CsaV3_6G025280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G025280
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 16030761 .. 16031222 (-)
RNA-Seq ExpressionCsaV3_6G025280
SyntenyCsaV3_6G025280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGACCTCTTTCCCTTCTGCCCACTCTCCGTTCATACGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCTGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCCTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAGCCCTAGCCTCTGTCCGACCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGACTGCCGCTCGGGATGTAGTTGTAGATACGTTAGTCTTAGTGGGTCGTTGGCTCCACCTCTTATCTCCTTCTACGACATGCTGTTGTCGTCGCCATATGGAATATGTAACTTAG

mRNA sequence

ATGAGGACCTCTTTCCCTTCTGCCCACTCTCCGTTCATACGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCTGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCCTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAGCCCTAGCCTCTGTCCGACCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGACTGCCGCTCGGGATGTAGTTGTAGATACGTTAGTCTTAGTGGGTCGTTGGCTCCACCTCTTATCTCCTTCTACGACATGCTGTTGTCGTCGCCATATGGAATATGTAACTTAG

Coding sequence (CDS)

ATGAGGACCTCTTTCCCTTCTGCCCACTCTCCGTTCATACGGTTCTCAAAGCAGAGGAGGAAGGGTGGGCTGCAGGTACCACGAGCCCTCTGTCCCACACATCTATCCAGAAGCAAGTGTAGTTCACCGGTTCCACCGAATGCTCCTATCTCTCGGCAAAGATCGTGTGAGTGTGCAGTTATGCTTCGGATGCTTCGCCATAGAATAGATCAACCCAGTTCCCCTTCTTTTCCGGTGCACTCGCTTTATATCTCCGACACACAAGGAAGGACGCGGTGGGAAGAAAGCAGCCCTAGCCTCTGTCCGACCGATCATTCCGCTGGCATCTTGCATTCACGCCTCCGTTTGACTGCCGCTCGGGATGTAGTTGTAGATACGTTAGTCTTAGTGGGTCGTTGGCTCCACCTCTTATCTCCTTCTACGACATGCTGTTGTCGTCGCCATATGGAATATGTAACTTAG

Protein sequence

MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAVMLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAARDVVVDTLVLVGRWLHLLSPSTTCCCRRHMEYVT*
Homology
[Close]
BLAST of CsaV3_6G025280 vs. NCBI nr
Match: KAE8647125.1 (hypothetical protein Csa_021537 [Cucumis sativus] >KAE8647131.1 hypothetical protein Csa_021542 [Cucumis sativus])

HSP 1 Score: 320.9 bits (821), Expect = 6.2e-84
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR
Sbjct: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120

Query: 121 DVVVDTLVLVGRWLHLLSPSTTCCCRRHMEYVT 154
           DVVVDTLVLVGRWLHLLSPSTTCCCRRHMEYVT
Sbjct: 121 DVVVDTLVLVGRWLHLLSPSTTCCCRRHMEYVT 153

[Close]
BLAST of CsaV3_6G025280 vs. NCBI nr
Match: KAA0062691.1 (hypothetical protein E6C27_scaffold47124G00030 [Cucumis melo var. makuwa] >TYK06542.1 hypothetical protein E5676_scaffold84067G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 245.7 bits (626), Expect = 2.5e-61
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 1   MRTSFPSAHSPFTRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPADHSAGILHSRLRLTAAR 120

[Close]
BLAST of CsaV3_6G025280 vs. NCBI nr
Match: YP_010047116.1 (hypothetical protein J6727_mgp35 [Pyrus betulifolia] >QPJ79552.1 hypothetical protein [Pyrus betulifolia])

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 28  MRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 87

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRID+PSS SFPVHSLYISDTQGRTRWE SSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 88  MLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSSPSLCPADHSAGILHSRLRLTAAR 147

[Close]
BLAST of CsaV3_6G025280 vs. NCBI nr
Match: QCE02896.1 (hypothetical protein DEO72_LG8g912 [Vigna unguiculata])

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 1   MRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRID+PSS SFPVHSLYISDTQGRTRWE SSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 61  MLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSSPSLCPADHSAGILHSRLRLTAAR 120

