CsaV3_6G022580 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G022580
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	GATA transcription factor 16-like
Location	chr6: 15519074 .. 15520669 (-)
RNA-Seq Expression	CsaV3_6G022580
Synteny	CsaV3_6G022580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAATAAAGAATAGAAGGATTTGAAATTGAAATATAGCGCGTTTTATCTTTAATATTTAATAATCAAATTTGGGAGGGGTTCTTTTTTTTTTTCTTCTTCTTCCAGCGTTATATTTTGGCGGGTACGCTGAGAAAGTCGAGAGAGGGGTATTTTCGTCATTTCATAAACACAGATCGATGACTAGGGTTTCGTTATCCGGTTGTATATTAAGTCGGTTTTTTCTGCCCTAAAGTGGCTGCTAAACCGTGTCGGTTCAATCCTTCTTCTTCATTATCATCATCTTCATCTTCTTCTTCTCTCTTTCTTCGTGCCACTGATCGCTCTCACTCTGTTCTTTTCATATCTCTTTCTCTCTCTGCATGTCGGTTTCTTCTCAGATTTCTATTATCTCCTTTTTCACTGTTTTTGTAGTTCCAGTTCTTCGCATTTTTCGTTTTAGTATTGATTGTTTGAGTGGTTTTGTTCGTCTGATCTTCTGTTCAAACTTCCGTTTACGTCCTTCGAATTCGAGTTTGAGTTTGAGCTCTTCTTCTAGTGCATTTCTCCTTCAGTTTCCTTTGATTTTATGACTCCAATTCGTCTCCACCGCTTTCAATCGTCAACATCCTCTTTCCGCTTCCATCTTCGGTGCTGGTTCGTCTCAGATCTTTGAGATTTCTACTGAAAAATGATGGATCCGATCGAGGAAGTGAGTGATCGCGATTCGCGAGTCTTTATTTGAGTTGATTTCTGTACTGATTTTGAAATTATTTTAGTATTGATTCGATTGTACTGTGCTGGAATATAGGGATCGGAGTTCAAGGATGCTGGAAAGACATCGCCGATGGAGAGTGAGCAGAATAAAAAGACCTGCGCCGATTGTGGAACGACGAAGACTCCTCTCTGGCGTGGAGGTCCGGCTGGCCCTAAGGTGATTTATTCTTCATCCCCATGTCTAACCTCGATCAAATCTTCTGTTTGATTTTCCATTTCTATGGCTCGATTTTAACGATCAGAACTTGGTTTTTTTTTGTGCTCAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGAAGATCGCTACTAGGTTTAAACAGAGGAGGGGAAGTAGAGAGGAAAAACAAGGGTAGTAGTAACAACAGAAACAACAATGGCGGTGGAAATCAAGGAAAAATTGGTGGAGAAAGCTTGAAATGGAGATCGATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAGCAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGAAATGCTAATATAATTAATGGAATAGTTCCATTTTTTCTTTTTTTGGAGCCTTTATGATTTCTTCAGAGTATTTAACCTTTTAACTGTAATGTAGCATTTGAGCATTTCCTTTCTTCAATGGATTGATTCTCTTTTATTTTGTGTTTTGTGTGTGTTTTTTTTCTTCTTTTTTGGATGTTTAAAATTCGTTTTTGGTTTAGCTTTTCTCTTTCACATTTGCAATAATTTAATTTTCCAACTTAATTAATCAATCAAGTAGTCATTTGTAACAAATTAAAGACAAAGTTAGGCTTTGAAG

mRNA sequence

ATGATGGATCCGATCGAGGAAGGATCGGAGTTCAAGGATGCTGGAAAGACATCGCCGATGGAGAGTGAGCAGAATAAAAAGACCTGCGCCGATTGTGGAACGACGAAGACTCCTCTCTGGCGTGGAGGTCCGGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGAAGATCGCTACTAGGTTTAAACAGAGGAGGGGAAGTAGAGAGGAAAAACAAGGGTAGTAGTAACAACAGAAACAACAATGGCGGTGGAAATCAAGGAAAAATTGGTGGAGAAAGCTTGAAATGGAGATCGATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAGCAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA

Coding sequence (CDS)

