CsaV3_6G021300 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G021300
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	E3 ubiquitin-protein ligase ATL42-like
Location	chr6: 14356123 .. 14358537 (-)
RNA-Seq Expression	CsaV3_6G021300
Synteny	CsaV3_6G021300

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTTGATGCATTTGTTGGTGGTGCCATGAATAGAAAGGAAAAGAGGGAGAGGTAGTTACCGGTCAGATGCTCCTAGGGGACGGTTTGGTTCTTATAGTTTGGGTCGAGGAAGCAGCCAAGATGGAAGCGACTATGGTCAGTTGAGAGGCAACGGTTTCCCTCAGTGGGTTACCACAAGGTTCAATAGTAATGTTAATTTGTGGGGAATTGATTATCAAGATAAGATGGTACTTTTCCCCCTTAGATGGTTTTTAAGATACAATTCAAGTGGAAAATTTTTGGCATTTCAAGTACAAGCACTAGTTAGACAATGGGAGAGAAATAGACTCGAGAGATGAAGACCCTTTTCATTAAATTTTACCCTTTTGTAGTAGTTCCGTAGTCATTAGGTGAATACTGTTGCCATTTTACAATCAAATAATGTATAATTGAGTGAGCATCTTGCCAAATAAACGAACAATTTAGATCCTTGAATGCCAGTTTTTTCATCATGCTTTGTAGTGAGATTTCGTTAATCAAAATCAATGAACAACTTGATTTATGAGATGTTTGAATTTTGAAGTTTAGTTTGAAAAAAAAAAAAAAAAACTCATGTGTTGTGTATAGTTGTTTTTCAAGGATAACGTTGGATCATGATACATGTAAGTCTTTCGATGTATAACAATATCATAGTGGAGTATGGAAAAAAAAATTAAGTGAATTTTTATTTTATGTTTTAGTTATTTTTCTAATTTTACAAACATATATATCCCTTTTAAGTGGGTCTATTCCGCACGCATCTCAAACCTATCTCACAACATTTTGCACATTTCAAACTTTCACAATCAAATTGCTACCGTTCCTAAGCTATCTCGCACACATCTCGCATACATCTTGCACCTATCTCGCACCTATCTCGTACACATCTCGCACGTATCTCGTACACATCTCGCACCTATCTCGTACACATCTCACACCTATCTCGTAGAAAACGTGGGCATTCTAGGACAATCCATAGCTGATTTAACTCCATAGTCGTAAAGATTGTGAGGATGAAAAATAGCATCAACTCCATAGCTGATTTAACTCCATACACCTCCTCGTCGGAATCCAATTTTCGCAGCAAGATCACGAGTCCCAAGTCATGTGCCACAATAAAATCACCGGAACTACCATTGTTTTTGTAGTTTTGTGAATGAAAAATAGGAAAGGAAGAAAAAGGAAATGAGGAAAAATGAAATACGCATAGGGAGAGATGAGAGAAAAATGAAATATTCTTTTTGGAAGTGAGAAAATGGAGGAAGAAGGAGAAGGAATTCCATAAATTGCTTTTTAGGTTTTTTTTTATAACCAAAGGGTAATATAGACTTTTCCAGGTTAATTTGTCCTAAATGTCATCTTTTTTAAAATCCATCCTAAAACTCTTTAAACCCTTAAAAAAGTATCTTCTTCTTCTTCTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTAATATCCCCAGTTTAATGCCTAGCTATTGTTTTCTTCCTCTCTTAATTTATCTGCTACTTACCTCCCAAGTAATGCCTACCAAATAACAGCCCCACATTTGTCAACAAAATTTAAAATTCCCTCAACCTTGTCATCTTCTTTTATGAATTTCAAACTACAAAAATACTTGTAGTTTTTCAATTGATTTATGAAGGTGAAGTCATAGAACAGCAGCCAGAGAAGAATACATGAACCACCACAAAGCTGATGGATGAGTGATTCTCTTTGTAGAGGTGTATTTAAGGTCTATTTCATATAAAAACCTCTACTCCTCTTTCCCTTTTTCATGCCTATCAAAAAGGGAGTTTTTAGCTTCATTTGATTGAGATATTGGCTCTTTTGAAGATCAGTAGATTCCGAAAAAGTATTCGCCATTGAAGAATCAATGATCCGGTTCAGTTTGAATGTCTTTTTCCTCTTTTCTGTGTTCTTTGTTGTTGAAGCTCAAATGGATTCTCAAGATGCTGAAAACAGTGCTTTTCAGCCAAGTCTTGGCTTCGTGATCGGGATTCTAGGAGTTATGTTTTTGTTGACATTTATTCTTCTTGTTTATGCAAAGTTCTGCCATAGAAGAGCTTCTATTAGTGTGGATGATGTAAATCATCCTAGACAAATCAGGTCAAGTCCTCGGTTTTCTGGAATTGATAAGACGGTGATCGAATCTCTTCCATTCTTTAGATTCTCCACACTGAAAGGTACCAAAGAAGGGCTGGAATGTGCAGTCTGTCTTTCGAAATTTGAAGATATCGAAATTCTTCGGTTATTGCCAAAGTGCAAGCATGCTTTTCATATTAACTGCATCGATCATTGGCTCGAAAAACATGCTAGCTGTCCTCTTTGCAGGCGAAGAGTTGGCTCCGAGGACTTGA