[Close]
BLAST of CsaV3_6G025280 vs. NCBI nr
Match: RDY14270.1 (hypothetical protein CR513_00684, partial [Mucuna pruriens])

HSP 1 Score: 235.7 bits (600), Expect = 2.6e-58
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 292 MRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 351

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRID+PSS SFPVHSLYISDTQGRTRWE SSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 352 MLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSSPSLCPADHSAGILHSRLRLTAAR 411

[Close]
BLAST of CsaV3_6G025280 vs. ExPASy TrEMBL
Match: A0A5A7VAJ4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold84067G00010 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 1.2e-61
Identity = 118/120 (98.33%), Postives = 118/120 (98.33%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 1   MRTSFPSAHSPFTRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPADHSAGILHSRLRLTAAR 120

[Close]
BLAST of CsaV3_6G025280 vs. ExPASy TrEMBL
Match: A0A371IGX6 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00684 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 292 MRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 351

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRID+PSS SFPVHSLYISDTQGRTRWE SSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 352 MLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSSPSLCPADHSAGILHSRLRLTAAR 411

[Close]
BLAST of CsaV3_6G025280 vs. ExPASy TrEMBL
Match: A0A445GXA1 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_041803 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 37  MRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 96

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRID+PSS SFPVHSLYISDTQGRTRWE SSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 97  MLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSSPSLCPADHSAGILHSRLRLTAAR 156

[Close]
BLAST of CsaV3_6G025280 vs. ExPASy TrEMBL
Match: A0A4D6MN26 (Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g912 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 1   MRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRID+PSS SFPVHSLYISDTQGRTRWE SSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 61  MLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSSPSLCPADHSAGILHSRLRLTAAR 120

[Close]
BLAST of CsaV3_6G025280 vs. ExPASy TrEMBL
Match: A0A7T0CRU8 (Uncharacterized protein OS=Pyrus betulifolia OX=436086 GN=ORF211 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58
Identity = 114/120 (95.00%), Postives = 115/120 (95.83%), Query Frame = 0 

Query: 1   MRTSFPSAHSPFIRFSKQRRKGGLQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 60
           MRTSFPSAHSPF RFSKQRRKGG QVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV
Sbjct: 28  MRTSFPSAHSPFTRFSKQRRKGGQQVPRALCPTHLSRSKCSSPVPPNAPISRQRSCECAV 87

Query: 61  MLRMLRHRIDQPSSPSFPVHSLYISDTQGRTRWEESSPSLCPTDHSAGILHSRLRLTAAR 120
           MLRMLRHRID+PSS SFPVHSLYISDTQGRTRWE SSPSLCP DHSAGILHSRLRLTAAR
Sbjct: 88  MLRMLRHRIDRPSSRSFPVHSLYISDTQGRTRWEGSSPSLCPADHSAGILHSRLRLTAAR 147

The following BLAST results are available for this feature:
BLAST of CsaV3_6G025280 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647125.16.2e-84100.00hypothetical protein Csa_021537 [Cucumis sativus] >KAE8647131.1 hypothetical pro... [more]
KAA0062691.12.5e-6198.33hypothetical protein E6C27_scaffold47124G00030 [Cucumis melo var. makuwa] >TYK06... [more]
YP_010047116.12.6e-5895.00hypothetical protein J6727_mgp35 [Pyrus betulifolia] >QPJ79552.1 hypothetical pr... [more]
QCE02896.12.6e-5895.00hypothetical protein DEO72_LG8g912 [Vigna unguiculata][more]
RDY14270.12.6e-5895.00hypothetical protein CR513_00684, partial [Mucuna pruriens][more]
BLAST of CsaV3_6G025280 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G025280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VAJ41.2e-6198.33Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A371IGX61.3e-5895.00Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_00684 P... [more]
A0A445GXA11.3e-5895.00Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_041803 PE=4 SV=1[more]
A0A4D6MN261.3e-5895.00Uncharacterized protein OS=Vigna unguiculata OX=3917 GN=DEO72_LG8g912 PE=4 SV=1[more]
A0A7T0CRU81.3e-5895.00Uncharacterized protein OS=Pyrus betulifolia OX=436086 GN=ORF211 PE=4 SV=1[more]
BLAST of CsaV3_6G025280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G025280.1CsaV3_6G025280.1mRNA