CsaV3_6G022150 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G022150
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	RING-type E3 ubiquitin transferase
Location	chr6: 15140722 .. 15141345 (-)
RNA-Seq Expression	CsaV3_6G022150
Synteny	CsaV3_6G022150

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

mRNA sequence

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

Coding sequence (CDS)

ATGCCATCGAGTCCGCCTCCGCCATCTCCGGTGCCTGATTACTCTAGCTGGAGTCCATGGTCAATCTCGACCATCGTCGTCGTATGCATCGTCTTCCTACTGTTGAGCAACTATAGACTTTTGAAACAATTGTGCCGTGTCCTTCATGGACTGTTTACCGGTCGACCTACGGTCCAATTTGAGGAAAACCCTAACAATCCTTCACTACAAATCCATGGCCATGGACTGGAGACCTCGATGATTCGTTTGCTACCTATATCGCAGTTCAAAAAGAATGAAGAATCCGAATCAACGACAAGTTTCAATACGGAATGCGCTGTTTGTTTGGGTGAATTCGAAGAAGGGGAATTGATTAAACACTTACCGAATTGTAATCATTCGTTTCATAGTCCTTGTATCGATGCCTGGTTCCGTAATCATTCGAGTTGCCCTCTCTGCAGATTGCAAGTCTTGAGTTTCTCTACTCCTGATTCTTCTTCTTCAGCAATGCTGGAAACGCTTGGAAGAGAAAATGTTCTACGAGAAAGAGTAGCGCATTATCAAACACTTCGTGCTCAAATTCTGCAGCACCCTGAATTCAGAAGAGATGCATCGATTCAAGGAACAGACCAACGAAACCGATGA

Protein sequence

MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR*

Homology

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BLAST of CsaV3_6G022150 vs. NCBI nr
Match: XP_031743630.1 (RING-H2 finger protein ATL52-like [Cucumis sativus] >KGN47355.1 hypothetical protein Csa_023057 [Cucumis sativus])

HSP 1 Score: 424.5 bits (1090), Expect = 5.4e-115
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120
           EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH
Sbjct: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120

Query: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180
           LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY
Sbjct: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180

Query: 181 QTLRAQILQHPEFRRDASIQGTDQRNR 208
           QTLRAQILQHPEFRRDASIQGTDQRNR
Sbjct: 181 QTLRAQILQHPEFRRDASIQGTDQRNR 207

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BLAST of CsaV3_6G022150 vs. NCBI nr
Match: XP_008448367.1 (PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >KAA0061954.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa] >TYK23976.1 RING-H2 finger protein ATL66-like [Cucumis melo var. makuwa])

HSP 1 Score: 388.7 bits (997), Expect = 3.3e-104
Identity = 189/206 (91.75%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MPSSPPPPSPVPDYSSWSPWSISTIV+VC++FLLLSNYRLLKQLCRVLH LF+GRP VQF
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120
           EENPNNPSLQIH HGLETSMIRLLPISQFKK EESESTTSFNTECAVCLGEFEEGELIK+
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180
           LPNCNHSFHS CIDAWFR+HSSCPLCRLQV SFSTPD SSSAMLETLGREN+LRERVAHY
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWSFSTPD-SSSAMLETLGRENILRERVAHY 180

Query: 181 QTLRAQILQHPEFRRDASIQGTDQRN 207
           QTLRAQILQHPEFRRD SIQG+DQR+
Sbjct: 181 QTLRAQILQHPEFRRDESIQGSDQRD 205

[Close]

BLAST of CsaV3_6G022150 vs. NCBI nr
Match: KAG6570731.1 (RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010575.1 RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 335.9 bits (860), Expect = 2.5e-88
Identity = 170/214 (79.44%), Postives = 186/214 (86.92%), Query Frame = 0


