CsaV3_6G019130 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G019130
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Inosine triphosphate pyrophosphatase family protein
Location	chr6: 13945034 .. 13945500 (+)
RNA-Seq Expression	CsaV3_6G019130
Synteny	CsaV3_6G019130

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGTGACGTTTTGTGACCGGCAACGCCAAGAAGCTCGAGGAAGTTTGAGCAATATTGGGAAATTCAATTCCTTTTCGTTCTCTCAAGCTTGACTTGACGAAGTTGCAAGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAA

mRNA sequence

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAA

Coding sequence (CDS)

ATGTGTTTTTGGAGTTTGATCCAATCTCCTGATCAAAAATTTGAGGAATTCGATTCCAAAATGGCGACAAGAATTGGATTGGTGCTTCCTTCTAGCCGGCGAGCCAGAAGATATATCGAAAGAGAAGCTCGGTTGGCTGCTATTCAGGTTAATGGGTCGGTTCTGGTGGAAGATACATGCCTCTGCTTCAATGCTTTGAAGGGTCTTCCTAGGTTATTGCTTGGGGCTGGAGAAATTGGGGAAACACAGAAACAAGCTAGTACTTCTGTCGCTGGTGGACTACTCCATTTGTATCTTGTTATGCTGCTACCATTAGAGTTGGAGAAAGAGTTAATCCATATGATTATCATTCAACTGTAA

Protein sequence

MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTCLCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL*

Homology

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BLAST of CsaV3_6G019130 vs. NCBI nr
Match: KGN47212.1 (hypothetical protein Csa_016995 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 2.9e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60
           MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC
Sbjct: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60

Query: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 120
           LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL
Sbjct: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 119

[Close]

BLAST of CsaV3_6G019130 vs. NCBI nr
Match: PON63788.1 (Ham1-like protein [Parasponia andersonii])

HSP 1 Score: 62.0 bits (149), Expect = 4.0e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLPRLLLGA 77
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP L +G+
Sbjct: 60 KEKARLAAIQVNGPVLVEDTCLCFNALKGLPVLFVGS 96

[Close]

BLAST of CsaV3_6G019130 vs. NCBI nr
Match: XP_020094355.1 (inosine triphosphate pyrophosphatase [Ananas comosus] >XP_020094356.1 inosine triphosphate pyrophosphatase [Ananas comosus] >OAY64599.1 Inosine triphosphate pyrophosphatase [Ananas comosus])

HSP 1 Score: 61.2 bits (147), Expect = 6.9e-06
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EEF + + T I      L LP  +     I +E ARLAA QVNG VLVEDTCLCFNA
Sbjct: 23 KKLEEFRAILGTSIPFRSLKLDLPELQGEPEEISKEKARLAATQVNGPVLVEDTCLCFNA 82

[Close]

BLAST of CsaV3_6G019130 vs. NCBI nr
Match: RXH78486.1 (hypothetical protein DVH24_002004 [Malus domestica])

HSP 1 Score: 60.8 bits (146), Expect = 9.0e-06
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EE  + + T I      L LP  +     I +E ARLAAIQVNG VLVEDTCLCFNA
Sbjct: 25 KKLEEVRAILGTSIPFNSLKLDLPELQGEPEDISKEKARLAAIQVNGPVLVEDTCLCFNA 84

Query: 72 LKGLPRL 73
          LKGLP L
Sbjct: 85 LKGLPGL 91

[Close]

BLAST of CsaV3_6G019130 vs. NCBI nr
Match: XP_018480055.1 (PREDICTED: inosine triphosphate pyrophosphatase-like [Raphanus sativus])

HSP 1 Score: 60.1 bits (144), Expect = 1.5e-05
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +KFEE  + + + I      L LP  +     I +E ARLAA+QVNG VLVEDTCLCFNA
Sbjct: 22 KKFEEVKAIIGSSIPFKSLKLDLPELQGEPEDISKEKARLAALQVNGPVLVEDTCLCFNA 81

