCTCATCGCTGTTTTCTCTGGCACCGGTGTCGCACAAGACTTCTTGGACACGGCTGTGCCTGACGTTCTCTCTGTCGCCGCTGATATCGCATGCAATCCTCTTAATGCTGGCCGTACCATACTTCCGTTGGCGGTGTCCGTTTTAGTTGTTTCGCCCTACAATGAACGCCAGGAAATTGGGCGAGTCTTACGGGAATCATCCCCGCAAGCGTTTAAGACGTTGCCAGCTAGTGAGATGGCAATCGAAGGTTTGAAGAAAGTGGAGATTGATGTTGGTGGAGAGTTGTTGATTGGAGAATGTAGGATATGTTTGGATGAACTCATGAATGGAATGGAAGTTACGCGATTGCCGTGCGCTCATCTTTATCATAGAGACTGTATTGTTAAATGGCTGGAGACGAGTCATTTGTGCCCCTTGTGCCGGTACGCAATGCCGCTGAGCTGAATGGATAGAATTTGCAGGGATCAACGGTTGTACATGATGAAATTGAATTTACAACGGGGAATGCATGGTAAAATTTTGATGAGAATTGAATTTTGATTCTTGCATTTTTCTTAATTAAGCAGAATTCTTGAGCCCTAGCTTATAACCATTCTGTTTTCTATCAAAATTGCATAAGTGGATTGGGGCTATACATGATGAACATATATCTCTCATCTTCAATTAGTAGAAATTAAATTTAAGTTTGAAGTTCATTGGCGATATGGCTACTACGCATGATGATACGTTTCACTTGTTCTTCTCCCATCTGATATTTTAGAATTTAGTGGATTAGGGCTATACATGAATCCTACACAGATTGCATCTTCAATTAGCAAAAATTAAGTTTAAGTTTGAAGTTCATTAACGATACCTACTAAACATGATACATTGCACTTGCTCCACTCTTATCTGATCGTTTGTCTATGGATTATTAGTCAGAATTTTTTGCTAATCAAGATCTCTCCCGGTTCCATTTCTGGTCTGTAGTTCAAATTGTAACGAAAAAATATGTTTAGATAAAAATTTTGAAATTCTTATTGAACTTATTATTCAATTGATTGCAGGAAGCTAAATATACATTGTATAGTTATCATTTGTTGAGTATTGGGAAGATGTAAATTGACTGACCGAAGATAAAGAACCAACAACAAAGCCTAGTTTTTGTTAGTTTTCAACTTAGCTGATGTAGAGAAGCAAGAAAATAAAGTGGACTGGTCCTTGAAACTCCATTGACCTTGAAACATATAGATCAATCTAACAGATAATAGAATATGAGACAGAAGTTCAGTTTGAAGGTTGACAATGATTTTAGGATGCTGATGAAACCTTCGCGGTCACTACTTTTTGAAGAACAGCTCAATCAGAGAAGATTTTTATGGGGCAAAGCCAACCAGGGTATGGCCATGATCTCTAGAGGGGCAAATTGTTGATGTTTTTACTATTGGACAAGCTTTGTTCAAGAGAAATTTGCAGATAGAAATTCAGACAGCAAAAAGGATCGCTTGAAGAGAGACAGAGAGAGCAGGAAGCAGGGAGTATGCCTTTGCCCACATCCAGAAGAAATGCTTATGCCAATACATTGCTGACTAAGGTGAGTGCATAACATTTGTGTCTCAATTAAGAAGCAAAATATATTATGAACAAGGGCTAATTGATCATGAGACTTTATTTCCAATACTATGATGTACAGCCAAGGTAGTTTATCAAATATTTGAAATAGATTTTCTTAAAGGAAACTGTGTACTTTTCTTCTCTGAACTACAGAAATAGCTAGAATAAAAATAAAAACTACCATAAGACAAACTTGGGAGAAAAGTTAATTGGTATTATTATAGTAAAACTTTCAAACAGTACGTTTAGACATATAAATAAAATTAGAATTTAAGCAAATGTAAAAGAAATTAAAACATGATATGCTTTAGGGAAAGAAATAAAAAATCAAAAGATATAGTTGTTCCTTTCAAAAGGAACATTAGAAATCATCCTTTCTTCTTTGAATTGTGATCTTCTTCCATCATCCTATGCAACATTCTATTCTTTTGCAGGTCCTCATTCCCTTCTTGATTCCCCTATTGAAACCCTTCCCATTCCCACAGCTTCCATCTGTTCAGCCTATATTATCGCTGATCTTCCACCTATTCACTTTCACTTTCACTTTCTTGTGACCCTATCCAACTGTTCGGGGATGATTCAAACCACCTCAACTTCCAAATAATCACCGTCGTCATTATAGTAGCCTTCCCAGCCCTCCTCTGTTTTCTATTCTCAACTCTCTATACTTCTCATCCCCTCCCTTTCTCACCCCTCCAGGCCAGTCTTCATAGCTCAAGTCTTCCACTCCAGTACCAAAACGAGAATTGCAATCTTGTTCCTCTGCTGTATCAGAAGAAGAACTGCAGTCTTCAAGGACGTGCCCCAGCTTTCCACATTCATAGCAGAAATCCATGAGCTTTTGACAAGAGATAGGTATAAAAACTTCTTCTCCCATAGATCCAACTTTCAACTTCACTTTACCACTCTTCTCAAAGGCTTTTTCACATCAATACTCACTCTAACTCTCGTAATTCTTCCCCAACACATTCCTTTCTCATCTGTCTCGAACCTCCTGACCATATTGCTAAACACAATGGCCATTCTCCTTGAGTGGTGAAAAAGAACCCAAAAAGAAGCATATTGGAAGTGTAGGTTTATAAACTTGGAAGTTCCTGTTGGTGGTGTTCGAGAAGCAAGGATCCAAGGACCAATTTAAAATGAAGATCTTTGTCTTTTCCAAATCATTGGCATCATAGATTTAAAAACCCAAGGACCCAAGGACCGTTTTCTTATCATTGGGAGCTTTGAATATACATAAGTAGATATTGCAATGATTGTTACTTCTTGGAGATTCCAAATCATTGGCATATCATAGATTTAAAAAAACATCCTCATTCACCATCTTTGATGTTAAAATTTTGCAAACTAGTGCCGTCTGTAGTTGTTTTCTATTTCCT