Query: 1   MPSS---PPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPT 60
           MPSS   PPPPSPVPDYSSWSPWSIS I +VCIV LLLSNYR+LK+ CRVLHGLF GR  
Sbjct: 1   MPSSPPPPPPPSPVPDYSSWSPWSISIIAIVCIVVLLLSNYRILKRWCRVLHGLFCGRFV 60

Query: 61  VQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGEL 120
           VQF+ENPN+PS ++H HGLE S IRLLPISQFKKNEE+EST S NTECAVCLGEFEEGEL
Sbjct: 61  VQFDENPNDPSPEVHVHGLEASTIRLLPISQFKKNEEAESTASINTECAVCLGEFEEGEL 120

Query: 121 IKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS----TPDSSSSAMLETLGRENVL 180
           IK+LPNCNHSFHS CIDAW RNHSSCPLCRL V + S    TPD SSSAMLETLGRE+V 
Sbjct: 121 IKNLPNCNHSFHSSCIDAWLRNHSSCPLCRLHVSNLSIDCPTPD-SSSAMLETLGREDVE 180

Query: 181 RERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR 208
           RERV++YQTLRAQILQ+PE RRDAS+QG+DQRNR
Sbjct: 181 RERVSYYQTLRAQILQNPELRRDASVQGSDQRNR 213

[Close]

BLAST of CsaV3_6G022150 vs. NCBI nr
Match: XP_023512261.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 330.1 bits (845), Expect = 1.4e-86
Identity = 167/214 (78.04%), Postives = 183/214 (85.51%), Query Frame = 0


Query: 1   MPSS---PPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPT 60
           MPSS   PPPPSPVPDYSSWSPWSIS I +VCIV LLLSNYR+LK+ CRV HGLF GR  
Sbjct: 1   MPSSPPPPPPPSPVPDYSSWSPWSISIIAIVCIVVLLLSNYRILKRWCRVFHGLFCGRSV 60

Query: 61  VQFEENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGEL 120
           VQF+ENPN+PS Q+H HGLE S IRLLPISQFKKNEE+EST S NTECAVCLGEFEEGEL
Sbjct: 61  VQFDENPNDPSPQVHVHGLEASTIRLLPISQFKKNEEAESTASINTECAVCLGEFEEGEL 120

Query: 121 IKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS----TPDSSSSAMLETLGRENVL 180
           IK+LPNCNHSFHS CIDAW RNHSSCPLCRL V + S    TPD SSSAMLETL RE+V 
Sbjct: 121 IKNLPNCNHSFHSSCIDAWLRNHSSCPLCRLHVSNLSIDCPTPD-SSSAMLETLSREDVD 180

Query: 181 RERVAHYQTLRAQILQHPEFRRDASIQGTDQRNR 208
            ERV++YQTLRAQILQ+P+ RRDAS+QG+DQRNR
Sbjct: 181 GERVSYYQTLRAQILQNPDLRRDASVQGSDQRNR 213

[Close]

BLAST of CsaV3_6G022150 vs. NCBI nr
Match: XP_031247518.1 (RING-H2 finger protein ATL16-like [Pistacia vera])

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-42
Identity = 97/197 (49.24%), Postives = 121/197 (61.42%), Query Frame = 0


Query: 3   SSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQ--- 62
           SS P P+P+    SW+P  +S + + C +FLL S Y  LK+LC         R   Q   
Sbjct: 2   SSSPSPAPIYKPPSWNPLVVSLVALTCTIFLLFSYYNYLKKLCCCAFNRGNSRNPDQRQL 61

Query: 63  -FEENPNNPSLQIHGHGLETSMIRLLPISQFKKN---EESESTTSFNTECAVCLGEFEEG 122
             E N ++PSLQ + HGLE+S+I  LPI+QFKKN   EE E     N+EC VCLGEFEEG
Sbjct: 62  LNEANFDDPSLQFNSHGLESSIIHSLPITQFKKNINKEEEEELQPRNSECGVCLGEFEEG 121

