CsaV3_6G031190 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G031190
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Pentatricopeptide repeat-containing protein
Location	chr6: 17406251 .. 17406490 (-)
RNA-Seq Expression	CsaV3_6G031190
Synteny	CsaV3_6G031190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTGTGTCTGCGGCCTCGATACTCAATCGCCTTCTTTCCCGTAAGAACCTGACCGCCAGAAGTGAATTTACCGACGCCAATGCCGCCACCAGCACTATCCTTAGATACCTAGAAGAGGGTCGCCTCGGAAAAGCTGTCTTGATCCTGTTCAATTCTCCATTTCCTTTTCCTCATACACTGTACACTCGCCTCTTCCAACTTTGCTCTTCCACTCGCGCACTCGTTGAAGCTCGAAAG

mRNA sequence

ATGGGTGTGTCTGCGGCCTCGATACTCAATCGCCTTCTTTCCCGTAAGAACCTGACCGCCAGAAGTGAATTTACCGACGCCAATGCCGCCACCAGCACTATCCTTAGATACCTAGAAGAGGGTCGCCTCGGAAAAGCTGTCTTGATCCTGTTCAATTCTCCATTTCCTTTTCCTCATACACTGTACACTCGCCTCTTCCAACTTTGCTCTTCCACTCGCGCACTCGTTGAAGCTCGAAAG

Coding sequence (CDS)

ATGGGTGTGTCTGCGGCCTCGATACTCAATCGCCTTCTTTCCCGTAAGAACCTGACCGCCAGAAGTGAATTTACCGACGCCAATGCCGCCACCAGCACTATCCTTAGATACCTAGAAGAGGGTCGCCTCGGAAAAGCTGTCTTGATCCTGTTCAATTCTCCATTTCCTTTTCCTCATACACTGTACACTCGCCTCTTCCAACTTTGCTCTTCCACTCGCGCACTCGTTGAAGCTCGAAAG

Protein sequence

MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHTLYTRLFQLCSSTRALVEARK

Homology

[Close]

BLAST of CsaV3_6G031190 vs. NCBI nr
Match: XP_004144297.1 (pentatricopeptide repeat-containing protein At3g26540 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.3e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT
Sbjct: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LYTRLFQLCSSTRALVEARK
Sbjct: 61 LYTRLFQLCSSTRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. NCBI nr
Match: KAE8647195.1 (hypothetical protein Csa_019025, partial [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 2.3e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT
Sbjct: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LYTRLFQLCSSTRALVEARK
Sbjct: 61 LYTRLFQLCSSTRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. NCBI nr
Match: XP_008441583.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g26540 [Cucumis melo] >TYK23784.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.4 bits (376), Expect = 1.3e-32
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLS KNLTAR EFTDANAATSTILRYLE+GRLGKAVLILFNSPFPFPHT
Sbjct: 1  MGVSAASILNRLLSAKNLTARREFTDANAATSTILRYLEKGRLGKAVLILFNSPFPFPHT 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LYTRLFQLCSSTRALVEARK
Sbjct: 61 LYTRLFQLCSSTRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. NCBI nr
Match: XP_038884263.1 (pentatricopeptide repeat-containing protein At3g26540 [Benincasa hispida])