mRNA sequence

ATGGCTATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATCTCCAATTCTCACTTGCTTCCTTGTAACTGTTTCCTTTTCCACCTTCACTTCCGCCACATTCTTCAGTCAAATCACTCTCAACAATTTCACTATCTCCTAAATTCTTCTCTATCTTCTTTCTTGATACCTTGCGATGTCTTTTTCGCTACTGCCTCCAGTATCCTCATCGCTGTTTTCTCTGGCACCGGTGTCGCACAAGACTTCTTGGACACGGCTGTGCCTGACGTTCTCTCTGTCGCCGCTGATATCGCATGCAATCCTCTTAATGCTGGCCGTACCATACTTCCGTTGGCGGTGTCCGTTTTAGTTGTTTCGCCCTACAATGAACGCCAGGAAATTGGGCGAGTCTTACGGGAATCATCCCCGCAAGCGTTTAAGACGTTGCCAGCTAGTGAGATGGCAATCGAAGGTTTGAAGAAAGTGGAGATTGATGTTGGTGGAGAGTTGTTGATTGGAGAATGTAGGATATGTTTGGATGAACTCATGAATGGAATGGAAGTTACGCGATTGCCGTGCGCTCATCTTTATCATAGAGACTGTATTGTTAAATGGCTGGAGACGAGTCATTTGTGCCCCTTGTGCCGGTACGCAATGCCGCTGAGCTGA

Coding sequence (CDS)