Query: 123 ELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAM---LETLGRENV 182
           E +KHLPNC+H+FH PCID WF +HS+CPLCR Q    + P   S +M   LE L RE+ 
Sbjct: 122 EWLKHLPNCSHAFHIPCIDTWFHSHSNCPLCRSQAFDLTIPHECSVSMYTLLENLRREDF 181

Query: 183 LRERVAHYQTLRAQILQ 190
             ER  HYQ LR  +LQ
Sbjct: 182 FHERATHYQILRTAVLQ 198

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BLAST of CsaV3_6G022150 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-20
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTV 64
           PPPPS   D       SS+SP  I+ I ++    +L+S Y L+ + C   H   +   T+
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCH-RHHQTSSSETL 95

Query: 65  QFEEN-----PNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFE 124
               N      +   +  +G GL  SMI+ + + ++K  +         ++C+VCL EFE
Sbjct: 96  NLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD----GSDCSVCLSEFE 155

Query: 125 EGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSS 160
           E E ++ LP CNH+FH PCID W ++HS+CPLCR  V   + P +S
Sbjct: 156 ENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTAS 196

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 4.9e-18
Identity = 56/167 (33.53%), Postives = 91/167 (54.49%), Query Frame = 0


Query: 5   PPPPSPV-----PDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGL-FTGRPTV 64
           PPPP P+        +S+   +++ I ++   FLL+S Y  + + C   H +   GR ++
Sbjct: 17  PPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSL 76

Query: 65  -QFEENPNNP----SLQIHGHGLETSMIRLLPISQFKK----------NEESESTTSFNT 124
            +   N  +P    S ++   GL+ S+IR +PI +FKK           E  E     + 
Sbjct: 77  SRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQ 136

Query: 125 ECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV 151
           EC+VCL EF++ E ++ +PNC+H FH  CID W +N+++CPLCR +V
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 91.7 bits (226), Expect = 1.1e-17
Identity = 59/175 (33.71%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIVVVCIVFLLLSNYRLLKQLC-RVLHGL------ 64
           PPPPS   D       S +SP  I+ I ++   F+L+S Y L+ + C R  H        
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 65  --------FTGRPTVQFEEN-PNNPSLQI---HGHGLETSMIRLLPISQFKKNEESESTT 124
                   +T + T     N   NP+  I    G GL+ S+I+ + + +++K +      
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVE-- 157

Query: 125 SFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS 155
             +++C+VCL EF+E E ++ LP CNH+FH PCID W ++HS+CPLCR  +++ S
Sbjct: 158 --SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS 208

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy Swiss-Prot
Match: Q9LX93 (E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.4e-17
Identity = 69/199 (34.67%), Postives = 90/199 (45.23%), Query Frame = 0


Query: 2   PSSPPPPSPVPDYSSWSPWSISTI-VVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 61
           P  PPPP P  + S   P SI  +  ++  +FL+   Y  + Q  R+     T   T Q 
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQ 85

Query: 62  EENPNNPS---------LQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGE 121
           E+                QI   GL  S I  + +  FKK E         TEC+VCL E
Sbjct: 86  EDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIID----GTECSVCLNE 145

Query: 122 FEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS-----------TPDSSS 180
           FEE E ++ LP C+H+FH  CID W  +H +CPLCR  VL  +            PDS S
Sbjct: 146 FEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSES 205

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy Swiss-Prot
Match: Q7XLY8 (E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2)

HSP 1 Score: 90.1 bits (222), Expect = 3.1e-17
Identity = 60/193 (31.09%), Postives = 93/193 (48.19%), Query Frame = 0


Query: 5   PPPPSPVPDYSS-------WSPWSISTIVVVCIVFLLLSNYRLLKQLCRV---LHGLFTG 64
           PPPP  V   S+       +SP  I+ I V+   FLL+S Y  + + C     L G   G
Sbjct: 36  PPPPFDVAGTSADDSSGPVFSPLVIAIIGVLASAFLLVSYYTFISKYCGTVSSLRGRVFG 95

