CsaV3_6G021860 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G021860
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 14849262 .. 14849607 (+)
RNA-Seq ExpressionCsaV3_6G021860
SyntenyCsaV3_6G021860
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGTCCACTGCTGCTGCAACTTGTTGGGTTTGTACATATAGACGATGCAACTTCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGGTTTGTACATGATAGACGATGCAACTCCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGGTTTGTACATGATAGACGATGCAACTCCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGGTTTGTACATGATAGACGATGCAACTCCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGGTTTGTACATGATAGACAATGCAACTCTATCATGGCGCCCATTGCTGCTGTGACTTCTTGGGTTTGTACATGA

mRNA sequence

ATGGCGTCCACTGCTGCTGCAACTTGTTGGGTTTGTACATATAGACGATGCAACTTCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGACGATGCAACTCCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGGTTTGTACATGATAGACGATGCAACTCCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGGTTTGTACATGATAGACAATGCAACTCTATCATGGCGCCCATTGCTGCTGTGACTTCTTGGGTTTGTACATGA

Coding sequence (CDS)

ATGGCGTCCACTGCTGCTGCAACTTGTTGGGTTTGTACATATAGACGATGCAACTTCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGACGATGCAACTCCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGGTTTGTACATGATAGACGATGCAACTCCATCATGGCGTCTACTGCTGCTGCGACTTCTTGGGTTTGTACATGATAGACAATGCAACTCTATCATGGCGCCCATTGCTGCTGTGACTTCTTGGGTTTGTACATGA

Protein sequence

MASTAAATCWVCTYRRCNFIMASTAAATSWTMQLHHGVYCCCDFLGLYMIDDATPSWRLLLLRLLGFVHDRQCNSIMAPIAAVTSWVCT*
Homology
[Close]
BLAST of CsaV3_6G021860 vs. NCBI nr
Match: KAE8647061.1 (hypothetical protein Csa_023034 [Cucumis sativus])

HSP 1 Score: 192.2 bits (487), Expect = 1.9e-45
Identity = 89/89 (100.00%), Postives = 89/89 (100.00%), Query Frame = 0 

Query: 1  MASTAAATCWVCTYRRCNFIMASTAAATSWTMQLHHGVYCCCDFLGLYMIDDATPSWRLL 60
          MASTAAATCWVCTYRRCNFIMASTAAATSWTMQLHHGVYCCCDFLGLYMIDDATPSWRLL
Sbjct: 1  MASTAAATCWVCTYRRCNFIMASTAAATSWTMQLHHGVYCCCDFLGLYMIDDATPSWRLL 60

Query: 61 LLRLLGFVHDRQCNSIMAPIAAVTSWVCT 90
          LLRLLGFVHDRQCNSIMAPIAAVTSWVCT
Sbjct: 61 LLRLLGFVHDRQCNSIMAPIAAVTSWVCT 89

[Close]
BLAST of CsaV3_6G021860 vs. NCBI nr
Match: KAE8647201.1 (hypothetical protein Csa_018949, partial [Cucumis sativus])

HSP 1 Score: 72.4 bits (176), Expect = 2.2e-09
Identity = 35/45 (77.78%), Postives = 37/45 (82.22%), Query Frame = 0 

Query: 44 FLGLYMIDDATPSWRLLLLR--LLGFVHDRQCNSIMAPIAAVTSW 87
          F+GLYMIDDAT SWR L LR  LLGFVHDR+CNSIMAP AA T W
Sbjct: 8  FMGLYMIDDATLSWRPLFLRLLLLGFVHDRRCNSIMAPTAAATYW 52

The following BLAST results are available for this feature:
BLAST of CsaV3_6G021860 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8647061.11.9e-45100.00hypothetical protein Csa_023034 [Cucumis sativus][more]
KAE8647201.12.2e-0977.78hypothetical protein Csa_018949, partial [Cucumis sativus][more]
BLAST of CsaV3_6G021860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G021860 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G021860 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G021860.1CsaV3_6G021860.1mRNA