ATGGCTATGGATACTCTATACGATTACCACATATGGCAACCTGAAGAAGGTGAAGATGATCTTAATGTTACCATCTCCAATTCTCACTTGCTTCCTTGTAACTGTTTCCTTTTCCACCTTCACTTCCGCCACATTCTTCAGTCAAATCACTCTCAACAATTTCACTATCTCCTAAATTCTTCTCTATCTTCTTTCTTGATACCTTGCGATGTCTTTTTCGCTACTGCCTCCAGTATCCTCATCGCTGTTTTCTCTGGCACCGGTGTCGCACAAGACTTCTTGGACACGGCTGTGCCTGACGTTCTCTCTGTCGCCGCTGATATCGCATGCAATCCTCTTAATGCTGGCCGTACCATACTTCCGTTGGCGGTGTCCGTTTTAGTTGTTTCGCCCTACAATGAACGCCAGGAAATTGGGCGAGTCTTACGGGAATCATCCCCGCAAGCGTTTAAGACGTTGCCAGCTAGTGAGATGGCAATCGAAGGTTTGAAGAAAGTGGAGATTGATGTTGGTGGAGAGTTGTTGATTGGAGAATGTAGGATATGTTTGGATGAACTCATGAATGGAATGGAAGTTACGCGATTGCCGTGCGCTCATCTTTATCATAGAGACTGTATTGTTAAATGGCTGGAGACGAGTCATTTGTGCCCCTTGTGCCGGTACGCAATGCCGCTGAGCTGA

Protein sequence

MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNSSLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTILPLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS*

Homology

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BLAST of CsaV3_6G034420 vs. NCBI nr
Match: XP_004150446.1 (E3 ubiquitin-protein ligase RING1 [Cucumis sativus] >KGN47723.1 hypothetical protein Csa_018280 [Cucumis sativus])

HSP 1 Score: 460.7 bits (1184), Expect = 7.4e-126
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

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BLAST of CsaV3_6G034420 vs. NCBI nr
Match: XP_008466716.1 (PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0059921.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa] >TYK24868.1 E3 ubiquitin-protein ligase RING1-like [Cucumis melo var. makuwa])

HSP 1 Score: 444.1 bits (1141), Expect = 7.1e-121
Identity = 217/226 (96.02%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQ HYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSS+LIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PL VSVLVVSPYNERQEIG+VLRESSPQAFKTLPASEMAIE LK VEI VGGELLIGECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

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BLAST of CsaV3_6G034420 vs. NCBI nr
Match: XP_038885922.1 (E3 ubiquitin-protein ligase RING1-like [Benincasa hispida])

HSP 1 Score: 423.7 bits (1088), Expect = 1.0e-114
Identity = 206/226 (91.15%), Postives = 215/226 (95.13%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQP+EGE DLNVT+SNSHLLPC+CFLFHLHFRH+LQSNH Q+FH LLNS
Sbjct: 1   MAMDTLYDYHIWQPQEGEGDLNVTMSNSHLLPCDCFLFHLHFRHVLQSNHPQEFHLLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPC+VF AT SSILIAVFS TGVAQDFLDTAVPDVLSVAADIACNPLNAGR IL
Sbjct: 61  SLSSFLIPCNVFLATGSSILIAVFSDTGVAQDFLDTAVPDVLSVAADIACNPLNAGRRIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PLAVSVLVVSPYNER+EIGRVLRESS Q FKTLPASE AIEGLK V+IDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNEREEIGRVLRESSAQPFKTLPASETAIEGLKNVDIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH+YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHVYHRDCIVKWLETSHLCPLCRYAMPLS 226

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BLAST of CsaV3_6G034420 vs. NCBI nr
Match: XP_022990569.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima])

HSP 1 Score: 415.2 bits (1066), Expect = 3.6e-112
Identity = 203/226 (89.82%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQAFKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsaV3_6G034420 vs. NCBI nr
Match: XP_023554199.1 (probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 414.1 bits (1063), Expect = 7.9e-112
Identity = 202/226 (89.38%), Postives = 209/226 (92.48%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDINVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQAFKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

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BLAST of CsaV3_6G034420 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.2e-14
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 0


Query: 93  FLDTAVPDVLSVAADIAC----NPLNAGRTILPLAVSVLVVSPYNERQEIGRVLRESSPQ 152
           F+   + D+ S  A I      NP + G   LP  +    + P  E  ++ + L E+ P 
Sbjct: 136 FIQNHLNDLRSSGAQIEFVIQNNPSDQGFR-LPANIGDYFIGPGLE--QLIQQLAENDPN 195

Query: 153 AFKTLPASEMAIEGLKKVEIDVGG-ELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIV 212
            + T PAS+ AIE L  V I          +C +C+D+   G E  ++PC HLYH+DC++
Sbjct: 196 RYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLYHKDCLL 255