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy Swiss-Prot
Match: B6TNW8 (Inosine triphosphate pyrophosphatase OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.5e-08
Identity = 31/45 (68.89%), Postives = 34/45 (75.56%), Query Frame = 0


Query: 27 LVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          L LP  +    YI +E AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 40 LDLPELQGEPEYISKEKARIAASQVNGPVLVEDTCLCFNALKGLP 84

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy Swiss-Prot
Match: F6HS55 (Inosine triphosphate pyrophosphatase OS=Vitis vinifera OX=29760 GN=VIT_05s0051g00580 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.9e-08
Identity = 27/31 (87.10%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP
Sbjct: 59 KEKARLAAIQVNGPVLVEDTCLCFNALKGLP 89

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy Swiss-Prot
Match: Q8L968 (Inosine triphosphate pyrophosphatase OS=Arabidopsis thaliana OX=3702 GN=At4g13720 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 3.8e-07
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAA+QV+G VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARLAALQVDGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy Swiss-Prot
Match: B8BH95 (Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. indica OX=39946 GN=OsI_33887 PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-07
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 55 KEKARMAASQVNGPVLVEDTCLCFNALKGLP 85

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy Swiss-Prot
Match: Q7XDP2 (Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. japonica OX=39947 GN=Os10g0457500 PE=2 SV=2)

HSP 1 Score: 55.5 bits (132), Expect = 5.0e-07
Identity = 25/31 (80.65%), Postives = 28/31 (90.32%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +AR+AA QVNG VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARMAASQVNGPVLVEDTCLCFNALKGLP 88

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy TrEMBL
Match: A0A0A0KFK7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G206350 PE=3 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.4e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60
           MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC
Sbjct: 1   MCFWSLIQSPDQKFEEFDSKMATRIGLVLPSSRRARRYIEREARLAAIQVNGSVLVEDTC 60

Query: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 120
           LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL
Sbjct: 61  LCFNALKGLPRLLLGAGEIGETQKQASTSVAGGLLHLYLVMLLPLELEKELIHMIIIQL 119

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy TrEMBL
Match: A0A2P5CRV4 (Ham1-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_129440 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 2.0e-06
Identity = 29/37 (78.38%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLPRLLLGA 77
          + +ARLAAIQVNG VLVEDTCLCFNALKGLP L +G+
Sbjct: 60 KEKARLAAIQVNGPVLVEDTCLCFNALKGLPVLFVGS 96

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy TrEMBL
Match: A0A199UIN7 (Inosine triphosphate pyrophosphatase OS=Ananas comosus OX=4615 GN=LOC109714245 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.3e-06
Identity = 37/65 (56.92%), Postives = 42/65 (64.62%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EEF + + T I      L LP  +     I +E ARLAA QVNG VLVEDTCLCFNA
Sbjct: 23 KKLEEFRAILGTSIPFRSLKLDLPELQGEPEEISKEKARLAATQVNGPVLVEDTCLCFNA 82

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy TrEMBL
Match: A0A498I4Q9 (Inosine triphosphate pyrophosphatase OS=Malus domestica OX=3750 GN=DVH24_002004 PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.4e-06
Identity = 38/67 (56.72%), Postives = 43/67 (64.18%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +K EE  + + T I      L LP  +     I +E ARLAAIQVNG VLVEDTCLCFNA
Sbjct: 25 KKLEEVRAILGTSIPFNSLKLDLPELQGEPEDISKEKARLAAIQVNGPVLVEDTCLCFNA 84

Query: 72 LKGLPRL 73
          LKGLP L
Sbjct: 85 LKGLPGL 91

[Close]

BLAST of CsaV3_6G019130 vs. ExPASy TrEMBL
Match: A0A6J0N617 (inosine triphosphate pyrophosphatase-like OS=Raphanus sativus OX=3726 GN=LOC108851136 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 7.4e-06
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 0


Query: 12 QKFEEFDSKMATRI-----GLVLPSSRRARRYIERE-ARLAAIQVNGSVLVEDTCLCFNA 71
          +KFEE  + + + I      L LP  +     I +E ARLAA+QVNG VLVEDTCLCFNA
Sbjct: 22 KKFEEVKAIIGSSIPFKSLKLDLPELQGEPEDISKEKARLAALQVNGPVLVEDTCLCFNA 81

[Close]

BLAST of CsaV3_6G019130 vs. TAIR 10
Match: AT4G13720.1 (Inosine triphosphate pyrophosphatase family protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.7e-08
Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 0


Query: 40 EREARLAAIQVNGSVLVEDTCLCFNALKGLP 71
          + +ARLAA+QV+G VLVEDTCLCFNALKGLP
Sbjct: 58 KEKARLAALQVDGPVLVEDTCLCFNALKGLP 88

The following BLAST results are available for this feature:

BLAST of CsaV3_6G019130 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47212.1	2.9e-57	100.00	hypothetical protein Csa_016995 [Cucumis sativus]	[more]
PON63788.1	4.0e-06	78.38	Ham1-like protein [Parasponia andersonii]	[more]
XP_020094355.1	6.9e-06	56.92	inosine triphosphate pyrophosphatase [Ananas comosus] >XP_020094356.1 inosine tr...	[more]
RXH78486.1	9.0e-06	56.72	hypothetical protein DVH24_002004 [Malus domestica]	[more]
XP_018480055.1	1.5e-05	55.38	PREDICTED: inosine triphosphate pyrophosphatase-like [Raphanus sativus]	[more]

BLAST of CsaV3_6G019130 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B6TNW8	4.5e-08	68.89	Inosine triphosphate pyrophosphatase OS=Zea mays OX=4577 PE=2 SV=1	[more]
F6HS55	5.9e-08	87.10	Inosine triphosphate pyrophosphatase OS=Vitis vinifera OX=29760 GN=VIT_05s0051g0...	[more]
Q8L968	3.8e-07	80.65	Inosine triphosphate pyrophosphatase OS=Arabidopsis thaliana OX=3702 GN=At4g1372...	[more]
B8BH95	5.0e-07	80.65	Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. indica OX=39946 GN=O...	[more]
Q7XDP2	5.0e-07	80.65	Inosine triphosphate pyrophosphatase OS=Oryza sativa subsp. japonica OX=39947 GN...	[more]

BLAST of CsaV3_6G019130 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFK7	1.4e-57	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G206350 PE=3 SV=1	[more]
A0A2P5CRV4	2.0e-06	78.38	Ham1-like protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_129440 PE=3 SV=...	[more]
A0A199UIN7	3.3e-06	56.92	Inosine triphosphate pyrophosphatase OS=Ananas comosus OX=4615 GN=LOC109714245 P...	[more]
A0A498I4Q9	4.4e-06	56.72	Inosine triphosphate pyrophosphatase OS=Malus domestica OX=3750 GN=DVH24_002004 ...	[more]
A0A6J0N617	7.4e-06	55.38	inosine triphosphate pyrophosphatase-like OS=Raphanus sativus OX=3726 GN=LOC1088...	[more]

BLAST of CsaV3_6G019130 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G13720.1	2.7e-08	80.65	Inosine triphosphate pyrophosphatase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002637	Ham1-like protein	PFAM	PF01725	Ham1p_like	coord: 41..71 e-value: 7.7E-5 score: 22.7
IPR029001	Inosine triphosphate pyrophosphatase-like	SUPERFAMILY	52972	ITPase-like	coord: 37..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G019130.1	CsaV3_6G019130.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009143	nucleoside triphosphate catabolic process
molecular_function	GO:0047429	nucleoside-triphosphate diphosphatase activity