CsaV3_6G033960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G033960
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 18759785 .. 18760029 (-)
RNA-Seq ExpressionCsaV3_6G033960
SyntenyCsaV3_6G033960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTGCACACTCCTGCCCCACCACAATCGCGTCTCCGATCTTCCTCCAGACAAGCCGGTGGCGGCGTTCAGAAGCCCTGTGATTCGGGACAGAGTCGGCGGTAGGAAAATAAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTCCTCGGACATCCACAACCGCCCCAAACCCATTTCTAAAGATTT

mRNA sequence

ATGCATTGCACACTCCTGCCCCACCACAATCGCGTCTCCGATCTTCCTCCAGACAAGCCGGTGGCGGCGTTCAGAAGCCCTGTGATTCGGGACAGAGTCGGCGGTAGGAAAATAAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTCCTCGGACATCCACAACCGCCCCAAACCCATTTCTAAAGATTT

Coding sequence (CDS)

ATGCATTGCACACTCCTGCCCCACCACAATCGCGTCTCCGATCTTCCTCCAGACAAGCCGGTGGCGGCGTTCAGAAGCCCTGTGATTCGGGACAGAGTCGGCGGTAGGAAAATAAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTCCTCGGACATCCACAACCGCCCCAAACCCATTTCTAAAGATTT

Protein sequence

MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKDX
Homology
BLAST of CsaV3_6G033960 vs. NCBI nr
Match: KAE8647260.1 (hypothetical protein Csa_018328, partial [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60
          MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60

Query: 61 LISLFRPSSDIHNRPKPISKD 82
          LISLFRPSSDIHNRPKPISKD
Sbjct: 61 LISLFRPSSDIHNRPKPISKD 81

BLAST of CsaV3_6G033960 vs. NCBI nr
Match: KAG6602131.1 (hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 38/71 (53.52%), Postives = 46/71 (64.79%), Query Frame = 0

Query: 12  VSDLPPDKPVAAFRSP-VIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSD 71
           V  L P  P  A  S   +  R G  K+KSVIPK+RKLVKTM+YH +K+F+ SLFR    
Sbjct: 92  VLPLTPATPETAVTSTNSLGYRAGVGKVKSVIPKKRKLVKTMMYHCIKNFIKSLFRRPPK 151

Query: 72  IHNRPKPISKD 82
            HNRPKPI+ D
Sbjct: 152 THNRPKPITDD 162

BLAST of CsaV3_6G033960 vs. NCBI nr
Match: KAG6602134.1 (hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 68.9 bits (167), Expect = 2.3e-08
Identity = 41/72 (56.94%), Postives = 46/72 (63.89%), Query Frame = 0

Query: 12  VSDLPPDKPVAAFRSP-VIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSD 71
           V  L P KP  A  S   +  R G  K+KSVIPK+RKLVKTM+YH +KDFL SLFRP   
Sbjct: 61  VLPLIPAKPDTAVTSTNSVEYRAGIGKVKSVIPKKRKLVKTMMYHCIKDFLKSLFRPPPK 120

Query: 72  IH-NRPKPISKD 82
            H  RPKPI  D
Sbjct: 121 THRRRPKPIIHD 132

BLAST of CsaV3_6G033960 vs. NCBI nr
Match: KAG6602132.1 (hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 1.1e-07
Identity = 33/48 (68.75%), Postives = 39/48 (81.25%), Query Frame = 0

Query: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPIS 80
           RVG  K KSVIPK+RKLVKTM+YH +K+FL SLFR   + HNRPKPI+
Sbjct: 93  RVGIGKGKSVIPKRRKLVKTMMYHCIKNFLKSLFRRPPETHNRPKPIT 140

BLAST of CsaV3_6G033960 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 60.5 bits (145), Expect = 8.0e-06
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 13 SDLPPDKPV-----AAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRP 72
          ++L P+ PV     A   +  I  R GG K+KSVIPK+R LVKTMIY+ +KDF+ISLFRP
Sbjct: 23 TELAPNNPVMISEMAVTANGAIGSRAGG-KVKSVIPKRRILVKTMIYNFIKDFIISLFRP 82

Query: 73 SSDIHNRPKP 78
                 P P
Sbjct: 83 PPSAVPEPPP 91

BLAST of CsaV3_6G033960 vs. ExPASy TrEMBL
Match: A0A0A0KDQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 7.8e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0

Query: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60
          MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60

Query: 61 LISLFRPSSDIHNRPKPISKD 82
          LISLFRPSSDIHNRPKPISKD
Sbjct: 61 LISLFRPSSDIHNRPKPISKD 81

BLAST of CsaV3_6G033960 vs. ExPASy TrEMBL
Match: A0A6J1CJW3 (uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011963 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.9e-06
Identity = 35/70 (50.00%), Postives = 44/70 (62.86%), Query Frame = 0

Query: 13 SDLPPDKPV-----AAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRP 72
          ++L P+ PV     A   +  I  R GG K+KSVIPK+R LVKTMIY+ +KDF+ISLFRP
Sbjct: 23 TELAPNNPVMISEMAVTANGAIGSRAGG-KVKSVIPKRRILVKTMIYNFIKDFIISLFRP 82

Query: 73 SSDIHNRPKP 78
                 P P
Sbjct: 83 PPSAVPEPPP 91

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8647260.11.6e-38100.00hypothetical protein Csa_018328, partial [Cucumis sativus][more]
KAG6602131.12.3e-0853.52hypothetical protein SDJN03_07364, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602134.12.3e-0856.94hypothetical protein SDJN03_07367, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6602132.11.1e-0768.75hypothetical protein SDJN03_07365, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022141661.18.0e-0650.00uncharacterized protein LOC111011963 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDQ77.8e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
A0A6J1CJW33.9e-0650.00uncharacterized protein LOC111011963 OS=Momordica charantia OX=3673 GN=LOC111011... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G033960.1CsaV3_6G033960.1mRNA