CsaV3_6G019150 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G019150
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptiondr1-associated corepressor homolog isoform X2
Locationchr6: 13956748 .. 13957780 (+)
RNA-Seq ExpressionCsaV3_6G019150
SyntenyCsaV3_6G019150
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTTTTTCTTAAAAACTATTGAGGTTGAAACTCACAGTACTTGGAGATTTATACAATGAGCAAAAGGAGGCACACCCAGATATCTCAACTAGGTTGATACCCTTTTGATGCTCTCATCATATCTACACAAAACTAAGAAACAGTCTGTCTAAGAAAGTTGTCTTACAGCATTTACAGCCTACAATAGTGATACATGTGAAATGAAAACAATAGATACAATCCTTTAAGCGATAAGACGAAGACATGAGGAAATTATCCATCAATGATACAAATACAAGATGACTCTAAAAACTGAAACCTCTGCTCAAACAGAACTTCCAACACTTCAGAAGGTTTACTCAATTCGTCTGTTAGAAGAAGCCTGTAAGGAACGAAATATGATTGCACCAGATAGTTCTTTACCTTCAATCAATCTTACTGCTCAACTTAAAACTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCTATGTTCATATCATCCAAGTTTTCGAGGTAGAGGTAATCAAAACAATCACGTGATGGACACTTTTTTCATCGAAACTGGAATAATAACAGCAGGCCGCAATTGTCAGATATGTGGACATTTGGTCACACAGCTATTTGGTGTTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTTTACTTCTTGAAATTGTAATTTTCCATTTTCTCATAGTCAGAATAGTGGTCCTGTTAAAAATGGATAATGTGCTCAAGCAAGATTTGAACACTGATATCAACTCGTATCCAAATATGGGCGTTATCAACCACGTCACAAATGATTTCAACAATTTCTCTAGTGTTGTTACAATGGAGGCAATAACAGCAAAGTTGATAATGGTGCAGGTCTGCAAGCTTAAAATACTGGTTCTTCTTCATTTAGTCGTAAACCTCTTTGGCCCTATTTTTCATCTAAAAAATCTCCATGTTCCTAAAATGATAAAAAAATTAATTGGTGTTAAAATTTGCTGCGGATAATCATGTATACTATGAGTTTCATCCTCATGTTTGTTTTGTGAAGGAC

mRNA sequence

ATGACTCTAAAAACTGAAACCTCTGCTCAAACAGAACTTCCAACACTTCAGAAGGTTTACTCAATTCGTCTGTTAGAAGAAGCCTGTAAGGAACGAAATATGATTGCACCAGATAGTTCTTTACCTTCAATCAATCTTACTGCTCAACTTAAAACTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCTATGTTCATATCATCCAAGTTTTCGAGGTAGAGGTAATCAAAACAATCACGTGATGGACACTTTTTTCATCGAAACTGGAATAATAACAGCAGGCCGCAATTGTCAGATATGTGGACATTTGGTCACACAGCTATTTGGTGTTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTTTACTTCTTGA

Coding sequence (CDS)

ATGACTCTAAAAACTGAAACCTCTGCTCAAACAGAACTTCCAACACTTCAGAAGGTTTACTCAATTCGTCTGTTAGAAGAAGCCTGTAAGGAACGAAATATGATTGCACCAGATAGTTCTTTACCTTCAATCAATCTTACTGCTCAACTTAAAACTCAGAAAGATGCAAGTAATTTCTCTTCTGAATCTCTATGTTCATATCATCCAAGTTTTCGAGGTAGAGGTAATCAAAACAATCACGTGATGGACACTTTTTTCATCGAAACTGGAATAATAACAGCAGGCCGCAATTGTCAGATATGTGGACATTTGGTCACACAGCTATTTGGTGTTACTATCCTTATAATGGGGTATCAGAATGGAAATAACTTTACTTCTTGA

Protein sequence

MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFSSESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQNGNNFTS*
Homology
[Close]
BLAST of CsaV3_6G019150 vs. NCBI nr
Match: KGN47211.1 (hypothetical protein Csa_017016 [Cucumis sativus])

HSP 1 Score: 253.8 bits (647), Expect = 7.7e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60
           MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS
Sbjct: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60

Query: 61  SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN 120
           SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN
Sbjct: 61  SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN 120

Query: 121 GNNFTS 127
           GNNFTS
Sbjct: 121 GNNFTS 126

[Close]
BLAST of CsaV3_6G019150 vs. ExPASy TrEMBL
Match: A0A0A0KHG0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G205850 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 3.7e-64
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0 

Query: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60
           MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS
Sbjct: 1   MTLKTETSAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNFS 60

Query: 61  SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN 120
           SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN
Sbjct: 61  SESLCSYHPSFRGRGNQNNHVMDTFFIETGIITAGRNCQICGHLVTQLFGVTILIMGYQN 120

Query: 121 GNNFTS 127
           GNNFTS
Sbjct: 121 GNNFTS 126

[Close]
BLAST of CsaV3_6G019150 vs. ExPASy TrEMBL
Match: A0A6J1C8R2 (dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.6e-04
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 0 

Query: 8   SAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNF-------- 67
           SA+T+  TLQ+VYS+ L  E   ERN I  D +LPS+NLT Q K    A +         
Sbjct: 111 SARTQTQTLQEVYSLLLSHEGRNERNSINTDGTLPSVNLTQQTKNSNSAQSIDGQRPYMQ 170

Query: 68  SSESLCSYHPSFRGRGNQNN 80
           ++ S  S +P+FR   N NN
Sbjct: 171 NNRSKNSGNPNFRRNWNSNN 190

[Close]
BLAST of CsaV3_6G019150 vs. ExPASy TrEMBL
Match: A0A6J1C6N9 (dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008464 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 9.6e-04
Identity = 33/80 (41.25%), Postives = 44/80 (55.00%), Query Frame = 0 

Query: 8   SAQTELPTLQKVYSIRLLEEACKERNMIAPDSSLPSINLTAQLKTQKDASNF-------- 67
           SA+T+  TLQ+VYS+ L  E   ERN I  D +LPS+NLT Q K    A +         
Sbjct: 111 SARTQTQTLQEVYSLLLSHEGRNERNSINTDGTLPSVNLTQQTKNSNSAQSIDGQRPYMQ 170

Query: 68  SSESLCSYHPSFRGRGNQNN 80
           ++ S  S +P+FR   N NN
Sbjct: 171 NNRSKNSGNPNFRRNWNSNN 190

The following BLAST results are available for this feature:
BLAST of CsaV3_6G019150 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47211.17.7e-64100.00hypothetical protein Csa_017016 [Cucumis sativus][more]
BLAST of CsaV3_6G019150 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G019150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KHG03.7e-64100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G205850 PE=4 SV=1[more]
A0A6J1C8R29.6e-0441.25dr1-associated corepressor homolog isoform X2 OS=Momordica charantia OX=3673 GN=... [more]
A0A6J1C6N99.6e-0441.25dr1-associated corepressor homolog isoform X1 OS=Momordica charantia OX=3673 GN=... [more]
BLAST of CsaV3_6G019150 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G019150.1CsaV3_6G019150.1mRNA