CsaV3_6G018480 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G018480
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 13053848 .. 13054048 (+)
RNA-Seq Expression	CsaV3_6G018480
Synteny	CsaV3_6G018480

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGAACGAACGGTGGAGAGGGGAAGATATCCAAGCTGACAAACGACGAAGAGAAGGAGATCTGAGAAGACGAACGACCGACAAAAAGGGAGTAGATCTAATTAGACGAAGGCGAAAAGGGAGAAGATATGAGAAGACGAACGGTCAGCAAAAAGGAATGAGATTTAAGAAGACGAACGACGAAGAGGAAGAGATCTGA

mRNA sequence

ATGAGGAACGAACGGTGGAGAGGGGAAGATATCCAAGCTGACAAACGACGAAGAGAAGGAGATCTGAGAAGACGAACGACCGACAAAAAGGGAGTAGATCTAATTAGACGAAGGCGAAAAGGGAGAAGATATGAGAAGACGAACGGTCAGCAAAAAGGAATGAGATTTAAGAAGACGAACGACGAAGAGGAAGAGATCTGA

Coding sequence (CDS)

ATGAGGAACGAACGGTGGAGAGGGGAAGATATCCAAGCTGACAAACGACGAAGAGAAGGAGATCTGAGAAGACGAACGACCGACAAAAAGGGAGTAGATCTAATTAGACGAAGGCGAAAAGGGAGAAGATATGAGAAGACGAACGGTCAGCAAAAAGGAATGAGATTTAAGAAGACGAACGACGAAGAGGAAGAGATCTGA

Protein sequence

MRNERWRGEDIQADKRRREGDLRRRTTDKKGVDLIRRRRKGRRYEKTNGQQKGMRFKKTNDEEEEI*

Homology

[Close]

BLAST of CsaV3_6G018480 vs. NCBI nr
Match: KGN47272.1 (hypothetical protein Csa_017027 [Cucumis sativus])

HSP 1 Score: 124.8 bits (312), Expect = 2.8e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MRNERWRGEDIQADKRRREGDLRRRTTDKKGVDLIRRRRKGRRYEKTNGQQKGMRFKKTN 60
          MRNERWRGEDIQADKRRREGDLRRRTTDKKGVDLIRRRRKGRRYEKTNGQQKGMRFKKTN
Sbjct: 1  MRNERWRGEDIQADKRRREGDLRRRTTDKKGVDLIRRRRKGRRYEKTNGQQKGMRFKKTN 60

Query: 61 DEEEEI 67
          DEEEEI
Sbjct: 61 DEEEEI 66

[Close]

BLAST of CsaV3_6G018480 vs. ExPASy TrEMBL
Match: A0A0A0KFS3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G240200 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 1.4e-25
Identity = 66/66 (100.00%), Postives = 66/66 (100.00%), Query Frame = 0


Query: 1  MRNERWRGEDIQADKRRREGDLRRRTTDKKGVDLIRRRRKGRRYEKTNGQQKGMRFKKTN 60
          MRNERWRGEDIQADKRRREGDLRRRTTDKKGVDLIRRRRKGRRYEKTNGQQKGMRFKKTN
Sbjct: 1  MRNERWRGEDIQADKRRREGDLRRRTTDKKGVDLIRRRRKGRRYEKTNGQQKGMRFKKTN 60

Query: 61 DEEEEI 67
          DEEEEI
Sbjct: 61 DEEEEI 66

The following BLAST results are available for this feature:

BLAST of CsaV3_6G018480 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47272.1	2.8e-25	100.00	hypothetical protein Csa_017027 [Cucumis sativus]	[more]

BLAST of CsaV3_6G018480 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G018480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFS3	1.4e-25	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G240200 PE=4 SV=1	[more]

BLAST of CsaV3_6G018480 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..66
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..66

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G018480.1	CsaV3_6G018480.1	mRNA