mRNA sequence

ATGGTTCTTGATGCATTTGTTGGTGGTGCCATGAATAGAAAGGAAAAGAGGGAGAGTTTGGGTCGAGGAAGCAGCCAAGATGGAAGCGACTATGGTCAGTTGAGAGGCAACGGTTTCCCTCAGTGGGTTACCACAAGGTTCAATAGTAATGTTAATTTGTGGGGAATTGATTATCAAGATAAGATGATTGTGAGGATGAAAAATAGCATCAACTCCATAGCTGATTTAACTCCATACACCTCCTCGTCGGAATCCAATTTTCGCAGCAAGATCACGAGTCCCAAGTCATGTGCCACAATAAAATCACCGGAACTACCATTATCAGTAGATTCCGAAAAAGTATTCGCCATTGAAGAATCAATGATCCGGTTCAGTTTGAATGTCTTTTTCCTCTTTTCTGTGTTCTTTGTTGTTGAAGCTCAAATGGATTCTCAAGATGCTGAAAACAGTGCTTTTCAGCCAAGTCTTGGCTTCGTGATCGGGATTCTAGGAGTTATGTTTTTGTTGACATTTATTCTTCTTGTTTATGCAAAGTTCTGCCATAGAAGAGCTTCTATTAGTGTGGATGATGTAAATCATCCTAGACAAATCAGGTCAAGTCCTCGGTTTTCTGGAATTGATAAGACGGTACCAAAGAAGGGCTGGAATGTGCAGTCTGTCTTTCGAAATTTGAAGATATCGAAATTCTTCGGTTATTGCCAAAGTGCAAGCATGCTTTTCATATTAACTGCATCGATCATTGGCTCGAAAAACATGCTAGCTGTCCTCTTTGCAGGCGAAGAGTTGGCTCCGAGGACTTGA

Coding sequence (CDS)

ATGGTTCTTGATGCATTTGTTGGTGGTGCCATGAATAGAAAGGAAAAGAGGGAGAGTTTGGGTCGAGGAAGCAGCCAAGATGGAAGCGACTATGGTCAGTTGAGAGGCAACGGTTTCCCTCAGTGGGTTACCACAAGGTTCAATAGTAATGTTAATTTGTGGGGAATTGATTATCAAGATAAGATGATTGTGAGGATGAAAAATAGCATCAACTCCATAGCTGATTTAACTCCATACACCTCCTCGTCGGAATCCAATTTTCGCAGCAAGATCACGAGTCCCAAGTCATGTGCCACAATAAAATCACCGGAACTACCATTATCAGTAGATTCCGAAAAAGTATTCGCCATTGAAGAATCAATGATCCGGTTCAGTTTGAATGTCTTTTTCCTCTTTTCTGTGTTCTTTGTTGTTGAAGCTCAAATGGATTCTCAAGATGCTGAAAACAGTGCTTTTCAGCCAAGTCTTGGCTTCGTGATCGGGATTCTAGGAGTTATGTTTTTGTTGACATTTATTCTTCTTGTTTATGCAAAGTTCTGCCATAGAAGAGCTTCTATTAGTGTGGATGATGTAAATCATCCTAGACAAATCAGGTCAAGTCCTCGGTTTTCTGGAATTGATAAGACGGTACCAAAGAAGGGCTGGAATGTGCAGTCTGTCTTTCGAAATTTGAAGATATCGAAATTCTTCGGTTATTGCCAAAGTGCAAGCATGCTTTTCATATTAACTGCATCGATCATTGGCTCGAAAAACATGCTAGCTGTCCTCTTTGCAGGCGAAGAGTTGGCTCCGAGGACTTGA

