CsaV3_6G034320 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G034320
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionRetrotrans_gag domain-containing protein
Locationchr6: 19195530 .. 19195766 (-)
RNA-Seq ExpressionCsaV3_6G034320
SyntenyCsaV3_6G034320
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

mRNA sequence

ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

Coding sequence (CDS)

ATGGATTCGATAAGCTGCAAGAGAAGGAGGAATAAATTTGTTAAGGATTCAGAAAAGAATTTCAGAGAAGTTTATCCTTGTTCGTTTGTAGATGAAAATAGGAAAGGATTCCTAAGTTTAGAACAAGGTGATGCGACTATGGCAAAGTATGAGAAGAAATTCACCAAACTTGCAAAGCATGTGATGACCTTCGTAGGAGACGAAGAAGATATGTCAAGCGTTTTGAAGGGGCATTAA

Protein sequence

MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEEDMSSVLKGH*
Homology
BLAST of CsaV3_6G034320 vs. NCBI nr
Match: KGN47714.1 (hypothetical protein Csa_018314 [Cucumis sativus])

HSP 1 Score: 161.8 bits (408), Expect = 2.5e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60
          MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH
Sbjct: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60

Query: 61 VMTFVGDEEDMSSVLKGH 79
          VMTFVGDEEDMSSVLKGH
Sbjct: 61 VMTFVGDEEDMSSVLKGH 78

BLAST of CsaV3_6G034320 vs. NCBI nr
Match: KAA0025975.1 (uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 25  YPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEED 71
           YPCSF DE RK F+SL QGD T+ +YEK FT+LAK+ + FV DE D
Sbjct: 114 YPCSFCDEKRKKFMSLLQGDMTVIEYEKIFTELAKYTLDFVIDEVD 159

BLAST of CsaV3_6G034320 vs. NCBI nr
Match: TYK04211.1 (uncharacterized protein E5676_scaffold24967G00130 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.0e-06
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 25  YPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEED 71
           YPCSF DE RK F+SL QGD T+ +YEK FT+LAK+ + FV DE D
Sbjct: 128 YPCSFCDEKRKKFMSLLQGDMTVVEYEKIFTELAKYTVDFVIDEVD 173

BLAST of CsaV3_6G034320 vs. NCBI nr
Match: KAE8648186.1 (hypothetical protein Csa_018470 [Cucumis sativus])

HSP 1 Score: 61.2 bits (147), Expect = 4.5e-06
Identity = 30/57 (52.63%), Postives = 38/57 (66.67%), Query Frame = 0

Query: 16  DSEKNF--REVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEED 71
           D+EK     + YP SF D  R GF++L QGD T+ +YEK FTKLAK+ + FV DE D
Sbjct: 113 DAEKKALQNKFYPLSFCDAKRNGFVNLVQGDTTIVEYEKNFTKLAKYALAFVMDEAD 169

BLAST of CsaV3_6G034320 vs. NCBI nr
Match: TYJ95795.1 (uncharacterized protein E5676_scaffold110G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 5.9e-06
Identity = 30/61 (49.18%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 17 SEKNFRE-VYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEEDMSSVL 76
          S + F+E  Y  SFVD  RK FL+L+QG+ T+A+YE+KFTKLAK+V++ + D+ED    +
Sbjct: 11 SWEGFQEKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTKLAKYVISLIMDKEDKQVAM 70

BLAST of CsaV3_6G034320 vs. ExPASy TrEMBL
Match: A0A0A0KFT5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383020 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 1.2e-36
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0

Query: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60
          MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH
Sbjct: 1  MDSISCKRRRNKFVKDSEKNFREVYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKH 60

Query: 61 VMTFVGDEEDMSSVLKGH 79
          VMTFVGDEEDMSSVLKGH
Sbjct: 61 VMTFVGDEEDMSSVLKGH 78

BLAST of CsaV3_6G034320 vs. ExPASy TrEMBL
Match: A0A5D3BWX9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold24967G00130 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.9e-07
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 25  YPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEED 71
           YPCSF DE RK F+SL QGD T+ +YEK FT+LAK+ + FV DE D
Sbjct: 128 YPCSFCDEKRKKFMSLLQGDMTVVEYEKIFTELAKYTVDFVIDEVD 173

BLAST of CsaV3_6G034320 vs. ExPASy TrEMBL
Match: A0A5A7SND8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G002910 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 9.9e-07
Identity = 29/46 (63.04%), Postives = 35/46 (76.09%), Query Frame = 0

Query: 25  YPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEED 71
           YPCSF DE RK F+SL QGD T+ +YEK FT+LAK+ + FV DE D
Sbjct: 114 YPCSFCDEKRKKFMSLLQGDMTVIEYEKIFTELAKYTLDFVIDEVD 159

BLAST of CsaV3_6G034320 vs. ExPASy TrEMBL
Match: A0A5A7V337 (Aldehyde dehydrogenase family 3 member F1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00080 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 19  KNFRE-VYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEEDMS 73
           K F+E  YP  FVD  RK FL+L+QG+ T+A+YE KF +L K+V++F+ DEED S
Sbjct: 69  KGFQEKFYPHLFVDTKRKEFLNLKQGNMTIAEYENKFIELVKYVISFIMDEEDKS 123

BLAST of CsaV3_6G034320 vs. ExPASy TrEMBL
Match: A0A5A7V5R3 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold977G00040 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.9e-06
Identity = 30/61 (49.18%), Postives = 45/61 (73.77%), Query Frame = 0

Query: 17 SEKNFRE-VYPCSFVDENRKGFLSLEQGDATMAKYEKKFTKLAKHVMTFVGDEEDMSSVL 76
          S + F+E  Y  SFVD  RK FL+L+QG+ T+A+YE+KFTKLAK+V++ + D+ED    +
Sbjct: 11 SWEGFQEKFYTHSFVDAKRKEFLNLKQGNMTIAEYERKFTKLAKYVISLIMDKEDKQVAM 70

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN47714.12.5e-36100.00hypothetical protein Csa_018314 [Cucumis sativus][more]
KAA0025975.12.0e-0663.04uncharacterized protein E6C27_scaffold34G002910 [Cucumis melo var. makuwa][more]
TYK04211.12.0e-0663.04uncharacterized protein E5676_scaffold24967G00130 [Cucumis melo var. makuwa][more]
KAE8648186.14.5e-0652.63hypothetical protein Csa_018470 [Cucumis sativus][more]
TYJ95795.15.9e-0649.18uncharacterized protein E5676_scaffold110G00710 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KFT51.2e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G383020 PE=4 SV=1[more]
A0A5D3BWX99.9e-0763.04Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7SND89.9e-0763.04Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
A0A5A7V3372.9e-0654.55Aldehyde dehydrogenase family 3 member F1 OS=Cucumis melo var. makuwa OX=1194695... [more]
A0A5A7V5R32.9e-0649.18Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G034320.1CsaV3_6G034320.1mRNA