Query: 65  RPTVQFEENPNNPSLQIHGH---------------GLETSMIRLLPISQFKKNEESESTT 124
             +          S   HGH               GL+ ++I  + + ++++ +    T 
Sbjct: 96  SSSGGAAYGGGAGSGGRHGHGQSRSHESWNVSPPSGLDETLINKITVCKYRRGDGFVHT- 155

Query: 125 SFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV----LSFST 169
              T+C+VCLGEF +GE ++ LP C+H+FH  CID W ++HS+CPLCR  +    +  ++
Sbjct: 156 ---TDCSVCLGEFSDGESLRLLPRCSHAFHQQCIDTWLKSHSNCPLCRANITFVTVGLAS 215

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy TrEMBL
Match: A0A0A0KCA5 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G303210 PE=3 SV=1)

HSP 1 Score: 424.5 bits (1090), Expect = 2.6e-115
Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120
           EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH
Sbjct: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120

Query: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180
           LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY
Sbjct: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180

Query: 181 QTLRAQILQHPEFRRDASIQGTDQRNR 208
           QTLRAQILQHPEFRRDASIQGTDQRNR
Sbjct: 181 QTLRAQILQHPEFRRDASIQGTDQRNR 207

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy TrEMBL
Match: A0A5A7V3S2 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold250G00390 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.6e-104
Identity = 189/206 (91.75%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MPSSPPPPSPVPDYSSWSPWSISTIV+VC++FLLLSNYRLLKQLCRVLH LF+GRP VQF
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120
           EENPNNPSLQIH HGLETSMIRLLPISQFKK EESESTTSFNTECAVCLGEFEEGELIK+
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180
           LPNCNHSFHS CIDAWFR+HSSCPLCRLQV SFSTPD SSSAMLETLGREN+LRERVAHY
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWSFSTPD-SSSAMLETLGRENILRERVAHY 180

Query: 181 QTLRAQILQHPEFRRDASIQGTDQRN 207
           QTLRAQILQHPEFRRD SIQG+DQR+
Sbjct: 181 QTLRAQILQHPEFRRDESIQGSDQRD 205

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy TrEMBL
Match: A0A1S3BIX6 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103490579 PE=3 SV=1)

HSP 1 Score: 388.7 bits (997), Expect = 1.6e-104
Identity = 189/206 (91.75%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MPSSPPPPSPVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 60
           MPSSPPPPSPVPDYSSWSPWSISTIV+VC++FLLLSNYRLLKQLCRVLH LF+GRP VQF
Sbjct: 1   MPSSPPPPSPVPDYSSWSPWSISTIVIVCVIFLLLSNYRLLKQLCRVLHELFSGRPAVQF 60

Query: 61  EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKH 120
           EENPNNPSLQIH HGLETSMIRLLPISQFKK EESESTTSFNTECAVCLGEFEEGELIK+
Sbjct: 61  EENPNNPSLQIHAHGLETSMIRLLPISQFKKKEESESTTSFNTECAVCLGEFEEGELIKN 120

Query: 121 LPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSSSSAMLETLGRENVLRERVAHY 180
           LPNCNHSFHS CIDAWFR+HSSCPLCRLQV SFSTPD SSSAMLETLGREN+LRERVAHY
Sbjct: 121 LPNCNHSFHSSCIDAWFRDHSSCPLCRLQVWSFSTPD-SSSAMLETLGRENILRERVAHY 180

Query: 181 QTLRAQILQHPEFRRDASIQGTDQRN 207
           QTLRAQILQHPEFRRD SIQG+DQR+
Sbjct: 181 QTLRAQILQHPEFRRDESIQGSDQRD 205

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy TrEMBL
Match: A0A6A6KKG1 (RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_013318 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.1e-40
Identity = 100/198 (50.51%), Postives = 126/198 (63.64%), Query Frame = 0


