CsaV3_6G018600 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGAACCTGAACATGCCGATGGCACAAATGGGGAACATGCAAATGAGTCAAATGGGATCCATTCCAGCCGTCCAAGGTCTCCCGGCGCCCGCCATGAACGGCGGTGGACCCGGCAGCGCGTATTTTCAAGGAGCTCCCGGACCAGCGGAGGCAATGGGCGGCAACCCATACCAACAGCAACAACAATACATGGCAGCAATGAATCACCAACGCGCCGCCATGGCAAACCAAGCAATGATGTACGCGCGGCCACCACCAGCCGTGAACTACCTGCCGCCGTATCCGTATCCATATCCTCCGCCGCCACCTGCCGGCGATAATTACACCCACTTTTTCAGCGATGAAAACACTTCAAGTTGCAATGTAATGTGAAAAAAGAAAAAAAAAAAGGAACAAAAGAAAAAAAAAGAATCCAACCAGAATTTGAAAATGATCTTAGACACCATAATTAATTAGAGCTCTATTATTATGGTGATTAAATTCTGGTTTTCATGACAGATTAAAAATGTTCAGTTTATAGTTTTTTTTATTCAGGAGAGTTTAAAAAAAAAAAGAAAAAAAAAAAAGAAAGGCCCCATCCCCCCAAAAGGAAAAAAAAAAAATTAGAAGTTTGATGATGCTCTTATCATATATATACTTTGGGAATGTTTTTCTTTTCTTTTCAGTAAAAATCTCTCCATTTAATTCTCTTTATCTTTTTGCTCAAGTGTATGGTATTTGTAATTTGGTAGAGGCTGGTTTTACAATTCAATTAAAAGTGCCCTCATAAAATGGGTATATGGTGTGTTCCAAATTGGGATTTACAATCATTATTATTATTTGGTTATATTGAGAAGTCTTCATGTGCTTTTGCTTCATCTCTTTTGTAGATTTCCCAAAAATTAAATACCTTCACTGTTCTCTTCAATGGCCATGGAGGTTTGTGA ATGAACCTGAACATGCCGATGGCACAAATGGGGAACATGCAAATGAGTCAAATGGGATCCATTCCAGCCGTCCAAGGTCTCCCGGCGCCCGCCATGAACGGCGGTGGACCCGGCAGCGCGTATTTTCAAGGAGCTCCCGGACCAGCGGAGGCAATGGGCGGCAACCCATACCAACAGCAACAACAATACATGGCAGCAATGAATCACCAACGCGCCGCCATGGCAAACCAAGCAATGATGTACGCGCGGCCACCACCAGCCGTGAACTACCTGCCGCCGTATCCGTATCCATATCCTCCGCCGCCACCTGCCGGCGATAATTACACCCACTTTTTCAGCGATGAAAACACTTCAAGTTGCAATATTTCCCAAAAATTAAATACCTTCACTGTTCTCTTCAATGGCCATGGAGGTTTGTGA ATGAACCTGAACATGCCGATGGCACAAATGGGGAACATGCAAATGAGTCAAATGGGATCCATTCCAGCCGTCCAAGGTCTCCCGGCGCCCGCCATGAACGGCGGTGGACCCGGCAGCGCGTATTTTCAAGGAGCTCCCGGACCAGCGGAGGCAATGGGCGGCAACCCATACCAACAGCAACAACAATACATGGCAGCAATGAATCACCAACGCGCCGCCATGGCAAACCAAGCAATGATGTACGCGCGGCCACCACCAGCCGTGAACTACCTGCCGCCGTATCCGTATCCATATCCTCCGCCGCCACCTGCCGGCGATAATTACACCCACTTTTTCAGCGATGAAAACACTTCAAGTTGCAATATTTCCCAAAAATTAAATACCTTCACTGTTCTCTTCAATGGCCATGGAGGTTTGTGA MNLNMPMAQMGNMQMSQMGSIPAVQGLPAPAMNGGGPGSAYFQGAPGPAEAMGGNPYQQQQQYMAAMNHQRAAMANQAMMYARPPPAVNYLPPYPYPYPPPPPAGDNYTHFFSDENTSSCNISQKLNTFTVLFNGHGGL* Homology
BLAST of CsaV3_6G018600 vs. NCBI nr
Match: KAE8646993.1 (hypothetical protein Csa_017011 [Cucumis sativus]) HSP 1 Score: 278.1 bits (710), Expect = 4.2e-71 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. NCBI nr
Match: KAA0033424.1 (RNA-binding protein cabeza-like [Cucumis melo var. makuwa]) HSP 1 Score: 271.9 bits (694), Expect = 3.0e-69 Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. NCBI nr
Match: XP_011657200.2 (LOW QUALITY PROTEIN: heavy metal-associated isoprenylated plant protein 33 [Cucumis sativus]) HSP 1 Score: 242.3 bits (617), Expect = 2.5e-60 Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. NCBI nr
Match: XP_008458557.1 (PREDICTED: RNA-binding protein cabeza-like [Cucumis melo] >XP_016902304.1 PREDICTED: RNA-binding protein cabeza-like [Cucumis melo]) HSP 1 Score: 236.1 bits (601), Expect = 1.8e-58 Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. NCBI nr
Match: KAG7013585.1 (Heavy metal-associated isoprenylated plant protein 33 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 212.6 bits (540), Expect = 2.2e-51 Identity = 107/122 (87.70%), Postives = 109/122 (89.34%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. ExPASy Swiss-Prot
Match: Q9M8K5 (Heavy metal-associated isoprenylated plant protein 32 OS=Arabidopsis thaliana OX=3702 GN=HIPP32 PE=2 SV=1) HSP 1 Score: 104.4 bits (259), Expect = 1.1e-21 Identity = 75/138 (54.35%), Postives = 87/138 (63.04%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. ExPASy Swiss-Prot
