CsaV3_6G031080 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G031080
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 17331606 .. 17332289 (-)
RNA-Seq Expression	CsaV3_6G031080
Synteny	CsaV3_6G031080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTATACATTATCAGTTTTAAACCTACATAGTTGCTAAAATAATAAATTCTGATAATAATTTTTTTGAAATTATGTGAGTTAAGTGTTGTGATATTGTCTTTAATCAAGAGTAAACTTGTGATTGATAATAAATAAAAATAAAATTAATCTTTTACGTCTATGGTTAATATCTTTAAATTTAATATTTTTTCGTCACTGAAGATATTTTTTTGTATTGAGATAGGTTGAAAATGGAGCCAAAAGAGGACAGAAACGGCGGAGAAAAGAGCATTGTGGTGGAAGCACCAACTTAGGCGCCGTGGGGCTCTGGTCGGCACCTCAACAAAAGGTGACCTTCACCAAAGTGCTGCACTTCGACATGGAAGTCAGAGCGCAGCAGTGCTCACTCTCAAAGACCTATTTGAAGGCAGATGACGTTTTGAGGCTCTATATTTAATTTGTTGGAGTTTTGCTGTAATGTAATTTTAATTTTTTTTTATTAATCGAATCAATTTAAATATATTAATTTAATTAATTCCTTTAGGTGAGGCTCTATATTTTGTTGGAGTTTTGCTGTAAAATTCTACCTTAATTAGGATAAAGGTTTTCGACTAATTATCTACTTCTTCTTTTTTAATTTGACCACAGTGGGAGTCGAACCCACGACCTTCTGATCCGAAGTCAGACGCGCTAATCCAC

mRNA sequence

ATGAGGGTTGAAAATGGAGCCAAAAGAGGACAGAAACGGCGGAGAAAAGAGCATTGTGGTGGAAGCACCAACTTAGGCGCCGTGGGGCTCTGGTCGGCACCTCAACAAAAGGTGACCTTCACCAAAGTGCTGCACTTCGACATGGAAGTCAGAGCGCAGCAGTGCTCACTCTCAAAGACCTATTTGAAGGCAGATGACGTTTTGAGGCTCTATATTTAA

Coding sequence (CDS)

ATGAGGGTTGAAAATGGAGCCAAAAGAGGACAGAAACGGCGGAGAAAAGAGCATTGTGGTGGAAGCACCAACTTAGGCGCCGTGGGGCTCTGGTCGGCACCTCAACAAAAGGTGACCTTCACCAAAGTGCTGCACTTCGACATGGAAGTCAGAGCGCAGCAGTGCTCACTCTCAAAGACCTATTTGAAGGCAGATGACGTTTTGAGGCTCTATATTTAA

Protein sequence

MRVENGAKRGQKRRRKEHCGGSTNLGAVGLWSAPQQKVTFTKVLHFDMEVRAQQCSLSKTYLKADDVLRLYI*

Homology

[Close]

BLAST of CsaV3_6G031080 vs. NCBI nr
Match: KGN47493.1 (hypothetical protein Csa_019066 [Cucumis sativus])

HSP 1 Score: 148.7 bits (374), Expect = 2.0e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MRVENGAKRGQKRRRKEHCGGSTNLGAVGLWSAPQQKVTFTKVLHFDMEVRAQQCSLSKT 60
          MRVENGAKRGQKRRRKEHCGGSTNLGAVGLWSAPQQKVTFTKVLHFDMEVRAQQCSLSKT
Sbjct: 1  MRVENGAKRGQKRRRKEHCGGSTNLGAVGLWSAPQQKVTFTKVLHFDMEVRAQQCSLSKT 60

Query: 61 YLKADDVLRLYI 73
          YLKADDVLRLYI
Sbjct: 61 YLKADDVLRLYI 72

[Close]

BLAST of CsaV3_6G031080 vs. ExPASy TrEMBL
Match: A0A0A0KDC8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G344220 PE=4 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 9.7e-33
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0


Query: 1  MRVENGAKRGQKRRRKEHCGGSTNLGAVGLWSAPQQKVTFTKVLHFDMEVRAQQCSLSKT 60
          MRVENGAKRGQKRRRKEHCGGSTNLGAVGLWSAPQQKVTFTKVLHFDMEVRAQQCSLSKT
Sbjct: 1  MRVENGAKRGQKRRRKEHCGGSTNLGAVGLWSAPQQKVTFTKVLHFDMEVRAQQCSLSKT 60

Query: 61 YLKADDVLRLYI 73
          YLKADDVLRLYI
Sbjct: 61 YLKADDVLRLYI 72

The following BLAST results are available for this feature:

BLAST of CsaV3_6G031080 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47493.1	2.0e-32	100.00	hypothetical protein Csa_019066 [Cucumis sativus]	[more]

BLAST of CsaV3_6G031080 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G031080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDC8	9.7e-33	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G344220 PE=4 SV=1	[more]

BLAST of CsaV3_6G031080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G031080.1	CsaV3_6G031080.1	mRNA