ATGATGGATCCGATCGAGGAAGGATCGGAGTTCAAGGATGCTGGAAAGACATCGCCGATGGAGAGTGAGCAGAATAAAAAGACCTGCGCCGATTGTGGAACGACGAAGACTCCTCTCTGGCGTGGAGGTCCGGCTGGCCCTAAGTCTCTTTGCAATGCGTGTGGGATCAGAAGTAGGAAGAAGAGAAGATCGCTACTAGGTTTAAACAGAGGAGGGGAAGTAGAGAGGAAAAACAAGGGTAGTAGTAACAACAGAAACAACAATGGCGGTGGAAATCAAGGAAAAATTGGTGGAGAAAGCTTGAAATGGAGATCGATGGCGTTTGGTAGAAAAGAATTAATGCAAAGGAGACAGTTGGGAGAGGAAGAGCAAGCTGCTGTTTTGTTAATGGCTCTTTCTTATGGATCTGTATATGCTTGA

Protein sequence

MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA*

Homology

[Close]

BLAST of CsaV3_6G022580 vs. NCBI nr
Match: XP_004150081.1 (GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein Csa_022928 [Cucumis sativus])

HSP 1 Score: 271.6 bits (693), Expect = 3.9e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 140
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CsaV3_6G022580 vs. NCBI nr
Match: XP_008458384.1 (PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936.1 GATA transcription factor 16-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 269.2 bits (687), Expect = 1.9e-68
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 140
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CsaV3_6G022580 vs. NCBI nr
Match: XP_038875288.1 (GATA transcription factor 16-like [Benincasa hispida])

HSP 1 Score: 249.2 bits (635), Expect = 2.1e-62
Identity = 131/139 (94.24%), Postives = 134/139 (96.40%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGK+SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERK+KGSS NR+NNGGGNQ KIG ESLKWRSMAFGR ELMQRRQLG
Sbjct: 61  KRRSLLGLNRGGEVERKSKGSS-NRSNNGGGNQTKIGRESLKWRSMAFGRNELMQRRQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 140
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 138

[Close]

BLAST of CsaV3_6G022580 vs. NCBI nr
Match: XP_022138518.1 (GATA transcription factor 16-like [Momordica charantia])

HSP 1 Score: 238.8 bits (608), Expect = 2.8e-59
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAG----KTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDAG    K SP ESEQN+KTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQR 120
           RSRKKRRSLLGLNRG EVERKNKGSS NR +NGGGNQ KIGG++LKWR MAFGR+ELMQR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSS-NRTSNGGGNQAKIGGDNLKWRLMAFGREELMQR 120

Query: 121 RQLGEEEQAAVLLMALSYGSVYA 140
           RQLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 RQLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of CsaV3_6G022580 vs. NCBI nr
Match: XP_023548663.1 (GATA transcription factor 16-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 3.1e-58
Identity = 125/143 (87.41%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGK----TSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDA      +SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAENSPRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQR 120
           RSRKKRRSLLGLNRG EVERK+KGSS NRN+NGGGNQ K+GG++LKWRS AFGRK+LMQR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKSKGSS-NRNSNGGGNQAKLGGDNLKWRSTAFGRKDLMQR 120

Query: 121 RQLGEEEQAAVLLMALSYGSVYA 140
           RQLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 RQLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy Swiss-Prot
Match: Q9FJ10 (GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 5.6e-26
Identity = 75/118 (63.56%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 26  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNNR 85
           KKTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K SS   
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLKKSS--- 94

Query: 86  NNNGGGNQGKIGGESLKWRSMAFGRKEL----MQRRQLGEEEQAAVLLMALSYGSVYA 140
             +GGGN  +  GESLK   M  G ++      QR++LGEEEQAAVLLMALSYGSVYA
Sbjct: 95  --SGGGN--RKFGESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy Swiss-Prot
Match: Q8LG10 (GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2)

HSP 1 Score: 113.6 bits (283), Expect = 1.8e-24
Identity = 79/147 (53.74%), Postives = 94/147 (63.95%), Query Frame = 0


Query: 2   MDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKK 61
           +D IEE S       +S       KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKK
Sbjct: 21  VDAIEEHS-----SSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKK 80

Query: 62  RRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQ------ 121
           RR+L+  NR  + ++K    S+NRN           G+SLK R M  GR+ +MQ      
Sbjct: 81  RRTLIS-NRSEDKKKK----SHNRNPK--------FGDSLKQRLMELGREVMMQRSTAEN 140

Query: 122 --RRQLGEEEQAAVLLMALSY-GSVYA 140
             R +LGEEEQAAVLLMALSY  SVYA
Sbjct: 141 QRRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy Swiss-Prot
Match: Q9LIB5 (GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 2.5e-18
Identity = 67/166 (40.36%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 14  AGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGE 73
           +G      S   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E
Sbjct: 29  SGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SE 88

