CsaV3_6G021420 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G021420
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	nipped-B-like protein B isoform X3
Location	chr6: 14483651 .. 14483922 (-)
RNA-Seq Expression	CsaV3_6G021420
Synteny	CsaV3_6G021420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAACAACTATGTGAAAGAGACCAGGCTATTCGCAAACTGGAAAGGAAAATAGAAGATATAGATAGGGAATTGCAATCAATTAAATTAGACAACGAAGCGGTCAGTTGTTTTTTCCTCATGCTTGATTTGCTTGCGTAAGAATGTTTTGATGAAATGGTTTGTTTTTTTCTTCACTAACCCTTTTATTCTATAATTTCTTCACATGCTTGGGCAAAGAATGATCTTCTGCGGGAACAAGAAAAAGAAATAGCAACTTACCGGTTATATATGAG

mRNA sequence

GAACAACTATGTGAAAGAGACCAGGCTATTCGCAAACTGGAAAGGAAAATAGAAGATATAGATAGGGAATTGCAATCAATTAAATTAGACAACGAAGCGAATGATCTTCTGCGGGAACAAGAAAAAGAAATAGCAACTTACCGGTTATATATGAG

Coding sequence (CDS)

GAACAACTATGTGAAAGAGACCAGGCTATTCGCAAACTGGAAAGGAAAATAGAAGATATAGATAGGGAATTGCAATCAATTAAATTAGACAACGAAGCGAATGATCTTCTGCGGGAACAAGAAAAAGAAATAGCAACTTACCGGTTATATATGAG

Protein sequence

EQLCERDQAIRKLERKIEDIDRELQSIKLDNEANDLLREQEKEIATYRLYMX

Homology

[Close]

BLAST of CsaV3_6G021420 vs. NCBI nr
Match: KAE8647045.1 (hypothetical protein Csa_023015, partial [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 4.9e-17
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  EQLCERDQAIRKLERKIEDIDRELQSIKLDNEANDLLREQEKEIATYRLYM 52
          EQLCERDQAIRKLERKIEDIDRELQSIKLDNEANDLLREQEKEIATYRLYM
Sbjct: 1  EQLCERDQAIRKLERKIEDIDRELQSIKLDNEANDLLREQEKEIATYRLYM 51

[Close]

BLAST of CsaV3_6G021420 vs. NCBI nr
Match: KAG7016797.1 (hypothetical protein SDJN02_21908 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 78.2 bits (191), Expect = 2.4e-11
Identity = 44/54 (81.48%), Postives = 48/54 (88.89%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYRLY 51
           EQLCERDQAI +LERKIED DRELQSIKLDNEA    +DLLREQ+KEIATYRL+
Sbjct: 166 EQLCERDQAIHELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYRLH 219

[Close]

BLAST of CsaV3_6G021420 vs. NCBI nr
Match: XP_008437668.1 (PREDICTED: uncharacterized protein LOC103483009 isoform X3 [Cucumis melo] >XP_016898805.1 PREDICTED: uncharacterized protein LOC103483009 isoform X4 [Cucumis melo] >TYK05911.1 uncharacterized protein E5676_scaffold376G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQLCERDQAIR+LERKIED DRELQSIKLDNEA    +DLLREQ+KEIATYR
Sbjct: 136 EQLCERDQAIRELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYR 187

[Close]

BLAST of CsaV3_6G021420 vs. NCBI nr
Match: XP_016898803.1 (PREDICTED: uncharacterized protein LOC103483009 isoform X1 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQLCERDQAIR+LERKIED DRELQSIKLDNEA    +DLLREQ+KEIATYR
Sbjct: 136 EQLCERDQAIRELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYR 187

[Close]

BLAST of CsaV3_6G021420 vs. NCBI nr
Match: XP_011654569.1 (uncharacterized protein LOC101218478 isoform X1 [Cucumis sativus] >KAE8647792.1 hypothetical protein Csa_000261 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 3.1e-11
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQLCERDQAIR+LERKIED DRELQSIKLDNEA    +DLLREQ+KEIATYR
Sbjct: 136 EQLCERDQAIRELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYR 187

[Close]

BLAST of CsaV3_6G021420 vs. ExPASy TrEMBL
Match: A0A0A0KEM5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G284710 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.4e-17
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 1  EQLCERDQAIRKLERKIEDIDRELQSIKLDNEANDLLREQEKEIATYRLYM 52
          EQLCERDQAIRKLERKIEDIDRELQSIKLDNEANDLLREQEKEIATYRLYM
Sbjct: 5  EQLCERDQAIRKLERKIEDIDRELQSIKLDNEANDLLREQEKEIATYRLYM 55

[Close]

BLAST of CsaV3_6G021420 vs. ExPASy TrEMBL
Match: A0A1S4DSX0 (uncharacterized protein LOC103483009 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103483009 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQLCERDQAIR+LERKIED DRELQSIKLDNEA    +DLLREQ+KEIATYR
Sbjct: 136 EQLCERDQAIRELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYR 187