HSP 1 Score: 126.7 bits (317), Expect = 8.9e-26
Identity = 64/80 (80.00%), Postives = 72/80 (90.00%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLSRKNLTAR+E T A AA +T+L+YL+EGRL KAVL+LF+SPFPFPH 
Sbjct: 1  MGVSAASILNRLLSRKNLTARTEPTGAKAAATTVLKYLKEGRLRKAVLVLFDSPFPFPHP 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LY RLFQ+CSS RALVEARK
Sbjct: 61 LYARLFQICSSNRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. NCBI nr
Match: KAG6578928.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 125.2 bits (313), Expect = 2.6e-25
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLS KNL+AR++ T A AA +T+L+YLEEGRL KAV +LFNSPFPFPH 
Sbjct: 1  MGVSAASILNRLLSHKNLSARTQPTGAKAAATTVLKYLEEGRLRKAVSVLFNSPFPFPHP 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LY RLFQ+CSSTRALVEARK
Sbjct: 61 LYARLFQICSSTRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. ExPASy TrEMBL
Match: A0A0A0KFE0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G344820 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.1e-34
Identity = 80/80 (100.00%), Postives = 80/80 (100.00%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT
Sbjct: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LYTRLFQLCSSTRALVEARK
Sbjct: 61 LYTRLFQLCSSTRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. ExPASy TrEMBL
Match: A0A5D3DJG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1607G001110 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.2e-33
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLS KNLTAR EFTDANAATSTILRYLE+GRLGKAVLILFNSPFPFPHT
Sbjct: 1  MGVSAASILNRLLSAKNLTARREFTDANAATSTILRYLEKGRLGKAVLILFNSPFPFPHT 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LYTRLFQLCSSTRALVEARK
Sbjct: 61 LYTRLFQLCSSTRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. ExPASy TrEMBL
Match: A0A1S3B4H5 (pentatricopeptide repeat-containing protein At3g26540 OS=Cucumis melo OX=3656 GN=LOC103485666 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 6.2e-33
Identity = 77/80 (96.25%), Postives = 78/80 (97.50%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLS KNLTAR EFTDANAATSTILRYLE+GRLGKAVLILFNSPFPFPHT
Sbjct: 1  MGVSAASILNRLLSAKNLTARREFTDANAATSTILRYLEKGRLGKAVLILFNSPFPFPHT 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LYTRLFQLCSSTRALVEARK
Sbjct: 61 LYTRLFQLCSSTRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. ExPASy TrEMBL
Match: A0A6J1FD79 (pentatricopeptide repeat-containing protein At3g26540 OS=Cucurbita moschata OX=3662 GN=LOC111444693 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 3.6e-25
Identity = 63/80 (78.75%), Postives = 71/80 (88.75%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLS KNL+AR++ T A AA +TIL+YLEEGRL KAV +LF+SPFPFPH 
Sbjct: 1  MGVSAASILNRLLSHKNLSARTQPTGAKAAATTILKYLEEGRLRKAVSVLFDSPFPFPHP 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LY RLFQ+CSSTRALVEARK
Sbjct: 61 LYARLFQICSSTRALVEARK 80

[Close]

BLAST of CsaV3_6G031190 vs. ExPASy TrEMBL
Match: A0A6J1K1B7 (pentatricopeptide repeat-containing protein At3g26540 OS=Cucurbita maxima OX=3661 GN=LOC111489740 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.1e-24
Identity = 62/80 (77.50%), Postives = 70/80 (87.50%), Query Frame = 0


Query: 1  MGVSAASILNRLLSRKNLTARSEFTDANAATSTILRYLEEGRLGKAVLILFNSPFPFPHT 60
          MGVSAASILNRLLS KNL+AR++ T A A  +TIL+YLEEGRL KAV +LF+SPFPFPH 
Sbjct: 1  MGVSAASILNRLLSHKNLSARTQPTGAKAVATTILKYLEEGRLRKAVSVLFDSPFPFPHP 60

Query: 61 LYTRLFQLCSSTRALVEARK 81
          LY RLFQ+CSSTRALVEARK
Sbjct: 61 LYARLFQICSSTRALVEARK 80

The following BLAST results are available for this feature:

BLAST of CsaV3_6G031190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004144297.1	2.3e-34	100.00	pentatricopeptide repeat-containing protein At3g26540 [Cucumis sativus]	[more]
KAE8647195.1	2.3e-34	100.00	hypothetical protein Csa_019025, partial [Cucumis sativus]	[more]
XP_008441583.1	1.3e-32	96.25	PREDICTED: pentatricopeptide repeat-containing protein At3g26540 [Cucumis melo] ...	[more]
XP_038884263.1	8.9e-26	80.00	pentatricopeptide repeat-containing protein At3g26540 [Benincasa hispida]	[more]
KAG6578928.1	2.6e-25	78.75	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of CsaV3_6G031190 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G031190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFE0	1.1e-34	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G344820 PE=4 SV=1	[more]
A0A5D3DJG9	6.2e-33	96.25	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S3B4H5	6.2e-33	96.25	pentatricopeptide repeat-containing protein At3g26540 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1FD79	3.6e-25	78.75	pentatricopeptide repeat-containing protein At3g26540 OS=Cucurbita moschata OX=3...	[more]
A0A6J1K1B7	1.1e-24	77.50	pentatricopeptide repeat-containing protein At3g26540 OS=Cucurbita maxima OX=366...	[more]

BLAST of CsaV3_6G031190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	OS07G0578800 PROTEIN-RELATED	coord: 3..76
None	No IPR available	PANTHER	PTHR24015:SF72	OSJNBA0006B20.8 PROTEIN	coord: 3..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G031190.1	CsaV3_6G031190.1	mRNA