Query: 74  VERKNKGS-----------------------------------SNNRNNNGGGNQG---- 133
            ++KN+ S                                   +N R+++   N+G    
Sbjct: 89  EKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKF 148

Query: 134 -KIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 140
             +G +    +  A  +K L   R+LGEEE+AAVLLMALS  SVYA
Sbjct: 149 LDLGFKVPVMKRSAVEKKRLW--RKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy Swiss-Prot
Match: Q8LC59 (GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2)

HSP 1 Score: 78.2 bits (191), Expect = 8.3e-14
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 21  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNK 80
           E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K
Sbjct: 20  EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH----IIRSHK 79

Query: 81  GSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 140
             ++ + N    + G +                + +RR L EEEQAA+ L+ LS  SV A
Sbjct: 80  SLASKKINLLSSSHGGVA---------------VKKRRSLKEEEQAALCLLLLSCSSVLA 120

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy Swiss-Prot
Match: Q6YW48 (Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CGA1 PE=2 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12
Identity = 31/46 (67.39%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 27  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGG 73
           + C+DC TTKTPLWR GP GPKSLCNACGIR RK RR++     GG
Sbjct: 176 RVCSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKARRAMAAAANGG 221

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy TrEMBL
Match: A0A0A0KG76 (GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 PE=4 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 1.9e-69
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 140
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy TrEMBL
Match: A0A5D3BXI1 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00160 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.4e-69
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 140
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy TrEMBL
Match: A0A1S3C8C2 (GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103497809 PE=4 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.4e-69
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60
           MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK
Sbjct: 1   MMDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRK 60

Query: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLG 120
           KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQR QLG
Sbjct: 61  KRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRTQLG 120

Query: 121 EEEQAAVLLMALSYGSVYA 140
           EEEQAAVLLMALSYGSVYA
Sbjct: 121 EEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy TrEMBL
Match: A0A6J1CD73 (GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666 PE=4 SV=1)

HSP 1 Score: 238.8 bits (608), Expect = 1.4e-59
Identity = 127/143 (88.81%), Postives = 132/143 (92.31%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAG----KTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDPIEEGSEFKDAG    K SP ESEQN+KTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPIEEGSEFKDAGRSPRKASPAESEQNRKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQR 120
           RSRKKRRSLLGLNRG EVERKNKGSS NR +NGGGNQ KIGG++LKWR MAFGR+ELMQR
Sbjct: 61  RSRKKRRSLLGLNRGSEVERKNKGSS-NRTSNGGGNQAKIGGDNLKWRLMAFGREELMQR 120

Query: 121 RQLGEEEQAAVLLMALSYGSVYA 140
           RQLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 RQLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of CsaV3_6G022580 vs. ExPASy TrEMBL
Match: A0A6J1KXU7 (GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111499182 PE=4 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 4.4e-58
Identity = 124/143 (86.71%), Postives = 131/143 (91.61%), Query Frame = 0


Query: 1   MMDPIEEGSEFKDAGK----TSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60
           MMDP+EEGSEFKDA      +SP ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI
Sbjct: 1   MMDPMEEGSEFKDAENSSRMSSPAESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGI 60

Query: 61  RSRKKRRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQR 120
           RSRKKRRSLLGLNRG E ERK+KGSS NRN+NGGGNQ K+GG+SLKWRS AFGRK+LMQR
Sbjct: 61  RSRKKRRSLLGLNRGSEAERKSKGSS-NRNSNGGGNQAKLGGDSLKWRSTAFGRKDLMQR 120

Query: 121 RQLGEEEQAAVLLMALSYGSVYA 140
           RQLGEEEQAAVLLMALSYGSVYA
Sbjct: 121 RQLGEEEQAAVLLMALSYGSVYA 142

[Close]

BLAST of CsaV3_6G022580 vs. TAIR 10
Match: AT5G49300.1 (GATA transcription factor 16 )

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-27
Identity = 75/118 (63.56%), Postives = 84/118 (71.19%), Query Frame = 0


Query: 26  KKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGEVERKNKGSSNNR 85
           KKTCADCGT+KTPLWRGGP GPKSLCNACGIR+RKKRR       G E  +K K SS   
Sbjct: 35  KKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRRG------GTEDNKKLKKSS--- 94

