CsaV3_6G024140 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G024140
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2
Location	chr6: 15995136 .. 15995479 (+)
RNA-Seq Expression	CsaV3_6G024140
Synteny	CsaV3_6G024140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCTCCCGCGCATACCCCGGGGTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGTAACCCGCCTGCTGTCTCATTCAACTACATTTGTTCGTTCCTATAATCCATAGCCTAAGATCAGGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGGAGCATAGCATAGGCGGGAAAGGGAGCCCGGACGGTGGAAGAGCCAGGGGAGGCCGGGTCATTTGA

mRNA sequence

ATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCTCCCGCGCATACCCCGGGGTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGGAGCATAGCATAGGCGGGAAAGGGAGCCCGGACGGTGGAAGAGCCAGGGGAGGCCGGGTCATTTGA

Coding sequence (CDS)

ATGAGCGTTGGCGGGTCCTGGAGTGCCTGTCAAGGGCTCCCGCGCATACCCCGGGGTGATCATCACCACCTGCACCTCACATCTCGGCACAGTGGAACGTGCAGCAGCGAGGGGCAACCTGCCCATACAGCCAGCGGGGAGGATGGCACTACTGGCAAAGACCGTCTGGCGAAAACGCCGCAGGCGCGAAGCGTGGTAGGCCTGCGCCGGGGGGAGCATAGCATAGGCGGGAAAGGGAGCCCGGACGGTGGAAGAGCCAGGGGAGGCCGGGTCATTTGA

Protein sequence

MSVGGSWSACQGLPRIPRGDHHHLHLTSRHSGTCSSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGGRVI*

Homology

[Close]

BLAST of CsaV3_6G024140 vs. NCBI nr
Match: KAE8647118.1 (hypothetical protein Csa_021718 [Cucumis sativus])

HSP 1 Score: 191.0 bits (484), Expect = 4.5e-45
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MSVGGSWSACQGLPRIPRGDHHHLHLTSRHSGTCSSEGQPAHTASGEDGTTGKDRLAKTP 60
          MSVGGSWSACQGLPRIPRGDHHHLHLTSRHSGTCSSEGQPAHTASGEDGTTGKDRLAKTP
Sbjct: 1  MSVGGSWSACQGLPRIPRGDHHHLHLTSRHSGTCSSEGQPAHTASGEDGTTGKDRLAKTP 60

Query: 61 QARSVVGLRRGEHSIGGKGSPDGGRARGGRVI 93
          QARSVVGLRRGEHSIGGKGSPDGGRARGGRVI
Sbjct: 61 QARSVVGLRRGEHSIGGKGSPDGGRARGGRVI 92

[Close]

BLAST of CsaV3_6G024140 vs. NCBI nr
Match: KAC9255308.1 (hypothetical protein E3N88_46107 [Mikania micrantha] >KAC9255314.1 hypothetical protein E3N88_46113 [Mikania micrantha] >KAD0468658.1 hypothetical protein E3N88_44232 [Mikania micrantha])

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-18
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 35  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGGRVI 93
           SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG  SIG KGSPDGGRARGGRVI
Sbjct: 160 SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG--SIGRKGSPDGGRARGGRVI 215

[Close]

BLAST of CsaV3_6G024140 vs. NCBI nr
Match: KAD0475168.1 (hypothetical protein E3N88_44205 [Mikania micrantha])

HSP 1 Score: 101.7 bits (252), Expect = 3.6e-18
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 35  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGGRVI 93
           SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG  SIG KGSPDGGRARGGRVI
Sbjct: 686 SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG--SIGRKGSPDGGRARGGRVI 741

[Close]

BLAST of CsaV3_6G024140 vs. NCBI nr
Match: KAD4981916.1 (hypothetical protein E3N88_18587 [Mikania micrantha])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 35  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGGRVI 93
           SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLR+G  SIG KGSPDGGRARGGRVI
Sbjct: 817 SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRQG--SIGRKGSPDGGRARGGRVI 872

[Close]

BLAST of CsaV3_6G024140 vs. NCBI nr
Match: GEY72431.1 (reverse transcriptase domain-containing protein [Tanacetum cinerariifolium])

HSP 1 Score: 90.9 bits (224), Expect = 6.3e-15
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 0


