CsaV3_6G028490 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G028490
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 16763387 .. 16763556 (-)
RNA-Seq Expression	CsaV3_6G028490
Synteny	CsaV3_6G028490

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCA

mRNA sequence

ATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCA

Coding sequence (CDS)

ATGGCGGTGCCAAATTCTCGCCCCTGGAAGAAACTCCGGGCTGCAGCTTCCGCTAAATCAAAACCAAATTCATCTCGAATTCACGCCGAAGACAAACTTCAACTTCAAGTTTTCTGTAGCGGTGATCTTCGGCGTTTGCAGCGTTTTCTCTCGAATCGGTTTCACTCTCA

Protein sequence

MAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHSX

Homology

[Close]

BLAST of CsaV3_6G028490 vs. NCBI nr
Match: KAE8647153.1 (hypothetical protein Csa_021764, partial [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 7.3e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHS 57
          MAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHS
Sbjct: 1  MAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHS 56

[Close]

BLAST of CsaV3_6G028490 vs. NCBI nr
Match: KAE8637115.1 (hypothetical protein CSA_004592 [Cucumis sativus])

HSP 1 Score: 113.2 bits (282), Expect = 7.3e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0


Query: 1  MAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHS 57
          MAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHS
Sbjct: 18 MAVPNSRPWKKLRAAASAKSKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFHS 73

[Close]

BLAST of CsaV3_6G028490 vs. ExPASy TrEMBL
Match: A0A0A0KF56 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326160 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 3.6e-11
Identity = 42/61 (68.85%), Postives = 43/61 (70.49%), Query Frame = 0


Query: 4  PNSRPWKKLRAAASAKS--------KPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH 57
          P  RPW+    A    S        KPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH
Sbjct: 14 PCRRPWRCQILAPGRNSGLQLPLNHKPNSSRIHAEDKLQLQVFCSGDLRRLQRFLSNRFH 73

The following BLAST results are available for this feature:

BLAST of CsaV3_6G028490 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647153.1	7.3e-22	100.00	hypothetical protein Csa_021764, partial [Cucumis sativus]	[more]
KAE8637115.1	7.3e-22	100.00	hypothetical protein CSA_004592 [Cucumis sativus]	[more]

BLAST of CsaV3_6G028490 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G028490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KF56	3.6e-11	68.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G326160 PE=4 SV=1	[more]

BLAST of CsaV3_6G028490 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G028490.1	CsaV3_6G028490.1	mRNA