Query: 1   MPSSPPPPS--PVPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTV 60
           MP SP P +   + +   W+P+ I  +V VC   ++ S YR+LK+LC  L+ L   R   
Sbjct: 1   MPLSPTPAAQHQLENSPEWNPYVIGPVVAVCTFIVMFSYYRILKRLCCSLNTLTFSRNRF 60

Query: 61  QF----EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEE 120
           Q     E +  + SLQ   HGLE++++  LPISQFKK +E ES TS N+ECAVCLGEFEE
Sbjct: 61  QMRRIGENSLGDSSLQYFSHGLESAIMCSLPISQFKKEKEEESRTS-NSECAVCLGEFEE 120

Query: 121 GELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDS-SSSAMLETLGRENVL 180
           GE +KHLP C H FH  CID WF+ HS+CPLCR QV   S   S S S +LETL RE+ L
Sbjct: 121 GEWLKHLPICAHVFHVACIDTWFQTHSNCPLCRSQVYDLSHEYSISVSILLETLRREDFL 180

Query: 181 RERVAHYQTLRAQILQHP 192
            ER  HYQ LR +IL +P
Sbjct: 181 HERAKHYQILRPEILGNP 197

[Close]

BLAST of CsaV3_6G022150 vs. ExPASy TrEMBL
Match: A0A2C9W1B6 (RING-type E3 ubiquitin transferase OS=Manihot esculenta OX=3983 GN=MANES_04G030200 PE=3 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 4.7e-40
Identity = 95/197 (48.22%), Postives = 125/197 (63.45%), Query Frame = 0


Query: 1   MPSSPPPPSP--VPDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTV 60
           MP SP P +P  + +YS W+ + I  ++ VC   +L S YR+L++LC  L+     R   
Sbjct: 1   MPPSPTPEAPLRLENYSQWNAYVIGPVIAVCSSVVLFSYYRMLRRLCCTLNTQTLPRNRA 60

Query: 61  QF----EENPNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFEE 120
           Q     + N  + SLQ + HGLE++++R LPISQFKK EESE++   N ECAVCLGEFEE
Sbjct: 61  QMSRINQNNLEDSSLQNYSHGLESNIMRSLPISQFKKEEESEAS---NRECAVCLGEFEE 120

Query: 121 GELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDS-SSSAMLETLGRENVL 180
           GE +KHLPNC H FH  CID WF+ HS+CPLCR  V       S S   +L TL RE+  
Sbjct: 121 GEWLKHLPNCAHVFHVACIDTWFQTHSNCPLCRSHVYDLCHEYSISMDTLLHTLRREDFF 180

Query: 181 RERVAHYQTLRAQILQH 191
            ER  HYQ LR++IL++
Sbjct: 181 NERAEHYQNLRSEILRN 194

[Close]

BLAST of CsaV3_6G022150 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 9.7e-22
Identity = 58/166 (34.94%), Postives = 88/166 (53.01%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTV 64
           PPPPS   D       SS+SP  I+ I ++    +L+S Y L+ + C   H   +   T+
Sbjct: 36  PPPPSFFLDDDSSSSSSSFSPLLIALIGILTSALILVSYYTLISKYCH-RHHQTSSSETL 95

Query: 65  QFEEN-----PNNPSLQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGEFE 124
               N      +   +  +G GL  SMI+ + + ++K  +         ++C+VCL EFE
Sbjct: 96  NLNHNGEGFFSSTQRISTNGDGLNESMIKSITVYKYKSGDGFVD----GSDCSVCLSEFE 155

Query: 125 EGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFSTPDSS 160
           E E ++ LP CNH+FH PCID W ++HS+CPLCR  V   + P +S
Sbjct: 156 ENESLRLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVTGVNNPTAS 196

[Close]

BLAST of CsaV3_6G022150 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 92.8 bits (229), Expect = 3.4e-19
Identity = 56/167 (33.53%), Postives = 91/167 (54.49%), Query Frame = 0