Match: F4JZL7 (Heavy metal-associated isoprenylated plant protein 33 OS=Arabidopsis thaliana OX=3702 GN=HIPP33 PE=2 SV=1) HSP 1 Score: 99.8 bits (247), Expect = 2.7e-20 Identity = 72/150 (48.00%), Postives = 86/150 (57.33%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. ExPASy Swiss-Prot
Match: Q0WV37 (Heavy metal-associated isoprenylated plant protein 34 OS=Arabidopsis thaliana OX=3702 GN=HIPP34 PE=2 SV=1) HSP 1 Score: 69.3 bits (168), Expect = 3.9e-11 Identity = 58/130 (44.62%), Postives = 66/130 (50.77%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. ExPASy TrEMBL
Match: A0A5A7SQF7 (RNA-binding protein cabeza-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold111G00760 PE=4 SV=1) HSP 1 Score: 271.9 bits (694), Expect = 1.5e-69 Identity = 136/139 (97.84%), Postives = 137/139 (98.56%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. ExPASy TrEMBL
Match: A0A0A0KEJ8 (HMA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G237620 PE=4 SV=1) HSP 1 Score: 242.3 bits (617), Expect = 1.2e-60 Identity = 121/122 (99.18%), Postives = 122/122 (100.00%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. ExPASy TrEMBL
Match: A0A1S3C7N5 (RNA-binding protein cabeza-like OS=Cucumis melo OX=3656 GN=LOC103497926 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 8.8e-59 Identity = 118/122 (96.72%), Postives = 120/122 (98.36%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. ExPASy TrEMBL
Match: A0A6J1H6P6 (heavy metal-associated isoprenylated plant protein 33-like OS=Cucurbita moschata OX=3662 GN=LOC111460115 PE=4 SV=1) HSP 1 Score: 212.6 bits (540), Expect = 1.0e-51 Identity = 107/122 (87.70%), Postives = 109/122 (89.34%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. ExPASy TrEMBL
Match: A0A6J1L4A9 (heavy metal-associated isoprenylated plant protein 33-like OS=Cucurbita maxima OX=3661 GN=LOC111499013 PE=4 SV=1) HSP 1 Score: 196.8 bits (499), Expect = 5.9e-47 Identity = 102/122 (83.61%), Postives = 104/122 (85.25%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. TAIR 10
Match: AT3G06130.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 104.4 bits (259), Expect = 7.7e-23 Identity = 75/138 (54.35%), Postives = 87/138 (63.04%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. TAIR 10
Match: AT5G19090.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 99.8 bits (247), Expect = 1.9e-21 Identity = 72/150 (48.00%), Postives = 86/150 (57.33%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. TAIR 10
Match: AT5G19090.2 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 99.8 bits (247), Expect = 1.9e-21 Identity = 72/150 (48.00%), Postives = 86/150 (57.33%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. TAIR 10
Match: AT5G19090.3 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 99.8 bits (247), Expect = 1.9e-21 Identity = 72/150 (48.00%), Postives = 86/150 (57.33%), Query Frame = 0
BLAST of CsaV3_6G018600 vs. TAIR 10
Match: AT3G05220.1 (Heavy metal transport/detoxification superfamily protein ) HSP 1 Score: 69.3 bits (168), Expect = 2.7e-12 Identity = 58/130 (44.62%), Postives = 66/130 (50.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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