[Close]

BLAST of CsaV3_6G021420 vs. ExPASy TrEMBL
Match: A0A5D3C1U0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G00010 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQLCERDQAIR+LERKIED DRELQSIKLDNEA    +DLLREQ+KEIATYR
Sbjct: 136 EQLCERDQAIRELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYR 187

[Close]

BLAST of CsaV3_6G021420 vs. ExPASy TrEMBL
Match: A0A0A0KLR3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138460 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQLCERDQAIR+LERKIED DRELQSIKLDNEA    +DLLREQ+KEIATYR
Sbjct: 134 EQLCERDQAIRELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYR 185

[Close]

BLAST of CsaV3_6G021420 vs. ExPASy TrEMBL
Match: A0A1S4DS30 (uncharacterized protein LOC103483009 isoform X6 OS=Cucumis melo OX=3656 GN=LOC103483009 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.5e-11
Identity = 44/52 (84.62%), Postives = 47/52 (90.38%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQLCERDQAIR+LERKIED DRELQSIKLDNEA    +DLLREQ+KEIATYR
Sbjct: 94  EQLCERDQAIRELERKIEDKDRELQSIKLDNEAAWAKDDLLREQDKEIATYR 145

[Close]

BLAST of CsaV3_6G021420 vs. TAIR 10
Match: AT5G53620.1 (unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 9.9e-08
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQL E +++IR+ ERK+E+ DREL +IKLDNEA      +LREQ KE+AT+R
Sbjct: 127 EQLHENERSIREAERKLEEKDRELHAIKLDNEAAWAKEGILREQNKELATFR 178

[Close]

BLAST of CsaV3_6G021420 vs. TAIR 10
Match: AT5G53620.2 (unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 9.9e-08
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQL E +++IR+ ERK+E+ DREL +IKLDNEA      +LREQ KE+AT+R
Sbjct: 127 EQLHENERSIREAERKLEEKDRELHAIKLDNEAAWAKEGILREQNKELATFR 178

[Close]

BLAST of CsaV3_6G021420 vs. TAIR 10
Match: AT5G53620.3 (unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 28929 Blast hits to 19542 proteins in 1425 species: Archae - 211; Bacteria - 3079; Metazoa - 14558; Fungi - 2157; Plants - 966; Viruses - 80; Other Eukaryotes - 7878 (source: NCBI BLink). )

HSP 1 Score: 52.8 bits (125), Expect = 9.9e-08
Identity = 30/52 (57.69%), Postives = 40/52 (76.92%), Query Frame = 0


Query: 1   EQLCERDQAIRKLERKIEDIDRELQSIKLDNEA----NDLLREQEKEIATYR 49
           EQL E +++IR+ ERK+E+ DREL +IKLDNEA      +LREQ KE+AT+R
Sbjct: 127 EQLHENERSIREAERKLEEKDRELHAIKLDNEAAWAKEGILREQNKELATFR 178

The following BLAST results are available for this feature:

BLAST of CsaV3_6G021420 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647045.1	4.9e-17	100.00	hypothetical protein Csa_023015, partial [Cucumis sativus]	[more]
KAG7016797.1	2.4e-11	81.48	hypothetical protein SDJN02_21908 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_008437668.1	3.1e-11	84.62	PREDICTED: uncharacterized protein LOC103483009 isoform X3 [Cucumis melo] >XP_01...	[more]
XP_016898803.1	3.1e-11	84.62	PREDICTED: uncharacterized protein LOC103483009 isoform X1 [Cucumis melo]	[more]
XP_011654569.1	3.1e-11	84.62	uncharacterized protein LOC101218478 isoform X1 [Cucumis sativus] >KAE8647792.1 ...	[more]

BLAST of CsaV3_6G021420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G021420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEM5	2.4e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G284710 PE=4 SV=1	[more]
A0A1S4DSX0	1.5e-11	84.62	uncharacterized protein LOC103483009 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A5D3C1U0	1.5e-11	84.62	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0KLR3	1.5e-11	84.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G138460 PE=4 SV=1	[more]
A0A1S4DS30	1.5e-11	84.62	uncharacterized protein LOC103483009 isoform X6 OS=Cucumis melo OX=3656 GN=LOC10...	[more]

BLAST of CsaV3_6G021420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G53620.1	9.9e-08	57.69	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant...	[more]
AT5G53620.2	9.9e-08	57.69	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant...	[more]
AT5G53620.3	9.9e-08	57.69	unknown protein; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 10..30
None	No IPR available	PANTHER	PTHR35766:SF1	OS08G0543600 PROTEIN	coord: 1..50
None	No IPR available	PANTHER	PTHR35766	OS08G0543600 PROTEIN	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G021420.1	CsaV3_6G021420.1	mRNA