Query: 86  NNNGGGNQGKIGGESLKWRSMAFGRKEL----MQRRQLGEEEQAAVLLMALSYGSVYA 140
             +GGGN  +  GESLK   M  G ++      QR++LGEEEQAAVLLMALSYGSVYA
Sbjct: 95  --SGGGN--RKFGESLKQSLMDLGIRKRSTVEKQRQKLGEEEQAAVLLMALSYGSVYA 139

[Close]

BLAST of CsaV3_6G022580 vs. TAIR 10
Match: AT3G06740.1 (GATA transcription factor 15 )

HSP 1 Score: 113.6 bits (283), Expect = 1.3e-25
Identity = 79/147 (53.74%), Postives = 94/147 (63.95%), Query Frame = 0


Query: 2   MDPIEEGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKK 61
           +D IEE S       +S       KK+CA CGT+KTPLWRGGPAGPKSLCNACGIR+RKK
Sbjct: 21  VDAIEEHS-----SSSSNEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKK 80

Query: 62  RRSLLGLNRGGEVERKNKGSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQ------ 121
           RR+L+  NR  + ++K    S+NRN           G+SLK R M  GR+ +MQ      
Sbjct: 81  RRTLIS-NRSEDKKKK----SHNRNPK--------FGDSLKQRLMELGREVMMQRSTAEN 140

Query: 122 --RRQLGEEEQAAVLLMALSY-GSVYA 140
             R +LGEEEQAAVLLMALSY  SVYA
Sbjct: 141 QRRNKLGEEEQAAVLLMALSYASSVYA 149

[Close]

BLAST of CsaV3_6G022580 vs. TAIR 10
Match: AT3G16870.1 (GATA transcription factor 17 )

HSP 1 Score: 93.2 bits (230), Expect = 1.8e-19
Identity = 67/166 (40.36%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 14  AGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLLGLNRGGE 73
           +G      S   K+TC DCGT +TPLWRGGPAGPKSLCNACGI+SRKKR++ LG+    E
Sbjct: 29  SGSGGGSSSGDTKRTCVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGMR--SE 88

Query: 74  VERKNKGS-----------------------------------SNNRNNNGGGNQG---- 133
            ++KN+ S                                   +N R+++   N+G    
Sbjct: 89  EKKKNRKSNCNNDLNLDHRNAKKYKINIVDDGKIDIDDDPKICNNKRSSSSSSNKGVSKF 148

Query: 134 -KIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 140
             +G +    +  A  +K L   R+LGEEE+AAVLLMALS  SVYA
Sbjct: 149 LDLGFKVPVMKRSAVEKKRLW--RKLGEEERAAVLLMALSCSSVYA 190

[Close]

BLAST of CsaV3_6G022580 vs. TAIR 10
Match: AT4G16141.1 (GATA type zinc finger transcription factor family protein )

HSP 1 Score: 81.6 bits (200), Expect = 5.4e-16
Identity = 68/182 (37.36%), Postives = 92/182 (50.55%), Query Frame = 0


Query: 7   EGSEFKDAGKTSPMESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRSLL 66
           + S+  +   +S       KKTC DCGT++TPLWRGGPAGPKSLCNACGI+SRKKR++ L
Sbjct: 17  DSSDVDNGNCSSSGSGGDTKKTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAAL 76

Query: 67  GLNRGGEVERKNKGSSN----NRNNNGG---------------------GNQGKIGGESL 126
           G+ R  +++ K+K ++N    +RN   G                     G  G +  +  
Sbjct: 77  GI-RQDDIKIKSKSNNNLGLESRNVKTGKGEPVNVKIAKCEPGIVKIAKGEPGNVKNKIK 136

Query: 127 K------------------WRSMAFGRK-ELMQR---------RQLGEEEQAAVLLMALS 136
           +                   R + FG K   M+R         R+LGEEE+AAVLLMALS
Sbjct: 137 RDPENSSSSNNNKKNVKRVGRFLDFGFKVPAMKRSAVEKKRLWRKLGEEERAAVLLMALS 196

[Close]

BLAST of CsaV3_6G022580 vs. TAIR 10
Match: AT5G26930.1 (GATA transcription factor 23 )

HSP 1 Score: 78.2 bits (191), Expect = 5.9e-15
Identity = 52/120 (43.33%), Postives = 71/120 (59.17%), Query Frame = 0


