CsaV3_6G021400 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TTGGTAAAGCATGGAGTGAGCAATTCGTTGATGGAGAGAATGGAGATGGAAACAAAGAAATTGTTCCAACTTTCGATTGAAGAGAAGAAAAAGCTATGGCAGAGAGAAGGGGATGTGGAGGGGTTTGGACAAGCTTTCGTTACAAGTGAAGAGCAGAAATTGGATTGGTGTGATATTTTCTTCATTGCTACATCGCCTTTACATTTCAGGAATCCCCGATTGTTTCAAAATCTCCCTCTCTTTGAGGTTCGATAGTTCCTT TTGGTAAAGCATGGAGTGAGCAATTCGTTGATGGAGAGAATGGAGATGGAAACAAAGAAATTGTTCCAACTTTCGATTGAAGAGAAGAAAAAGCTATGGCAGAGAGAAGGGGATGTGGAGGGGTTTGGACAAGCTTTCGTTACAAGTGAAGAGCAGAAATTGGATTGGTGTGATATTTTCTTCATTGCTACATCGCCTTTACATTTCAGGAATCCCCGATTGTTTCAAAATCTCCCTCTCTTTGAGGTTCGATAG TTGGTAAAGCATGGAGTGAGCAATTCGTTGATGGAGAGAATGGAGATGGAAACAAAGAAATTGTTCCAACTTTCGATTGAAGAGAAGAAAAAGCTATGGCAGAGAGAAGGGGATGTGGAGGGGTTTGGACAAGCTTTCGTTACAAGTGAAGAGCAGAAATTGGATTGGTGTGATATTTTCTTCATTGCTACATCGCCTTTACATTTCAGGAATCCCCGATTGTTTCAAAATCTCCCTCTCTTTGAGGTTCGATAG LVKHGVSNSLMERMEMETKKLFQLSIEEKKKLWQREGDVEGFGQAFVTSEEQKLDWCDIFFIATSPLHFRNPRLFQNLPLFEVR* Homology
BLAST of CsaV3_6G021400 vs. NCBI nr
Match: KAE8647043.1 (hypothetical protein Csa_022958 [Cucumis sativus]) HSP 1 Score: 173.7 bits (439), Expect = 6.7e-40 Identity = 83/84 (98.81%), Postives = 84/84 (100.00%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. NCBI nr
Match: XP_004146011.3 (LOW QUALITY PROTEIN: protein SRG1 [Cucumis sativus]) HSP 1 Score: 156.8 bits (395), Expect = 8.5e-35 Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. NCBI nr
Match: KGN55530.2 (hypothetical protein Csa_012011 [Cucumis sativus]) HSP 1 Score: 156.8 bits (395), Expect = 8.5e-35 Identity = 74/80 (92.50%), Postives = 78/80 (97.50%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. NCBI nr
Match: KAA0066692.1 (protein SRG1-like [Cucumis melo var. makuwa]) HSP 1 Score: 154.8 bits (390), Expect = 3.2e-34 Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. NCBI nr
Match: TYK27842.1 (putative 2-oxoglutarate/Fe(II)-dependent dioxygenase [Cucumis melo var. makuwa]) HSP 1 Score: 154.8 bits (390), Expect = 3.2e-34 Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy Swiss-Prot
Match: Q39224 (Protein SRG1 OS=Arabidopsis thaliana OX=3702 GN=SRG1 PE=2 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 3.6e-20 Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy Swiss-Prot
Match: D4N501 (Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum OX=3469 GN=DIOX2 PE=2 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 1.4e-19 Identity = 45/80 (56.25%), Postives = 56/80 (70.00%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy Swiss-Prot
Match: D4N500 (Thebaine 6-O-demethylase OS=Papaver somniferum OX=3469 GN=T6ODM PE=1 SV=1) HSP 1 Score: 92.0 bits (227), Expect = 3.4e-18 Identity = 42/80 (52.50%), Postives = 55/80 (68.75%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy Swiss-Prot
Match: D4N502 (Codeine O-demethylase OS=Papaver somniferum OX=3469 GN=CODM PE=1 SV=1) HSP 1 Score: 86.7 bits (213), Expect = 1.4e-16 Identity = 39/80 (48.75%), Postives = 53/80 (66.25%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy Swiss-Prot
Match: A2A1A0 (S-norcoclaurine synthase 1 OS=Coptis japonica OX=3442 GN=NCS1 PE=1 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 1.7e-14 Identity = 36/79 (45.57%), Postives = 52/79 (65.82%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy TrEMBL
Match: A0A5D3DWF3 (Putative 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00190 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34 Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy TrEMBL
Match: A0A5A7VEA3 (Protein SRG1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold271G00250 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 1.6e-34 Identity = 73/80 (91.25%), Postives = 78/80 (97.50%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy TrEMBL
Match: A0A5D3DVK8 (Putative 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00240 PE=3 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33 Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy TrEMBL
Match: A0A1S3CK11 (probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Cucumis melo OX=3656 GN=LOC103501850 PE=3 SV=1) HSP 1 Score: 152.1 bits (383), Expect = 1.0e-33 Identity = 72/80 (90.00%), Postives = 77/80 (96.25%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. ExPASy TrEMBL
Match: A0A5D3DWN6 (Putative 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G00250 PE=3 SV=1) HSP 1 Score: 146.7 bits (369), Expect = 4.3e-32 Identity = 69/80 (86.25%), Postives = 75/80 (93.75%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. TAIR 10
Match: AT1G17020.1 (senescence-related gene 1 ) HSP 1 Score: 98.6 bits (244), Expect = 2.6e-21 Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. TAIR 10
Match: AT4G25300.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 96.3 bits (238), Expect = 1.3e-20 Identity = 41/80 (51.25%), Postives = 55/80 (68.75%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. TAIR 10
Match: AT4G25310.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 94.7 bits (234), Expect = 3.7e-20 Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. TAIR 10
Match: AT1G17010.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 92.0 bits (227), Expect = 2.4e-19 Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 0
BLAST of CsaV3_6G021400 vs. TAIR 10
Match: AT1G78550.1 (2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein ) HSP 1 Score: 92.0 bits (227), Expect = 2.4e-19 Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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