Protein sequence

MVLDAFVGGAMNRKEKRESLGRGSSQDGSDYGQLRGNGFPQWVTTRFNSNVNLWGIDYQDKMIVRMKNSINSIADLTPYTSSSESNFRSKITSPKSCATIKSPELPLSVDSEKVFAIEESMIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRASISVDDVNHPRQIRSSPRFSGIDKTVPKKGWNVQSVFRNLKISKFFGYCQSASMLFILTASIIGSKNMLAVLFAGEELAPRT*

Homology

[Close]

BLAST of CsaV3_6G021300 vs. NCBI nr
Match: KAE8647035.1 (hypothetical protein Csa_022945 [Cucumis sativus])

HSP 1 Score: 517.3 bits (1331), Expect = 7.8e-143
Identity = 266/266 (100.00%), Postives = 266/266 (100.00%), Query Frame = 0


Query: 1   MVLDAFVGGAMNRKEKRESLGRGSSQDGSDYGQLRGNGFPQWVTTRFNSNVNLWGIDYQD 60
           MVLDAFVGGAMNRKEKRESLGRGSSQDGSDYGQLRGNGFPQWVTTRFNSNVNLWGIDYQD
Sbjct: 1   MVLDAFVGGAMNRKEKRESLGRGSSQDGSDYGQLRGNGFPQWVTTRFNSNVNLWGIDYQD 60

Query: 61  KMIVRMKNSINSIADLTPYTSSSESNFRSKITSPKSCATIKSPELPLSVDSEKVFAIEES 120
           KMIVRMKNSINSIADLTPYTSSSESNFRSKITSPKSCATIKSPELPLSVDSEKVFAIEES
Sbjct: 61  KMIVRMKNSINSIADLTPYTSSSESNFRSKITSPKSCATIKSPELPLSVDSEKVFAIEES 120

Query: 121 MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 180
           MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC
Sbjct: 121 MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 180

Query: 181 HRRASISVDDVNHPRQIRSSPRFSGIDKTVPKKGWNVQSVFRNLKISKFFGYCQSASMLF 240
           HRRASISVDDVNHPRQIRSSPRFSGIDKTVPKKGWNVQSVFRNLKISKFFGYCQSASMLF
Sbjct: 181 HRRASISVDDVNHPRQIRSSPRFSGIDKTVPKKGWNVQSVFRNLKISKFFGYCQSASMLF 240

Query: 241 ILTASIIGSKNMLAVLFAGEELAPRT 267
           ILTASIIGSKNMLAVLFAGEELAPRT
Sbjct: 241 ILTASIIGSKNMLAVLFAGEELAPRT 266

[Close]

BLAST of CsaV3_6G021300 vs. NCBI nr
Match: XP_008462695.1 (PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis melo] >KAA0046521.1 E3 ubiquitin-protein ligase ATL42-like [Cucumis melo var. makuwa] >TYK28738.1 E3 ubiquitin-protein ligase ATL42-like [Cucumis melo var. makuwa])

HSP 1 Score: 161.8 bits (408), Expect = 8.3e-36
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 121 MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 180
           MI+ SLNV FLFSVFFVVEAQ+DSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC
Sbjct: 1   MIQLSLNVCFLFSVFFVVEAQIDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 60