Query: 21  ESEQNKKTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRS-LLGLNRGGEVERKNK 80
           E +   + C++C TTKTP+WRGGP GPKSLCNACGIR RK+RRS LLG++    + R +K
Sbjct: 20  EEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRRSELLGIH----IIRSHK 79

Query: 81  GSSNNRNNNGGGNQGKIGGESLKWRSMAFGRKELMQRRQLGEEEQAAVLLMALSYGSVYA 140
             ++ + N    + G +                + +RR L EEEQAA+ L+ LS  SV A
Sbjct: 80  SLASKKINLLSSSHGGVA---------------VKKRRSLKEEEQAALCLLLLSCSSVLA 120

The following BLAST results are available for this feature:

BLAST of CsaV3_6G022580 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004150081.1	3.9e-69	100.00	GATA transcription factor 16 [Cucumis sativus] >KGN47402.1 hypothetical protein ...	[more]
XP_008458384.1	1.9e-68	99.28	PREDICTED: GATA transcription factor 16-like isoform X1 [Cucumis melo] >TYK02936...	[more]
XP_038875288.1	2.1e-62	94.24	GATA transcription factor 16-like [Benincasa hispida]	[more]
XP_022138518.1	2.8e-59	88.81	GATA transcription factor 16-like [Momordica charantia]	[more]
XP_023548663.1	3.1e-58	87.41	GATA transcription factor 16-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G022580 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FJ10	5.6e-26	63.56	GATA transcription factor 16 OS=Arabidopsis thaliana OX=3702 GN=GATA16 PE=2 SV=1	[more]
Q8LG10	1.8e-24	53.74	GATA transcription factor 15 OS=Arabidopsis thaliana OX=3702 GN=GATA15 PE=2 SV=2	[more]
Q9LIB5	2.5e-18	40.36	GATA transcription factor 17 OS=Arabidopsis thaliana OX=3702 GN=GATA17 PE=2 SV=1	[more]
Q8LC59	8.3e-14	43.33	GATA transcription factor 23 OS=Arabidopsis thaliana OX=3702 GN=GATA23 PE=2 SV=2	[more]
Q6YW48	3.5e-12	67.39	Protein CYTOKININ-RESPONSIVE GATA TRANSCRIPTION FACTOR 1 OS=Oryza sativa subsp. ...	[more]

BLAST of CsaV3_6G022580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KG76	1.9e-69	100.00	GATA-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G312540 P...	[more]
A0A5D3BXI1	9.4e-69	99.28	GATA transcription factor 16-like isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3C8C2	9.4e-69	99.28	GATA transcription factor 16-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349...	[more]
A0A6J1CD73	1.4e-59	88.81	GATA transcription factor 16-like OS=Momordica charantia OX=3673 GN=LOC111009666...	[more]
A0A6J1KXU7	4.4e-58	86.71	GATA transcription factor 16-like OS=Cucurbita maxima OX=3661 GN=LOC111499182 PE...	[more]

BLAST of CsaV3_6G022580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G49300.1	4.0e-27	63.56	GATA transcription factor 16	[more]
AT3G06740.1	1.3e-25	53.74	GATA transcription factor 15	[more]
AT3G16870.1	1.8e-19	40.36	GATA transcription factor 17	[more]
AT4G16141.1	5.4e-16	37.36	GATA type zinc finger transcription factor family protein	[more]
AT5G26930.1	5.9e-15	43.33	GATA transcription factor 23	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000679	Zinc finger, GATA-type	SMART	SM00401	GATA_3	coord: 23..81 e-value: 8.0E-13 score: 58.6
IPR000679	Zinc finger, GATA-type	PFAM	PF00320	GATA	coord: 29..63 e-value: 4.4E-17 score: 61.4
IPR000679	Zinc finger, GATA-type	PROSITE	PS00344	GATA_ZN_FINGER_1	coord: 29..54
IPR000679	Zinc finger, GATA-type	PROSITE	PS50114	GATA_ZN_FINGER_2	coord: 23..59 score: 12.545015
IPR000679	Zinc finger, GATA-type	CDD	cd00202	ZnF_GATA	coord: 28..63 e-value: 1.2405E-13 score: 59.3086
IPR013088	Zinc finger, NHR/GATA-type	GENE3D	3.30.50.10		coord: 23..92 e-value: 7.2E-17 score: 63.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..80
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..100
None	No IPR available	PANTHER	PTHR47172	OS01G0976800 PROTEIN	coord: 1..139
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 25..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G022580.1	CsaV3_6G022580.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding