CsaV3_6G018640 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G018640
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 13211461 .. 13212202 (+)
RNA-Seq ExpressionCsaV3_6G018640
SyntenyCsaV3_6G018640
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATAACTTTAGTGATGAAGAAGCTGGTGTTGAAAATGAAACCCCAAAGCAGATATGTAGACCACGAGGACCAACTATTATGTTCGATGTCACTCGCATTAGAAGTTTGGGAGAGAAGAAGGTGGTGATGTACAATGAAGACGGAGTACCCATTGGTGAGAATGGAGCAAAGTTGAAGTCTTTCATAGGATCTGCGACACATTATCATGTCCCGATCACATATTCATCGTGGAAAAGTGTGCCGGTAGAGCTGAAAGATAAAATATTCAGTACGGTTGAGGTATATATATAATTTCAATGTGCTTATATTGATAATGTTCATAATGTATACTTTATTAATCACTTTTAAATATTTAGGCCGCATTCGTCATTGATCCCAGATCGAGGAAAAATATTATCCAAACTGCTGGCATTTCGTTTCGTCAGTTTAAGTGTTGGCTAACAACAAAATATATTATGCCACATAAGGATGAACCACAACTCCTACAAGTTCCACCAGAAAAGTATTCATTCATTGATCAACATCATTGGACAGAATGTCTAGATTGTGTGAAACTTTTCAGGTATGTTACTTTCTCAATAACAAATATATTTGTAAAGTTTAGATTGCATGTTACTTTCTCACTAACAATATTTTTGAAAAATAGGAAAAAAGACTTCTCCAACAAGATAGACGATCTAAGAACAAGTATAACCATAGGATTTCGAGGAAGGGTTATGCCAATCTTATCGAGAAAATG

mRNA sequence

ATGGATAACTTTAGTGATGAAGAAGCTGGTGTTGAAAATGAAACCCCAAAGCAGATATGTAGACCACGAGGACCAACTATTATGTTCGATGTCACTCGCATTAGAAGTTTGGGAGAGAAGAAGGTGGTGATGTACAATGAAGACGGAGTACCCATTGGTGAGAATGGAGCAAAGTTGAAGTCTTTCATAGGATCTGCGACACATTATCATGTCCCGATCACATATTCATCGTGGAAAAGTGTGCCGGTAGAGCTGAAAGATAAAATATTCAGTACGGTTGAGGCCGCATTCGTCATTGATCCCAGATCGAGGAAAAATATTATCCAAACTGCTGGCATTTCGTTTCGTCAGTTTAAGTGTTGGCTAACAACAAAATATATTATGCCACATAAGGATGAACCACAACTCCTACAAGTTCCACCAGAAAAGTATTCATTCATTGATCAACATCATTGGACAGAATGTCTAGATTGTGTGAAACTTTTCAGGAAAAAAGACTTCTCCAACAAGATAGACGATCTAAGAACAAGTATAACCATAGGATTTCGAGGAAGGGTTATGCCAATCTTATCGAGAAAATG

Coding sequence (CDS)

ATGGATAACTTTAGTGATGAAGAAGCTGGTGTTGAAAATGAAACCCCAAAGCAGATATGTAGACCACGAGGACCAACTATTATGTTCGATGTCACTCGCATTAGAAGTTTGGGAGAGAAGAAGGTGGTGATGTACAATGAAGACGGAGTACCCATTGGTGAGAATGGAGCAAAGTTGAAGTCTTTCATAGGATCTGCGACACATTATCATGTCCCGATCACATATTCATCGTGGAAAAGTGTGCCGGTAGAGCTGAAAGATAAAATATTCAGTACGGTTGAGGCCGCATTCGTCATTGATCCCAGATCGAGGAAAAATATTATCCAAACTGCTGGCATTTCGTTTCGTCAGTTTAAGTGTTGGCTAACAACAAAATATATTATGCCACATAAGGATGAACCACAACTCCTACAAGTTCCACCAGAAAAGTATTCATTCATTGATCAACATCATTGGACAGAATGTCTAGATTGTGTGAAACTTTTCAGGAAAAAAGACTTCTCCAACAAGATAGACGATCTAAGAACAAGTATAACCATAGGATTTCGAGGAAGGGTTATGCCAATCTTATCGAGAAAATG

Protein sequence

MDNFSDEEAGVENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKLKSFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFKCWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTECLDCVKLFRKKDFSNKIDDLRTSITIGFRGRVMPILSRKX
Homology
BLAST of CsaV3_6G018640 vs. NCBI nr
Match: KAE8646994.1 (hypothetical protein Csa_016979, partial [Cucumis sativus])

HSP 1 Score: 404.8 bits (1039), Expect = 4.1e-109
Identity = 193/193 (100.00%), Postives = 193/193 (100.00%), Query Frame = 0

Query: 1   MDNFSDEEAGVENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKLK 60
           MDNFSDEEAGVENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKLK
Sbjct: 1   MDNFSDEEAGVENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKLK 60

Query: 61  SFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFKC 120
           SFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFKC
Sbjct: 61  SFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFKC 120

Query: 121 WLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTECLDCVKLFRKKDFSNKIDDLRTSITI 180
           WLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTECLDCVKLFRKKDFSNKIDDLRTSITI
Sbjct: 121 WLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTECLDCVKLFRKKDFSNKIDDLRTSITI 180

Query: 181 GFRGRVMPILSRK 194
           GFRGRVMPILSRK
Sbjct: 181 GFRGRVMPILSRK 193

BLAST of CsaV3_6G018640 vs. NCBI nr
Match: KAA0057689.1 (hypothetical protein E6C27_scaffold126G00400 [Cucumis melo var. makuwa] >TYK27474.1 hypothetical protein E5676_scaffold970G00270 [Cucumis melo var. makuwa])

HSP 1 Score: 275.8 bits (704), Expect = 2.9e-70
Identity = 135/184 (73.37%), Postives = 152/184 (82.61%), Query Frame = 0

Query: 3   NFSDEEAGVENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKLKSF 62
           N + E+    NETPK++ + RGPTIMFDVT IRSLG+KKVV YNED  PIGENGAKLKSF
Sbjct: 284 NTTVEDIDTRNETPKKLKQRRGPTIMFDVTHIRSLGDKKVVRYNEDRAPIGENGAKLKSF 343

Query: 63  IGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFKCWL 122
           IGSATHYHV ITY+SWKSVP ELKDKIF+TV+AAFVIDPRSRKN++QTAGISFR FK WL
Sbjct: 344 IGSATHYHVSITYTSWKSVPAELKDKIFTTVDAAFVIDPRSRKNVLQTAGISFRHFKNWL 403

Query: 123 TTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTECLDCVKLFRKKDFSNKIDDLRTSITIGF 182
           TTKYIMPHKDEPQLLQVPPEKY FI+Q+HW E +      RKKD  NKIDD RT+  I  
Sbjct: 404 TTKYIMPHKDEPQLLQVPPEKYFFIEQNHWEEFVRS----RKKDNYNKIDDRRTNTIIES 463

Query: 183 RGRV 187
           +G+V
Sbjct: 464 QGKV 463

BLAST of CsaV3_6G018640 vs. NCBI nr
Match: KAA0060814.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 268.5 bits (685), Expect = 4.6e-68
Identity = 131/160 (81.88%), Postives = 141/160 (88.12%), Query Frame = 0

Query: 1   MDNFSDEEAGV------ENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGE 60
           MDN  +EE GV        ETPK++ R RGPTIMFDVTRIRSLG+KKVV YNEDG PIGE
Sbjct: 1   MDNL-NEEVGVGELNATVEETPKELKRRRGPTIMFDVTRIRSLGDKKVVRYNEDGAPIGE 60

Query: 61  NGAKLKSFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGIS 120
           NGAKLKSFIGSATHYHVPITY SWKSVP ELKDKIF+TVEAAFVIDPRSRKN++QTAGIS
Sbjct: 61  NGAKLKSFIGSATHYHVPITYMSWKSVPAELKDKIFTTVEAAFVIDPRSRKNVLQTAGIS 120

Query: 121 FRQFKCWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTE 155
           FRQFK WLTTKYI+PHKDEPQLLQVPPEKYSFI+Q+HW E
Sbjct: 121 FRQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

BLAST of CsaV3_6G018640 vs. NCBI nr
Match: TYK01338.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-67
Identity = 128/155 (82.58%), Postives = 138/155 (89.03%), Query Frame = 0

Query: 6   DEEAGV------ENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKL 65
           +EE GV        ETPK++ R RGPTIMFDVTRIRSLG+KKVV YNEDG PIGENGAKL
Sbjct: 5   NEEVGVGELNATVEETPKELKRRRGPTIMFDVTRIRSLGDKKVVRYNEDGAPIGENGAKL 64

Query: 66  KSFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFK 125
           KSFIGSATHYHVPITY SWKSVP ELKDKIF+TVEAAFVIDPRSRKN++QTAGISFRQFK
Sbjct: 65  KSFIGSATHYHVPITYMSWKSVPAELKDKIFTTVEAAFVIDPRSRKNVLQTAGISFRQFK 124

Query: 126 CWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTE 155
            WLTTKYI+PHKDEPQLLQVPPEKYSFI+Q+HW E
Sbjct: 125 NWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

BLAST of CsaV3_6G018640 vs. NCBI nr
Match: TYK24336.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa] >TYK24781.1 putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 2.3e-67
Identity = 128/155 (82.58%), Postives = 138/155 (89.03%), Query Frame = 0

Query: 6   DEEAGV------ENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKL 65
           +EE GV        ETPK++ R RGPTIMFDVTRIRSLG+KKVV YNEDG PIGENGAKL
Sbjct: 5   NEEVGVGELNATVEETPKELKRRRGPTIMFDVTRIRSLGDKKVVRYNEDGAPIGENGAKL 64

Query: 66  KSFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFK 125
           KSFIGSATHYHVPITY SWKSVP ELKDKIF+TVEAAFVIDPRSRKN++QTAGISFRQFK
Sbjct: 65  KSFIGSATHYHVPITYMSWKSVPAELKDKIFTTVEAAFVIDPRSRKNVLQTAGISFRQFK 124

Query: 126 CWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTE 155
            WLTTKYI+PHKDEPQLLQVPPEKYSFI+Q+HW E
Sbjct: 125 NWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

BLAST of CsaV3_6G018640 vs. ExPASy TrEMBL
Match: A0A5D3DVE3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold970G00270 PE=4 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 1.4e-70
Identity = 135/184 (73.37%), Postives = 152/184 (82.61%), Query Frame = 0

Query: 3   NFSDEEAGVENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKLKSF 62
           N + E+    NETPK++ + RGPTIMFDVT IRSLG+KKVV YNED  PIGENGAKLKSF
Sbjct: 284 NTTVEDIDTRNETPKKLKQRRGPTIMFDVTHIRSLGDKKVVRYNEDRAPIGENGAKLKSF 343

Query: 63  IGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFKCWL 122
           IGSATHYHV ITY+SWKSVP ELKDKIF+TV+AAFVIDPRSRKN++QTAGISFR FK WL
Sbjct: 344 IGSATHYHVSITYTSWKSVPAELKDKIFTTVDAAFVIDPRSRKNVLQTAGISFRHFKNWL 403

Query: 123 TTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTECLDCVKLFRKKDFSNKIDDLRTSITIGF 182
           TTKYIMPHKDEPQLLQVPPEKY FI+Q+HW E +      RKKD  NKIDD RT+  I  
Sbjct: 404 TTKYIMPHKDEPQLLQVPPEKYFFIEQNHWEEFVRS----RKKDNYNKIDDRRTNTIIES 463

Query: 183 RGRV 187
           +G+V
Sbjct: 464 QGKV 463

BLAST of CsaV3_6G018640 vs. ExPASy TrEMBL
Match: A0A5A7V0G8 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold137G00370 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.2e-68
Identity = 131/160 (81.88%), Postives = 141/160 (88.12%), Query Frame = 0

Query: 1   MDNFSDEEAGV------ENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGE 60
           MDN  +EE GV        ETPK++ R RGPTIMFDVTRIRSLG+KKVV YNEDG PIGE
Sbjct: 1   MDNL-NEEVGVGELNATVEETPKELKRRRGPTIMFDVTRIRSLGDKKVVRYNEDGAPIGE 60

Query: 61  NGAKLKSFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGIS 120
           NGAKLKSFIGSATHYHVPITY SWKSVP ELKDKIF+TVEAAFVIDPRSRKN++QTAGIS
Sbjct: 61  NGAKLKSFIGSATHYHVPITYMSWKSVPAELKDKIFTTVEAAFVIDPRSRKNVLQTAGIS 120

Query: 121 FRQFKCWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTE 155
           FRQFK WLTTKYI+PHKDEPQLLQVPPEKYSFI+Q+HW E
Sbjct: 121 FRQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

BLAST of CsaV3_6G018640 vs. ExPASy TrEMBL
Match: A0A5D3DME5 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00220 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 128/155 (82.58%), Postives = 138/155 (89.03%), Query Frame = 0

Query: 6   DEEAGV------ENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKL 65
           +EE GV        ETPK++ R RGPTIMFDVTRIRSLG+KKVV YNEDG PIGENGAKL
Sbjct: 5   NEEVGVGELNATVEETPKELKRRRGPTIMFDVTRIRSLGDKKVVRYNEDGAPIGENGAKL 64

Query: 66  KSFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFK 125
           KSFIGSATHYHVPITY SWKSVP ELKDKIF+TVEAAFVIDPRSRKN++QTAGISFRQFK
Sbjct: 65  KSFIGSATHYHVPITYMSWKSVPAELKDKIFTTVEAAFVIDPRSRKNVLQTAGISFRQFK 124

Query: 126 CWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTE 155
            WLTTKYI+PHKDEPQLLQVPPEKYSFI+Q+HW E
Sbjct: 125 NWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

BLAST of CsaV3_6G018640 vs. ExPASy TrEMBL
Match: A0A5D3C8G8 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00550 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 128/155 (82.58%), Postives = 138/155 (89.03%), Query Frame = 0

Query: 6   DEEAGV------ENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKL 65
           +EE GV        ETPK++ R RGPTIMFDVTRIRSLG+KKVV YNEDG PIGENGAKL
Sbjct: 5   NEEVGVGELNATVEETPKELKRRRGPTIMFDVTRIRSLGDKKVVRYNEDGAPIGENGAKL 64

Query: 66  KSFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFK 125
           KSFIGSATHYHVPITY SWKSVP ELKDKIF+TVEAAFVIDPRSRKN++QTAGISFRQFK
Sbjct: 65  KSFIGSATHYHVPITYMSWKSVPAELKDKIFTTVEAAFVIDPRSRKNVLQTAGISFRQFK 124

Query: 126 CWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTE 155
            WLTTKYI+PHKDEPQLLQVPPEKYSFI+Q+HW E
Sbjct: 125 NWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

BLAST of CsaV3_6G018640 vs. ExPASy TrEMBL
Match: A0A5D3BQQ2 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold29G00170 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.1e-67
Identity = 128/155 (82.58%), Postives = 138/155 (89.03%), Query Frame = 0

Query: 6   DEEAGV------ENETPKQICRPRGPTIMFDVTRIRSLGEKKVVMYNEDGVPIGENGAKL 65
           +EE GV        ETPK++ R RGPTIMFDVTRIRSLG+KKVV YNEDG PIGENGAKL
Sbjct: 5   NEEVGVGELNATVEETPKELKRRRGPTIMFDVTRIRSLGDKKVVRYNEDGAPIGENGAKL 64

Query: 66  KSFIGSATHYHVPITYSSWKSVPVELKDKIFSTVEAAFVIDPRSRKNIIQTAGISFRQFK 125
           KSFIGSATHYHVPITY SWKSVP ELKDKIF+TVEAAFVIDPRSRKN++QTAGISFRQFK
Sbjct: 65  KSFIGSATHYHVPITYMSWKSVPAELKDKIFTTVEAAFVIDPRSRKNVLQTAGISFRQFK 124

Query: 126 CWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWTE 155
            WLTTKYI+PHKDEPQLLQVPPEKYSFI+Q+HW E
Sbjct: 125 NWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646994.14.1e-109100.00hypothetical protein Csa_016979, partial [Cucumis sativus][more]
KAA0057689.12.9e-7073.37hypothetical protein E6C27_scaffold126G00400 [Cucumis melo var. makuwa] >TYK2747... [more]
KAA0060814.14.6e-6881.88putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
TYK01338.12.3e-6782.58putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa][more]
TYK24336.12.3e-6782.58putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa] >TYK247... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DVE31.4e-7073.37Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7V0G82.2e-6881.88Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3DME51.1e-6782.58Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3C8G81.1e-6782.58Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BQQ21.1e-6782.58Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33144OS10G0409366 PROTEIN-RELATEDcoord: 16..147
NoneNo IPR availablePANTHERPTHR33144:SF22PLANT TRANSPOSASE (PTTA/EN/SPM FAMILY)coord: 16..147

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G018640.1CsaV3_6G018640.1mRNA