Query: 35  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGGR 91
           SSEGQPAHTASGEDGTTGKDRLAKT QARSVVGLRRG  SIG KGSP+GGRARGG+
Sbjct: 346 SSEGQPAHTASGEDGTTGKDRLAKTAQARSVVGLRRG--SIGRKGSPNGGRARGGQ 399

[Close]

BLAST of CsaV3_6G024140 vs. ExPASy TrEMBL
Match: A0A5N6LCV2 (Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44232 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 35  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGGRVI 93
           SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG  SIG KGSPDGGRARGGRVI
Sbjct: 160 SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG--SIGRKGSPDGGRARGGRVI 215

[Close]

BLAST of CsaV3_6G024140 vs. ExPASy TrEMBL
Match: A0A5N6LCP7 (ATP synthase subunit alpha, mitochondrial OS=Mikania micrantha OX=192012 GN=E3N88_44205 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.7e-18
Identity = 55/58 (94.83%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 35  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGGRVI 93
           SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG  SIG KGSPDGGRARGGRVI
Sbjct: 686 SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG--SIGRKGSPDGGRARGGRVI 741

[Close]

BLAST of CsaV3_6G024140 vs. ExPASy TrEMBL
Match: A0A5N6NKT9 (Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18587 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 5.0e-18
Identity = 54/58 (93.10%), Postives = 55/58 (94.83%), Query Frame = 0


Query: 35  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGGRVI 93
           SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLR+G  SIG KGSPDGGRARGGRVI
Sbjct: 817 SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRQG--SIGRKGSPDGGRARGGRVI 872

[Close]

BLAST of CsaV3_6G024140 vs. ExPASy TrEMBL
Match: A0A699UY25 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (Fragment) OS=Tanacetum cinerariifolium OX=118510 GN=Tci_896813 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 7.0e-12
Identity = 43/54 (79.63%), Postives = 46/54 (85.19%), Query Frame = 0


Query: 36 SEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRGEHSIGGKGSPDGGRARGG 90
          SEGQPAH ASGEDGT GKDRLAKTPQ +SV+GL RG  SI GKGSP+ GRARGG
Sbjct: 31 SEGQPAHIASGEDGTIGKDRLAKTPQTQSVIGLSRG--SIQGKGSPNNGRARGG 82

[Close]

BLAST of CsaV3_6G024140 vs. ExPASy TrEMBL
Match: V9P5B5 (Uncharacterized protein OS=Salvia miltiorrhiza OX=226208 GN=orf103b PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 3.9e-10
Identity = 37/37 (100.00%), Postives = 37/37 (100.00%), Query Frame = 0


Query: 35  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG 72
           SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG
Sbjct: 64  SSEGQPAHTASGEDGTTGKDRLAKTPQARSVVGLRRG 100

The following BLAST results are available for this feature:

BLAST of CsaV3_6G024140 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647118.1	4.5e-45	100.00	hypothetical protein Csa_021718 [Cucumis sativus]	[more]
KAC9255308.1	3.6e-18	94.83	hypothetical protein E3N88_46107 [Mikania micrantha] >KAC9255314.1 hypothetical ...	[more]
KAD0475168.1	3.6e-18	94.83	hypothetical protein E3N88_44205 [Mikania micrantha]	[more]
KAD4981916.1	1.0e-17	93.10	hypothetical protein E3N88_18587 [Mikania micrantha]	[more]
GEY72431.1	6.3e-15	89.29	reverse transcriptase domain-containing protein [Tanacetum cinerariifolium]	[more]

BLAST of CsaV3_6G024140 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G024140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5N6LCV2	1.7e-18	94.83	Uncharacterized protein OS=Mikania micrantha OX=192012 GN=E3N88_44232 PE=3 SV=1	[more]
A0A5N6LCP7	1.7e-18	94.83	ATP synthase subunit alpha, mitochondrial OS=Mikania micrantha OX=192012 GN=E3N8...	[more]
A0A5N6NKT9	5.0e-18	93.10	Reverse transcriptase Ty1/copia-type domain-containing protein OS=Mikania micran...	[more]
A0A699UY25	7.0e-12	79.63	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 (Fragment) OS=Tanacetum ci...	[more]
V9P5B5	3.9e-10	100.00	Uncharacterized protein OS=Salvia miltiorrhiza OX=226208 GN=orf103b PE=4 SV=1	[more]

BLAST of CsaV3_6G024140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..92
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G024140.1	CsaV3_6G024140.1	mRNA