Query: 5   PPPPSPV-----PDYSSWSPWSISTIVVVCIVFLLLSNYRLLKQLCRVLHGL-FTGRPTV 64
           PPPP P+        +S+   +++ I ++   FLL+S Y  + + C   H +   GR ++
Sbjct: 17  PPPPPPIFHRASSTGTSFPILAVAVIGILATAFLLVSYYVFVIKCCLNWHRIDILGRFSL 76

Query: 65  -QFEENPNNP----SLQIHGHGLETSMIRLLPISQFKK----------NEESESTTSFNT 124
            +   N  +P    S ++   GL+ S+IR +PI +FKK           E  E     + 
Sbjct: 77  SRRRRNDQDPLMVYSPELRSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEEKRSQ 136

Query: 125 ECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQV 151
           EC+VCL EF++ E ++ +PNC+H FH  CID W +N+++CPLCR +V
Sbjct: 137 ECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRV 183

[Close]

BLAST of CsaV3_6G022150 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-19
Identity = 59/175 (33.71%), Postives = 93/175 (53.14%), Query Frame = 0


Query: 5   PPPPSPVPD------YSSWSPWSISTIVVVCIVFLLLSNYRLLKQLC-RVLHGL------ 64
           PPPPS   D       S +SP  I+ I ++   F+L+S Y L+ + C R  H        
Sbjct: 38  PPPPSFYLDDEDDSSSSDFSPLLIALIGILASAFILVSYYTLISKYCHRRRHNSSSTSAA 97

Query: 65  --------FTGRPTVQFEEN-PNNPSLQI---HGHGLETSMIRLLPISQFKKNEESESTT 124
                   +T + T     N   NP+  I    G GL+ S+I+ + + +++K +      
Sbjct: 98  AINRISSDYTWQGTNNNNNNGATNPNQTIGGGGGDGLDESLIKSITVYKYRKMDGFVE-- 157

Query: 125 SFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS 155
             +++C+VCL EF+E E ++ LP CNH+FH PCID W ++HS+CPLCR  +++ S
Sbjct: 158 --SSDCSVCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCRAFIVTSS 208

[Close]

BLAST of CsaV3_6G022150 vs. TAIR 10
Match: AT3G16720.1 (TOXICOS EN LEVADURA 2 )

HSP 1 Score: 91.7 bits (226), Expect = 7.7e-19
Identity = 56/141 (39.72%), Postives = 80/141 (56.74%), Query Frame = 0


Query: 26  VVVCIVFL-LLSNYRLLKQLCRVLHGLFTGR--PTVQFEENPNNPSLQ-IHGHGLETSMI 85
           VV+ +VFL L + + LL+   R L      R    V F  +P+  +   +   GL+ ++I
Sbjct: 41  VVILMVFLHLYARWYLLRARRRHLRRRSRNRRATMVFFTADPSTAATSVVASRGLDPNVI 100

Query: 86  RLLPISQFKKNEESESTTSFNTECAVCLGEFEEGELIKHLPNCNHSFHSPCIDAWFRNHS 145
           + LP+  F     S+ T     ECAVCL EFEE E  + LPNC H+FH  CID WF +HS
Sbjct: 101 KSLPVFTF-----SDETHKDPIECAVCLSEFEESETGRVLPNCQHTFHVDCIDMWFHSHS 160

Query: 146 SCPLCRLQVLSFSTPDSSSSA 163
           +CPLCR  V S +  +S+++A
Sbjct: 161 TCPLCRSLVESLAGIESTAAA 176

[Close]

BLAST of CsaV3_6G022150 vs. TAIR 10
Match: AT5G10380.1 (RING/U-box superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 1.7e-18
Identity = 69/199 (34.67%), Postives = 90/199 (45.23%), Query Frame = 0