Query: 181 HRRASISVDDVNHPRQIRSSPRFSGIDKTV 211
           HRRASISVD VNHPRQIRSS RFSGIDKTV
Sbjct: 61  HRRASISVDGVNHPRQIRSSSRFSGIDKTV 90

[Close]

BLAST of CsaV3_6G021300 vs. NCBI nr
Match: XP_038878637.1 (E3 ubiquitin-protein ligase ATL42-like [Benincasa hispida])

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-32
Identity = 76/90 (84.44%), Postives = 82/90 (91.11%), Query Frame = 0


Query: 121 MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 180
           MIR S  VFFLF VFFVVEAQ+DSQDAENSAFQPSLGFVIGILGVMF+LTFILLVYAK+C
Sbjct: 1   MIRLSSIVFFLFFVFFVVEAQVDSQDAENSAFQPSLGFVIGILGVMFMLTFILLVYAKYC 60

Query: 181 HRRASISVDDVNHPRQIRSSPRFSGIDKTV 211
           HRR+S+  DDV HPRQIR+S RFSGIDKTV
Sbjct: 61  HRRSSVRGDDVTHPRQIRTSSRFSGIDKTV 90

[Close]

BLAST of CsaV3_6G021300 vs. NCBI nr
Match: XP_011659864.2 (LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase ATL42-like [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 5.8e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 142 MDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRASISVDDVNHPRQIRSSP 201
           MDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRASISVDDVNHPRQIRSSP
Sbjct: 1   MDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRASISVDDVNHPRQIRSSP 60

Query: 202 RFSGIDKTV 211
           RFSGIDKTV
Sbjct: 61  RFSGIDKTV 69

[Close]

BLAST of CsaV3_6G021300 vs. NCBI nr
Match: KAE8652893.1 (hypothetical protein Csa_022675 [Cucumis sativus])

HSP 1 Score: 139.0 bits (349), Expect = 5.8e-29
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 142 MDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRASISVDDVNHPRQIRSSP 201
           MDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRASISVDDVNHPRQIRSSP
Sbjct: 1   MDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCHRRASISVDDVNHPRQIRSSP 60

Query: 202 RFSGIDKTV 211
           RFSGIDKTV
Sbjct: 61  RFSGIDKTV 69

[Close]

BLAST of CsaV3_6G021300 vs. ExPASy Swiss-Prot
Match: Q5XF85 (E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 SV=2)

HSP 1 Score: 57.4 bits (137), Expect = 2.9e-07
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 152 FQPSLGFVIGILGVMFLLTFILLVYAKFCH-RRASISVDDVNHPRQIR----------SS 210
           F+PSL  V G+L +MF LTF+LLVYAK CH    S S D   H R++R          SS
Sbjct: 33  FEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASS 92

[Close]

BLAST of CsaV3_6G021300 vs. ExPASy Swiss-Prot
Match: Q9SL78 (Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.8e-04
Identity = 33/95 (34.74%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 126 LNVFFLFSVFF-VVEAQMDSQD---AENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCH 185
           +++ F F +F   V AQ        A +  F+PSL  + G+  ++F LTF+LLVYAK  H
Sbjct: 7   ISILFFFIIFLDYVSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFH 66

Query: 186 RRASISVDD----VNHPR----QIRSSPRFSGIDK 209
                  D     + H R        S RFSG+DK
Sbjct: 67  NDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDK 101

[Close]

BLAST of CsaV3_6G021300 vs. ExPASy TrEMBL
Match: A0A5D3DZ48 (E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G00770 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.0e-36
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 121 MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 180
           MI+ SLNV FLFSVFFVVEAQ+DSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC
Sbjct: 1   MIQLSLNVCFLFSVFFVVEAQIDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 60

Query: 181 HRRASISVDDVNHPRQIRSSPRFSGIDKTV 211
           HRRASISVD VNHPRQIRSS RFSGIDKTV
Sbjct: 61  HRRASISVDGVNHPRQIRSSSRFSGIDKTV 90

[Close]

BLAST of CsaV3_6G021300 vs. ExPASy TrEMBL
Match: A0A1S3CHK3 (E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo OX=3656 GN=LOC103500995 PE=4 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 4.0e-36
Identity = 84/90 (93.33%), Postives = 86/90 (95.56%), Query Frame = 0


Query: 121 MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 180
           MI+ SLNV FLFSVFFVVEAQ+DSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC
Sbjct: 1   MIQLSLNVCFLFSVFFVVEAQIDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 60

Query: 181 HRRASISVDDVNHPRQIRSSPRFSGIDKTV 211
           HRRASISVD VNHPRQIRSS RFSGIDKTV
Sbjct: 61  HRRASISVDGVNHPRQIRSSSRFSGIDKTV 90

[Close]

BLAST of CsaV3_6G021300 vs. ExPASy TrEMBL
Match: A0A6J1CUL6 (E3 ubiquitin-protein ligase ATL42-like OS=Momordica charantia OX=3673 GN=LOC111014427 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 2.6e-27
Identity = 71/90 (78.89%), Postives = 76/90 (84.44%), Query Frame = 0


Query: 121 MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 180
           M R SL  F LFSVFF VEAQ+D QD+ENSAFQPSLGFVIGILGVMFLLTF+LL+YAKFC
Sbjct: 1   MKRLSLVAFCLFSVFFHVEAQIDPQDSENSAFQPSLGFVIGILGVMFLLTFVLLLYAKFC 60

Query: 181 HRRASISVDDVNHPRQIRSSPRFSGIDKTV 211
           HRR S+  D VNHP QIRSS R SGIDKTV
Sbjct: 61  HRR-SVRGDSVNHPAQIRSSSRHSGIDKTV 89

[Close]

BLAST of CsaV3_6G021300 vs. ExPASy TrEMBL
Match: A0A6J1EPJ8 (E3 ubiquitin-protein ligase ATL42-like OS=Cucurbita moschata OX=3662 GN=LOC111436403 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 4.6e-24
Identity = 71/109 (65.14%), Postives = 84/109 (77.06%), Query Frame = 0


Query: 106 PLSVDSEKVF-AIEESMIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILG 165
           P S  S++VF AIEESMIR +L  F LFSV F V+AQ  SQDAEN +FQP+LGFVIGILG
Sbjct: 24  PFSCLSKRVFSAIEESMIRLNLVTFCLFSVLFYVQAQPSSQDAENYSFQPNLGFVIGILG 83

Query: 166 VMFLLTFILLVYAKFCHRRASISVDD-VNHPRQIRSSPR--FSGIDKTV 211
           VMF+LTF+LLVYAK+CH R+S+ V++ V H  QIRSS      GIDKTV
Sbjct: 84  VMFVLTFVLLVYAKYCHNRSSVHVNNGVTHGGQIRSSSSSPILGIDKTV 132

[Close]

BLAST of CsaV3_6G021300 vs. ExPASy TrEMBL
Match: A0A6J1KW64 (E3 ubiquitin-protein ligase ATL42-like OS=Cucurbita maxima OX=3661 GN=LOC111499247 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 2.4e-20
Identity = 61/93 (65.59%), Postives = 72/93 (77.42%), Query Frame = 0


Query: 121 MIRFSLNVFFLFSVFFVVEAQMDSQDAENSAFQPSLGFVIGILGVMFLLTFILLVYAKFC 180
           MIR +L  F LFSV F V+AQ  SQDAEN +FQP+LGFVIGILGVMF+LTF+LLVYAK+C
Sbjct: 1   MIRLNLVTFCLFSVLFYVQAQPSSQDAENYSFQPNLGFVIGILGVMFVLTFVLLVYAKYC 60

Query: 181 HRRASISVDD-VNHPRQIRSSPR--FSGIDKTV 211
           H R+S+ V++ V H  QIRSS      GIDKTV
Sbjct: 61  HNRSSVHVNNGVTHGGQIRSSSSTPILGIDKTV 93

[Close]

BLAST of CsaV3_6G021300 vs. TAIR 10
Match: AT4G28890.1 (RING/U-box superfamily protein )

HSP 1 Score: 57.4 bits (137), Expect = 2.1e-08
Identity = 35/69 (50.72%), Postives = 42/69 (60.87%), Query Frame = 0


Query: 152 FQPSLGFVIGILGVMFLLTFILLVYAKFCH-RRASISVDDVNHPRQIR----------SS 210
           F+PSL  V G+L +MF LTF+LLVYAK CH    S S D   H R++R          SS
Sbjct: 33  FEPSLAVVTGVLAIMFALTFVLLVYAKCCHIDLRSGSGDRRRHDRRLRQGIFFNRSTASS 92

[Close]

BLAST of CsaV3_6G021300 vs. TAIR 10
Match: AT2G20030.1 (RING/U-box superfamily protein )

HSP 1 Score: 48.1 bits (113), Expect = 1.3e-05
Identity = 33/95 (34.74%), Postives = 46/95 (48.42%), Query Frame = 0


Query: 126 LNVFFLFSVFF-VVEAQMDSQD---AENSAFQPSLGFVIGILGVMFLLTFILLVYAKFCH 185
           +++ F F +F   V AQ        A +  F+PSL  + G+  ++F LTF+LLVYAK  H
Sbjct: 7   ISILFFFIIFLDYVSAQSPPPPNLYATSDLFKPSLAIITGVFSIVFTLTFVLLVYAKCFH 66

Query: 186 RRASISVDD----VNHPR----QIRSSPRFSGIDK 209
                  D     + H R        S RFSG+DK
Sbjct: 67  NDLRSETDSDGERIRHDRLWQGLFNRSSRFSGLDK 101

The following BLAST results are available for this feature:

BLAST of CsaV3_6G021300 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8647035.1	7.8e-143	100.00	hypothetical protein Csa_022945 [Cucumis sativus]	[more]
XP_008462695.1	8.3e-36	93.33	PREDICTED: E3 ubiquitin-protein ligase ATL42-like [Cucumis melo] >KAA0046521.1 E...	[more]
XP_038878637.1	4.3e-32	84.44	E3 ubiquitin-protein ligase ATL42-like [Benincasa hispida]	[more]
XP_011659864.2	5.8e-29	100.00	LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase ATL42-like [Cucumis sativus]	[more]
KAE8652893.1	5.8e-29	100.00	hypothetical protein Csa_022675 [Cucumis sativus]	[more]

BLAST of CsaV3_6G021300 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XF85	2.9e-07	50.72	E3 ubiquitin-protein ligase ATL42 OS=Arabidopsis thaliana OX=3702 GN=ATL42 PE=1 ...	[more]
Q9SL78	1.8e-04	34.74	Putative RING-H2 finger protein ATL12 OS=Arabidopsis thaliana OX=3702 GN=ATL12 P...	[more]

BLAST of CsaV3_6G021300 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZ48	4.0e-36	93.33	E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3CHK3	4.0e-36	93.33	E3 ubiquitin-protein ligase ATL42-like OS=Cucumis melo OX=3656 GN=LOC103500995 P...	[more]
A0A6J1CUL6	2.6e-27	78.89	E3 ubiquitin-protein ligase ATL42-like OS=Momordica charantia OX=3673 GN=LOC1110...	[more]
A0A6J1EPJ8	4.6e-24	65.14	E3 ubiquitin-protein ligase ATL42-like OS=Cucurbita moschata OX=3662 GN=LOC11143...	[more]
A0A6J1KW64	2.4e-20	65.59	E3 ubiquitin-protein ligase ATL42-like OS=Cucurbita maxima OX=3661 GN=LOC1114992...	[more]

BLAST of CsaV3_6G021300 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28890.1	2.1e-08	50.72	RING/U-box superfamily protein	[more]
AT2G20030.1	1.3e-05	34.74	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..33
None	No IPR available	PANTHER	PTHR46539	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 140..210
None	No IPR available	PANTHER	PTHR46539:SF1	E3 UBIQUITIN-PROTEIN LIGASE ATL42	coord: 140..210

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G021300.1	CsaV3_6G021300.1	mRNA