Query: 213 KWLETSHLCPLCRYAMP 225
            WLE  + CP+CR+ +P
Sbjct: 256 PWLELHNSCPVCRHELP 269

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BLAST of CsaV3_6G034420 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 3.6e-14
Identity = 33/92 (35.87%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 136 QEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELL---IGECRICLDELMNGMEV 195
           +++ + L E+ P  + T PAS+ AI+ L  V+  V  ++L   + +C +C+DE  +G +V
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVK--VTKDMLKSEMNQCAVCMDEFEDGSDV 231

Query: 196 TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMP 225
            ++PC H++H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]

BLAST of CsaV3_6G034420 vs. ExPASy Swiss-Prot
Match: Q6AVN2 (E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SIRP1 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 5.7e-12
Identity = 32/83 (38.55%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 142 LRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLY 201
           L ES P    T PA + A+E L  V+I+      +  C +CLD+L  G +  ++PC H +
Sbjct: 167 LAESDPSRNGTPPAKKEAVEALPTVKIEE-----VVSCSVCLDDLEVGSQAKQMPCEHKF 226

Query: 202 HRDCIVKWLETSHLCPLCRYAMP 225
           H  CI+ WLE    CP+CR+ +P
Sbjct: 227 HSSCILPWLELHSSCPVCRFELP 244

[Close]

BLAST of CsaV3_6G034420 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 4.8e-11
Identity = 29/71 (40.85%), Postives = 41/71 (57.75%), Query Frame = 0


Query: 154 PASEMAIEGLKKVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKWLETS 213
           PAS+ AIE L +VEI          C +C +    G+E   +PC H++H DCIV WL   
Sbjct: 190 PASKSAIESLPRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIR 249

Query: 214 HLCPLCRYAMP 225
           + CP+CR+ +P
Sbjct: 250 NSCPVCRFELP 260

[Close]

BLAST of CsaV3_6G034420 vs. ExPASy Swiss-Prot
Match: Q9SPL2 (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.2e-11
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 154 PASEMAIEGLKKVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKWLETS 213
           PA++ AIE L+  E+      ++  C +C D ++ G    +LPC H YH DCIV WL T 
Sbjct: 232 PAAKSAIEALETFEVSSSEGEMVMVCAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTR 291

Query: 214 HLCPLCRYAM 224
           + CP+CR+ +
Sbjct: 292 NSCPVCRFQL 301

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BLAST of CsaV3_6G034420 vs. ExPASy TrEMBL
Match: A0A0A0KDU3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 PE=4 SV=1)

HSP 1 Score: 460.7 bits (1184), Expect = 3.6e-126
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR
Sbjct: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsaV3_6G034420 vs. ExPASy TrEMBL
Match: A0A5A7V2F0 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001370 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 3.5e-121
Identity = 217/226 (96.02%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQ HYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSS+LIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PL VSVLVVSPYNERQEIG+VLRESSPQAFKTLPASEMAIE LK VEI VGGELLIGECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsaV3_6G034420 vs. ExPASy TrEMBL
Match: A0A1S3CS28 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103504063 PE=4 SV=1)

HSP 1 Score: 444.1 bits (1141), Expect = 3.5e-121
Identity = 217/226 (96.02%), Postives = 221/226 (97.79%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQ HYLLNS
Sbjct: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQSHYLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSS+LIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL
Sbjct: 61  SLSSYLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PL VSVLVVSPYNERQEIG+VLRESSPQAFKTLPASEMAIE LK VEI VGGELLIGECR
Sbjct: 121 PLTVSVLVVSPYNERQEIGQVLRESSPQAFKTLPASEMAIEDLKNVEIGVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDEL+NGME+TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELVNGMEITRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsaV3_6G034420 vs. ExPASy TrEMBL
Match: A0A6J1JSE1 (probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita maxima OX=3661 GN=LOC111487409 PE=4 SV=1)

HSP 1 Score: 415.2 bits (1066), Expect = 1.7e-112
Identity = 203/226 (89.82%), Postives = 210/226 (92.92%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQAFKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQAFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsaV3_6G034420 vs. ExPASy TrEMBL
Match: A0A6J1HJY0 (probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita moschata OX=3662 GN=LOC111463602 PE=4 SV=1)

