CsaV3_6G033940 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G033940
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 18742500 .. 18742794 (+)
RNA-Seq ExpressionCsaV3_6G033940
SyntenyCsaV3_6G033940
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGATGTAACAGCCATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGTCAGAAGAATCCCATTCAACTAACCTCACGCTTTGCTCGTGACTTTTCTCGTTTTAGGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

mRNA sequence

ATGGAAGATGTAACAGCCATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

Coding sequence (CDS)

ATGGAAGATGTAACAGCCATGGCTGAGCAGCAGAGCTTCCGCCGCACAGAGGCAGTTAACGGTGAACGGAGCCGCCGTGGGGGCGCTTTAGACGGCCGGATTTGTCTGTTGCCGAACACGAGCGAGTTTCAGTGGGATGCATCCGCCGATCTATCTTTCGGGCCGACCCAAAACAATAGGTTTGGGCTCCATATTGGGCCTGTGTTTTGGATTCATGAAGCCCGTTTCTCATCTTAA

Protein sequence

MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNRFGLHIGPVFWIHEARFSS*
Homology
[Close]
BLAST of CsaV3_6G033940 vs. NCBI nr
Match: KGN47676.1 (hypothetical protein Csa_018273 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 1.3e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR 60
          MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR
Sbjct: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR 60

Query: 61 FGLHIGPVFWIHEARFSS 79
          FGLHIGPVFWIHEARFSS
Sbjct: 61 FGLHIGPVFWIHEARFSS 78

[Close]
BLAST of CsaV3_6G033940 vs. NCBI nr
Match: KAG6585261.1 (Phosphatidylinositol 4-kinase gamma 7, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 57.4 bits (137), Expect = 6.5e-05
Identity = 31/44 (70.45%), Postives = 34/44 (77.27%), Query Frame = 0 

Query: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQ 45
          M+D TAMA+QQS RR EAV GER  R GAL+ RICL PNT EFQ
Sbjct: 1  MKDKTAMADQQSCRRLEAVIGERCCRCGALNRRICLPPNTIEFQ 44

[Close]
BLAST of CsaV3_6G033940 vs. ExPASy TrEMBL
Match: A0A0A0KIS7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G373200 PE=4 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 6.3e-38
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR 60
          MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR
Sbjct: 1  MEDVTAMAEQQSFRRTEAVNGERSRRGGALDGRICLLPNTSEFQWDASADLSFGPTQNNR 60

Query: 61 FGLHIGPVFWIHEARFSS 79
          FGLHIGPVFWIHEARFSS
Sbjct: 61 FGLHIGPVFWIHEARFSS 78

The following BLAST results are available for this feature:
BLAST of CsaV3_6G033940 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47676.11.3e-37100.00hypothetical protein Csa_018273 [Cucumis sativus][more]
KAG6585261.16.5e-0570.45Phosphatidylinositol 4-kinase gamma 7, partial [Cucurbita argyrosperma subsp. so... [more]
BLAST of CsaV3_6G033940 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G033940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KIS76.3e-38100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G373200 PE=4 SV=1[more]
BLAST of CsaV3_6G033940 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G033940.1CsaV3_6G033940.1mRNA