CsaV3_6G028550 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G028550
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 16827106 .. 16828064 (+)
RNA-Seq Expression	CsaV3_6G028550
Synteny	CsaV3_6G028550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCCATATATATTATCTCTTCGCAGTGTACAAAACAGTGGTCACACTTTTACCTTTATATATATGCTTCATTTTTTCCCTAATTCATACCATATTATCCTTCCAATTCTCAAACAAATCATAAGGTAACTTTTTTAAACATCAAATTCTTTCCTGATTTTGCCTTTTATTTACTGAATTCAAGCTTTGTTTTTCCTCTTCCTTTAGGGTTTTGCAGTAATGATTATGATGAAGAGGGTGCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCTGTTATTGTCGAGAAGAAGGGTGCACGTAAGCTAGCTCAAGGCTTCAGTGAGCGAAGAACCCCCAAAGCAGGAGTGTTCAACGATGCAAATGAGTCTGACCTTGAGAACACTGATGTTGCTCCTGACGACGTTGTAGCTAACAACAACGTTAACGATGACAATGAAGATGACGATGCCAATCTTGGTTATAAAAATTACGGAAAGGGCTCTGATACTGAAACTCACCGATACTTCTCAAGTGATAAGCCATATAGACCCTAGAAAGTCTTTCTAAGATCATCATCACCATTGTCTTCGTCTTCGTCCAAGGTAGTCAATTGTAAAGACATGAAGTGTTTTTCTGTGTTGCAATAAACTGTGAAATGTGCATGGGATGTGCCTGCTTTATAAGAGCTAAGCCCTATAGTTAAAAAGAGATGGTTGGCTTTATATTAAGCATGGCAAGCTTTTGGCATTTCATAGAGTTTGATGTTCGATGTGTGTTGTGAAAAATAGAATATATTTTGAATAATGTGGATGAAATCAAAATATATTATGTGTATCATAAATTATATGCTATGGCGTTATGATTTTGGGTCTTGTAACTATTTTATGAAAGGAAAAATGACTAATATAAAGTTGGTGATGATCTTAATCTTATTATTAGTAATATAAACTTGCCAGTTCATGTTCT

mRNA sequence

ATGATTATGATGAAGAGGGTGCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCTGTTATTGTCGAGAAGAAGGGTGCACGTAAGCTAGCTCAAGGCTTCAGTGAGCGAAGAACCCCCAAAGCAGGAGTGTTCAACGATGCAAATGAGTCTGACCTTGAGAACACTGATGTTGCTCCTGACGACGTTGTAGCTAACAACAACGTTAACGATGACAATGAAGATGACGATGCCAATCTTGGTTATAAAAATTACGGAAAGGGCTCTGATACTGAAACTCACCGATACTTCTCAAGTGATAAGCCATATAGACCCTAG

Coding sequence (CDS)

ATGATTATGATGAAGAGGGTGCTTCTTCTCTTTGCTGCCTTGTTGTTGCTCCTCATGGCAGACGCTGTTATTGTCGAGAAGAAGGGTGCACGTAAGCTAGCTCAAGGCTTCAGTGAGCGAAGAACCCCCAAAGCAGGAGTGTTCAACGATGCAAATGAGTCTGACCTTGAGAACACTGATGTTGCTCCTGACGACGTTGTAGCTAACAACAACGTTAACGATGACAATGAAGATGACGATGCCAATCTTGGTTATAAAAATTACGGAAAGGGCTCTGATACTGAAACTCACCGATACTTCTCAAGTGATAAGCCATATAGACCCTAG

Protein sequence

MIMMKRVLLLFAALLLLLMADAVIVEKKGARKLAQGFSERRTPKAGVFNDANESDLENTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP*

Homology

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BLAST of CsaV3_6G028550 vs. NCBI nr
Match: XP_004150985.1 (uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical protein Csa_021763 [Cucumis sativus])

HSP 1 Score: 200.3 bits (508), Expect = 8.6e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MIMMKRVLLLFAALLLLLMADAVIVEKKGARKLAQGFSERRTPKAGVFNDANESDLENTD 60
           MIMMKRVLLLFAALLLLLMADAVIVEKKGARKLAQGFSERRTPKAGVFNDANESDLENTD
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAVIVEKKGARKLAQGFSERRTPKAGVFNDANESDLENTD 60

Query: 61  VAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 109
           VAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP
Sbjct: 61  VAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

[Close]

BLAST of CsaV3_6G028550 vs. NCBI nr
Match: TYK02960.1 (uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa])

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 91/109 (83.49%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 3   MMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLENT 62
           MMKRVLLLFA LLLLLMADA    +VEKKGARKLAQG  +RR PKA VFNDANE +L+ T
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKKT 60

Query: 63  DVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 109
           DVAPDDVVANN  NDDNEDDD NLGYKNYGKGSDTETHRYFSSDKPYRP
Sbjct: 61  DVAPDDVVANNIDNDDNEDDDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

[Close]