HSP 1 Score: 411.8 bits (1057), Expect = 1.9e-111
Identity = 201/226 (88.94%), Postives = 208/226 (92.04%), Query Frame = 0


Query: 1   MAMDTLYDYHIWQPEEGEDDLNVTISNSHLLPCNCFLFHLHFRHILQSNHSQQFHYLLNS 60
           MAMDTLYDY IWQPEE EDD+NVTISNSHLLPC+CFLFHLHFRH+LQSNH Q+   LLNS
Sbjct: 1   MAMDTLYDYQIWQPEEHEDDVNVTISNSHLLPCDCFLFHLHFRHVLQSNHPQELQRLLNS 60

Query: 61  SLSSFLIPCDVFFATASSILIAVFSGTGVAQDFLDTAVPDVLSVAADIACNPLNAGRTIL 120
           SLSSFLIPCD FFA+  SILIAVFS TGVAQDFLD AVPDVLSVAADIACNPLNAGR +L
Sbjct: 61  SLSSFLIPCDAFFASGFSILIAVFSDTGVAQDFLDAAVPDVLSVAADIACNPLNAGRRVL 120

Query: 121 PLAVSVLVVSPYNERQEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECR 180
           PLAVSVL VSPYNER+EIGRVLRESSPQ FKT PASE AIEGLK VEIDVGGELLIGECR
Sbjct: 121 PLAVSVLAVSPYNEREEIGRVLRESSPQEFKTSPASESAIEGLKTVEIDVGGELLIGECR 180

Query: 181 ICLDELMNGMEVTRLPCAHLYHRDCIVKWLETSHLCPLCRYAMPLS 227
           ICLDELMNGMEVTRLPCAH YHRDCIVKWLETSHLCPLCRYAMPLS
Sbjct: 181 ICLDELMNGMEVTRLPCAHFYHRDCIVKWLETSHLCPLCRYAMPLS 226

[Close]

BLAST of CsaV3_6G034420 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.5e-15
Identity = 33/92 (35.87%), Postives = 61/92 (66.30%), Query Frame = 0


Query: 136 QEIGRVLRESSPQAFKTLPASEMAIEGLKKVEIDVGGELL---IGECRICLDELMNGMEV 195
           +++ + L E+ P  + T PAS+ AI+ L  V+  V  ++L   + +C +C+DE  +G +V
Sbjct: 172 EQLIQQLAENDPNRYGTPPASKSAIDALPTVK--VTKDMLKSEMNQCAVCMDEFEDGSDV 231

Query: 196 TRLPCAHLYHRDCIVKWLETSHLCPLCRYAMP 225
            ++PC H++H+DC++ WLE  + CP+CR+ +P
Sbjct: 232 KQMPCKHVFHQDCLLPWLELHNSCPVCRFELP 261

[Close]

BLAST of CsaV3_6G034420 vs. TAIR 10
Match: AT1G55530.1 (RING/U-box superfamily protein )

HSP 1 Score: 76.3 bits (186), Expect = 3.6e-14
Identity = 34/83 (40.96%), Postives = 49/83 (59.04%), Query Frame = 0


Query: 142 LRESSPQAFKTLPASEMAIEGLKKVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLY 201
           L E+ P  + T PA + A+E L  V+I+   E L  +C +CLD+   G E   +PC H +
Sbjct: 191 LAENDPNRYGTPPAKKEAVEALATVKIE---ETL--QCSVCLDDFEIGTEAKLMPCTHKF 250

Query: 202 HRDCIVKWLETSHLCPLCRYAMP 225
           H DC++ WLE    CP+CRY +P
Sbjct: 251 HSDCLLPWLELHSSCPVCRYQLP 268

[Close]

BLAST of CsaV3_6G034420 vs. TAIR 10
Match: AT3G13430.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-13
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 150 FKTLPASEMAIEGLKKVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKW 209
           + T PA++ A+E L  V+I+    LL  +C +CLD+   GME   +PC H +H DC++ W
Sbjct: 200 YGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPW 259

Query: 210 LETSHLCPLCRYAMP 225
           LE    CP+CRY +P
Sbjct: 260 LELHSSCPVCRYLLP 270

[Close]