Query: 2   PSSPPPPSPVPDYSSWSPWSISTI-VVVCIVFLLLSNYRLLKQLCRVLHGLFTGRPTVQF 61
           P  PPPP P  + S   P SI  +  ++  +FL+   Y  + Q  R+     T   T Q 
Sbjct: 26  PPPPPPPPPPRELSLLLPTSICVVGSIILFLFLVFFLYLHITQQRRISAASVTPGDTNQQ 85

Query: 62  EENPNNPS---------LQIHGHGLETSMIRLLPISQFKKNEESESTTSFNTECAVCLGE 121
           E+                QI   GL  S I  + +  FKK E         TEC+VCL E
Sbjct: 86  EDEDETEERDFSDFHHVWQIPTVGLHRSAINSITVVGFKKGEGIID----GTECSVCLNE 145

Query: 122 FEEGELIKHLPNCNHSFHSPCIDAWFRNHSSCPLCRLQVLSFS-----------TPDSSS 180
           FEE E ++ LP C+H+FH  CID W  +H +CPLCR  VL  +            PDS S
Sbjct: 146 FEEDESLRLLPKCSHAFHLNCIDTWLLSHKNCPLCRAPVLLITEPPHQETETNHQPDSES 205

The following BLAST results are available for this feature:

BLAST of CsaV3_6G022150 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031743630.1	5.4e-115	100.00	RING-H2 finger protein ATL52-like [Cucumis sativus] >KGN47355.1 hypothetical pro...	[more]
XP_008448367.1	3.3e-104	91.75	PREDICTED: RING-H2 finger protein ATL66-like [Cucumis melo] >KAA0061954.1 RING-H...	[more]
KAG6570731.1	2.5e-88	79.44	RING-H2 finger protein ATL16, partial [Cucurbita argyrosperma subsp. sororia] >K...	[more]
XP_023512261.1	1.4e-86	78.04	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_031247518.1	2.1e-42	49.24	RING-H2 finger protein ATL16-like [Pistacia vera]	[more]

BLAST of CsaV3_6G022150 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	1.4e-20	34.94	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9LSW9	4.9e-18	33.53	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]
Q9SRQ8	1.1e-17	33.71	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q9LX93	2.4e-17	34.67	E3 ubiquitin-protein ligase RING1 OS=Arabidopsis thaliana OX=3702 GN=ATL55 PE=1 ...	[more]
Q7XLY8	3.1e-17	31.09	E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=3994...	[more]

BLAST of CsaV3_6G022150 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCA5	2.6e-115	100.00	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_6G303210 PE...	[more]
A0A5A7V3S2	1.6e-104	91.75	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3BIX6	1.6e-104	91.75	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103490579 PE=3 ...	[more]
A0A6A6KKG1	2.1e-40	50.51	RING-type E3 ubiquitin transferase OS=Hevea brasiliensis OX=3981 GN=GH714_013318...	[more]
A0A2C9W1B6	4.7e-40	48.22	RING-type E3 ubiquitin transferase OS=Manihot esculenta OX=3983 GN=MANES_04G0302...	[more]

BLAST of CsaV3_6G022150 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	9.7e-22	34.94	RING/U-box superfamily protein	[more]
AT5G43420.1	3.4e-19	33.53	RING/U-box superfamily protein	[more]
AT3G03550.1	7.7e-19	33.71	RING/U-box superfamily protein	[more]
AT3G16720.1	7.7e-19	39.72	TOXICOS EN LEVADURA 2	[more]
AT5G10380.1	1.7e-18	34.67	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 105..146 e-value: 2.6E-6 score: 37.0
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 104..147 e-value: 1.0E-12 score: 48.2
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 105..147 score: 12.430266
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 65..151 e-value: 4.7E-21 score: 76.2
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 14..159
None	No IPR available	PANTHER	PTHR45676:SF107	RING/U-BOX SUPERFAMILY PROTEIN	coord: 14..159
None	No IPR available	CDD	cd16454	RING-H2_PA-TM-RING	coord: 104..147 e-value: 1.25679E-16 score: 68.4825
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 104..152

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G022150.1	CsaV3_6G022150.1	mRNA