CsaV3_6G021330 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G021330
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 14383702 .. 14383860 (+)
RNA-Seq Expression	CsaV3_6G021330
Synteny	CsaV3_6G021330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATCGAGCGGCGGCTTCACGAACCAGGACGAACAGAGACAGAATGAAGGGACTGAGCGATGACGCTCTGGCTTTAGCCCGACGAACGGCGACGTGTACGGCTGCTGGGCTTCGTCGAATGGAAAAGAGGAAGATGGTGGCGGCTTCGCGAACTTAG

mRNA sequence

ATGAATCGAGCGGCGGCTTCACGAACCAGGACGAACAGAGACAGAATGAAGGGACTGAGCGATGACGCTCTGGCTTTAGCCCGACGAACGGCGACGTGTACGGCTGCTGGGCTTCGTCGAATGGAAAAGAGGAAGATGGTGGCGGCTTCGCGAACTTAG

Coding sequence (CDS)

ATGAATCGAGCGGCGGCTTCACGAACCAGGACGAACAGAGACAGAATGAAGGGACTGAGCGATGACGCTCTGGCTTTAGCCCGACGAACGGCGACGTGTACGGCTGCTGGGCTTCGTCGAATGGAAAAGAGGAAGATGGTGGCGGCTTCGCGAACTTAG

Protein sequence

MNRAAASRTRTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVAASRT*

Homology

[Close]

BLAST of CsaV3_6G021330 vs. NCBI nr
Match: KGN47280.1 (hypothetical protein Csa_022993 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 1.5e-16
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNRAAASRTRTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVAASRT 53
          MNRAAASRTRTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVAASRT
Sbjct: 1  MNRAAASRTRTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVAASRT 52

[Close]

BLAST of CsaV3_6G021330 vs. NCBI nr
Match: KGN54894.1 (hypothetical protein Csa_011981, partial [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 8.8e-06
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 10 RTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVA 49
          R +RD MKGLS+DALALARRT  CTAAGLRR EKRKMVA
Sbjct: 20 RDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVA 58

[Close]

BLAST of CsaV3_6G021330 vs. ExPASy TrEMBL
Match: A0A0A0KC31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G280200 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 7.0e-17
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 1  MNRAAASRTRTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVAASRT 53
          MNRAAASRTRTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVAASRT
Sbjct: 1  MNRAAASRTRTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVAASRT 52

[Close]

BLAST of CsaV3_6G021330 vs. ExPASy TrEMBL
Match: A0A0A0L1G4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G575360 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 4.3e-06
Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 0


Query: 10 RTNRDRMKGLSDDALALARRTATCTAAGLRRMEKRKMVA 49
          R +RD MKGLS+DALALARRT  CTAAGLRR EKRKMVA
Sbjct: 20 RDDRDGMKGLSNDALALARRTTACTAAGLRRTEKRKMVA 58

The following BLAST results are available for this feature:

BLAST of CsaV3_6G021330 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47280.1	1.5e-16	100.00	hypothetical protein Csa_022993 [Cucumis sativus]	[more]
KGN54894.1	8.8e-06	82.05	hypothetical protein Csa_011981, partial [Cucumis sativus]	[more]

BLAST of CsaV3_6G021330 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G021330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC31	7.0e-17	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G280200 PE=4 SV=1	[more]
A0A0A0L1G4	4.3e-06	82.05	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G575360 PE=4 SV=1	[more]

BLAST of CsaV3_6G021330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G021330.1	CsaV3_6G021330.1	mRNA