BLAST of CsaV3_6G034420 vs. TAIR 10
Match: AT3G13430.2 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-13
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 150 FKTLPASEMAIEGLKKVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKW 209
           + T PA++ A+E L  V+I+    LL  +C +CLD+   GME   +PC H +H DC++ W
Sbjct: 200 YGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPW 259

Query: 210 LETSHLCPLCRYAMP 225
           LE    CP+CRY +P
Sbjct: 260 LELHSSCPVCRYLLP 270

[Close]

BLAST of CsaV3_6G034420 vs. TAIR 10
Match: AT3G13430.3 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 2.4e-13
Identity = 32/75 (42.67%), Postives = 47/75 (62.67%), Query Frame = 0


Query: 150 FKTLPASEMAIEGLKKVEIDVGGELLIGECRICLDELMNGMEVTRLPCAHLYHRDCIVKW 209
           + T PA++ A+E L  V+I+    LL  +C +CLD+   GME   +PC H +H DC++ W
Sbjct: 200 YGTPPATKEAVEALAMVKIE--DSLL--QCSVCLDDFEIGMEAKEMPCKHKFHSDCLLPW 259

Query: 210 LETSHLCPLCRYAMP 225
           LE    CP+CRY +P
Sbjct: 260 LELHSSCPVCRYLLP 270

The following BLAST results are available for this feature:

BLAST of CsaV3_6G034420 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150446.1	7.4e-126	100.00	E3 ubiquitin-protein ligase RING1 [Cucumis sativus] >KGN47723.1 hypothetical pro...	[more]
XP_008466716.1	7.1e-121	96.02	PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis melo] >KAA0059921.1 E...	[more]
XP_038885922.1	1.0e-114	91.15	E3 ubiquitin-protein ligase RING1-like [Benincasa hispida]	[more]
XP_022990569.1	3.6e-112	89.82	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita maxima] >XP_022990570.1 pr...	[more]
XP_023554199.1	7.9e-112	89.38	probable E3 ubiquitin-protein ligase ATL45 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G034420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CH30	1.2e-14	33.58	E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV...	[more]
Q8LPN7	3.6e-14	35.87	E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19...	[more]
Q6AVN2	5.7e-12	38.55	E3 ubiquitin-protein ligase SIRP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SI...	[more]
Q9SNB6	4.8e-11	40.85	E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 ...	[more]
Q9SPL2	8.2e-11	40.00	E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV...	[more]

BLAST of CsaV3_6G034420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDU3	3.6e-126	100.00	RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385070 P...	[more]
A0A5A7V2F0	3.5e-121	96.02	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CS28	3.5e-121	96.02	E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103504063 P...	[more]
A0A6J1JSE1	1.7e-112	89.82	probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita maxima OX=3661 GN=LOC111...	[more]
A0A6J1HJY0	1.9e-111	88.94	probable E3 ubiquitin-protein ligase ATL45 OS=Cucurbita moschata OX=3662 GN=LOC1...	[more]

BLAST of CsaV3_6G034420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19950.1	2.5e-15	35.87	RING/U-box superfamily protein	[more]
AT1G55530.1	3.6e-14	40.96	RING/U-box superfamily protein	[more]
AT3G13430.1	2.4e-13	42.67	RING/U-box superfamily protein	[more]
AT3G13430.2	2.4e-13	42.67	RING/U-box superfamily protein	[more]
AT3G13430.3	2.4e-13	42.67	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 179..219 e-value: 5.5E-7 score: 39.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 178..220 e-value: 2.4E-13 score: 50.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 179..220 score: 12.931868
IPR011016	Zinc finger, RING-CH-type	SMART	SM00744	ringv_2	coord: 178..220 e-value: 0.0022 score: 12.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 142..225 e-value: 5.1E-19 score: 69.7
None	No IPR available	PANTHER	PTHR15710:SF120	F6A14.12 PROTEIN-RELATED	coord: 136..224
None	No IPR available	PANTHER	PTHR15710	E3 UBIQUITIN-PROTEIN LIGASE PRAJA	coord: 136..224
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 178..220 e-value: 1.41505E-15 score: 66.1713
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 178..224

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G034420.1	CsaV3_6G034420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008270	zinc ion binding