BLAST of CsaV3_6G028550 vs. NCBI nr
Match: KAG6594018.1 (hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sororia] >KAG7026358.1 hypothetical protein SDJN02_12860, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 104.0 bits (258), Expect = 8.4e-19
Identity = 68/111 (61.26%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 1   MIMMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLE 60
           M MMKR LLLFA  LLL+  DA    +++KK ARKLAQ FS  + PK GVF     S  E
Sbjct: 1   MTMMKRTLLLFAVFLLLVFTDATMHSVIKKKDARKLAQSFS-GQIPKTGVFGGVKYS--E 60

Query: 61  NTDVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 109
           + DVA  DV  NNN     ++DD NLGYKNYGKGSDTETHRYFSS+KPYRP
Sbjct: 61  DADVAQADVGMNNN----EDEDDENLGYKNYGKGSDTETHRYFSSEKPYRP 104

[Close]

BLAST of CsaV3_6G028550 vs. NCBI nr
Match: KAG6575119.1 (hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 6.0e-17
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 3   MMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLENT 62
           MMK+VL+L    LLL+M DA    +VEKK ARKLA+    + TP+  VF+   E   E+ 
Sbjct: 1   MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 60

Query: 63  D-VAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 109
           + V   DVV N + N++ +DDD NLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 61  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 110

[Close]

BLAST of CsaV3_6G028550 vs. NCBI nr
Match: KAG7013689.1 (hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 97.8 bits (242), Expect = 6.0e-17
Identity = 62/110 (56.36%), Postives = 76/110 (69.09%), Query Frame = 0


Query: 3   MMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLENT 62
           MMK+VL+L    LLL+M DA    +VEKK ARKLA+    + TP+  VF+   E   E+ 
Sbjct: 21  MMKKVLVLLVVSLLLVMGDAAMHGVVEKKHARKLARSLGGQTTPETEVFSGVYEHGPEDV 80

Query: 63  D-VAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 109
           + V   DVV N + N++ +DDD NLGYKNYGKGSDTETHRYFSSDKPY P
Sbjct: 81  EVVVVADVVTNIDNNNNVDDDDENLGYKNYGKGSDTETHRYFSSDKPYEP 130

[Close]

BLAST of CsaV3_6G028550 vs. ExPASy TrEMBL
Match: A0A0A0KGD6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1)

HSP 1 Score: 200.3 bits (508), Expect = 4.2e-48
Identity = 108/108 (100.00%), Postives = 108/108 (100.00%), Query Frame = 0


Query: 1   MIMMKRVLLLFAALLLLLMADAVIVEKKGARKLAQGFSERRTPKAGVFNDANESDLENTD 60
           MIMMKRVLLLFAALLLLLMADAVIVEKKGARKLAQGFSERRTPKAGVFNDANESDLENTD
Sbjct: 1   MIMMKRVLLLFAALLLLLMADAVIVEKKGARKLAQGFSERRTPKAGVFNDANESDLENTD 60

Query: 61  VAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 109
           VAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP
Sbjct: 61  VAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 108

[Close]

BLAST of CsaV3_6G028550 vs. ExPASy TrEMBL
Match: A0A5D3BV16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00430 PE=4 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 7.4e-37
Identity = 91/109 (83.49%), Postives = 95/109 (87.16%), Query Frame = 0


Query: 3   MMKRVLLLFAALLLLLMADAV---IVEKKGARKLAQGFSERRTPKAGVFNDANESDLENT 62
           MMKRVLLLFA LLLLLMADA    +VEKKGARKLAQG  +RR PKA VFNDANE +L+ T
Sbjct: 1   MMKRVLLLFAVLLLLLMADAAMSNVVEKKGARKLAQGSGDRRIPKAEVFNDANEPELKKT 60

Query: 63  DVAPDDVVANNNVNDDNEDDDANLGYKNYGKGSDTETHRYFSSDKPYRP 109
           DVAPDDVVANN  NDDNEDDD NLGYKNYGKGSDTETHRYFSSDKPYRP
Sbjct: 61  DVAPDDVVANNIDNDDNEDDDVNLGYKNYGKGSDTETHRYFSSDKPYRP 109

The following BLAST results are available for this feature:

BLAST of CsaV3_6G028550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150985.1	8.6e-48	100.00	uncharacterized protein LOC101207042 [Cucumis sativus] >KGN47457.1 hypothetical ...	[more]
TYK02960.1	1.5e-36	83.49	uncharacterized protein E5676_scaffold46G00430 [Cucumis melo var. makuwa]	[more]
KAG6594018.1	8.4e-19	61.26	hypothetical protein SDJN03_13494, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6575119.1	6.0e-17	56.36	hypothetical protein SDJN03_25758, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7013689.1	6.0e-17	56.36	hypothetical protein SDJN02_23856, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CsaV3_6G028550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G028550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KGD6	4.2e-48	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G327960 PE=4 SV=1	[more]
A0A5D3BV16	7.4e-37	83.49	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CsaV3_6G028550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..108
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 91..108

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G028550.1	CsaV3_6G028550.1	mRNA