CsaV3_6G016600 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G016600
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	transcription initiation factor IIA subunit 1
Location	chr6: 12430458 .. 12435771 (+)
RNA-Seq Expression	CsaV3_6G016600
Synteny	CsaV3_6G016600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACTTCCACAAGCTCTATCTACATCAATGTCATCGAAGATGTTATCAACAAGCTTCGTGACGAGTTTGTTGATAATGGTCCTGGAGAAGATGTTCTCAAGGAGCTTCAAGGAGTAATTCTTGATCCCCAATCTTGAAATTTTTTTGTTTCTTTTGTTTCGTTTATACTATTATCTTCTCTAGTGAATTCAAATGTTTTCTTTTTTTAATCTGTTTGAAGGATTCGATTGAATTTTTTCGGTGATTACTTTCTGGGTTTGATCCGATTCTTTCTAGGGTTTTGAGGCTTTGAAGCTAATTTAAGCTGTGTGGTTGGGCTGATTGTCTTCTTTGTCGGAACTTTTTAGATGTGGGAGGCGAAGATGATGCAAGCGGGTGCTGTGACTGGTCCTATAGAGAGGTCTGCACCATCTAAGCCTACACCCGGAGGTCCGATAACTCCGGTTCACGATCTTAATGTTCCGTATGAGGGTACTGAAGAGTACGAAACTCCCACGGCTGATTTACTCTTTCCACCGGTGATTACTTCTCTGTCCCATCTACTAATTGTTTTCCGAAGTTCGTAATTAATAATTGAAGGGATTTTGGTAAATTGTAGACGCCACTACAGACTCCAATTCAAACCCTTTACCGGGAACTGCTGACAACGCGATGTATAATGTTCCTACTGGACCCAGCGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCCACCACTCCTGGGGGTAGCGGTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACCCCATATATGGTAATTGTTGTTTGACTTTGACGTCACTTCTAATCTTTTACATTTGTCTTATTCCCTGCCGTTTACCCACTTCATACTGTCGTGATTGCATCATTTTTTTTTTCACATTTTGTTCCTTTGATAAAGAGGGAGTGTTGGTTTTTAATTTGATTTAAAGTGGATTAGTGGCATTGATATGGTTTTTACCATAAAAATTCTGAAGTATGTTGTAGATAGTTGAACATTCCATTATCTGGGGTTTTGATAGACGTCTACATTCTTCTTTCAGCAACCACCCTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGGTGAGTCTAGTGTTGAAGTAGTGGAAAGCTTCACAACAATAATTCTGTAGTAATTTATATTGATTGTATTTTGTAGCCTACGTGGAGGGGCGTGAGGAAGCAGCAGACAGGGGAGCTGCTGGCGCTCATCCATCCCTTACACAGGTAATCTCTTTCTTAATTCATGCTTTCATCATGAAAAAATTTGTTCTTGGAGGCTTGATGCAACACCAAAACTGCAACATGAATTTCATCTGCTTCTGATTTTGAATTACTCTACTCCTCTCTGCTATGTATCTATTTGCGCAAAAACTTTGGTAACTTCATTATGATGTTTTAAATTTTGGAAACAATTCTCAGGACTTTTTCATGATGAACTCGGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAGTACCAAGCTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTGCCAACAGTGTTTTTGAGATTGAGGTTTGGTTTTCTTACCTGTCCTTTGAGCCTTGGACTCTCTTGTCAATTTTCTTGCACATAATTTCACGTCATAGCATATAATTTTTATTATTTTGTCTCTCATTCCAAGTAAAGCAAGGGTTAAAGAGTAATTACAAAAAAGGCTTCTCCGCTGAAGCCAACTGAGAGATATTGTACCTAACAAGGGCCCAAATGTCACTATGAGACCTCTCAAGGCCTTAAAATTTTTTGTTGTTTCTCTCTCCTTGAAGGACCTACACAATAATGCACACCCTGGTTTGTTACAAAACCTTATATTCTCATGAAAGATGAGAGGGAACTCCTTGATCATCTCTCTGCAACCCTATGTCTAACCAAGCATAATCTGGAACTCTTCAAAGAAACAACTCCAAATTACATGACCTAGATCACAATTTTGATATGATCAAAATTCTCTGCCACAAGACAATGACTTTATTCGGTATTTTCATCTTCTACTACAAGACAATGACTTAATTCATGGCCACTTGAGGGTGAGGATTGACCAAACAAAGGAAATTTTTTTGTAAGACATACCTTTGGATGGAGTAGAGGACTCCAAATATGAACATCCCTTCTCCCCAAGATTCAACTGAACTTCACAATCAGAGAAAGAAAGGCAATGATTCCGTTGTTGTCCTCTAGTTTTCTTCTCAGATAGAGGACGGTGGAACCCCTTGAGAGGTCAAATTTCAGTTCCATAGTCTTGTTTGACTGCAAGTTGTGGAATTAGTTATAGAATCAATAGTAAAAGTGTCATGTACACAATTGTTTTTCCTGGATGGTAGTAAAAGCGTCATGTTCCCAAGGGGTGGATGCTCATAATTGTTTTACCTGGATGATTCTCATGTACATGATATAGAAAGATGTAACAACACACGACCTTACACATGGAGCCATGCTACCTCATAACAAGCTAAGGAGTGTTCTAGTTTCCCTCAATTTAAACACATAATATTTTATGGGTTAAGTGTACATAATATGAAATTAATATTTGACATGGAAACTTCAGATATTCTTTTATTGCTATAAGAAACCGGACGATATCTCAAAATGAATCCCACAATGGAGGGGAAATTGGAGAGCGGCATTTCACATTCAAGCTCAATTATACATGCATCTCTCACTTTGTAGATTGAAAAATACCAGACTGTTTGAGAAGCTTAGTCTTTAGTTTACAGCTCATTTTGTCCAGTGCCCTCAACAATTGCCAATAAATGTGTTTATACTCATTCTCAGTGTGGGGTTCCTCTGCACAAACTTCATGCCATCGACTCATTTTCACATATCTAGCCAACAGATTGACTACCCCTTTGATTACCAGCTTGCTTCTGATGCCTCACGTGTGTAATGGGAATTGGAAAGATTGGTATATGTCTATAAGAGAGAGAGATAGAAATTTTAGATCTGTAATATTCTTGACCGTAAATTCAGGTGGCTAGACTTGGCTCTGTGAGGCTACAAGATAATCTGGAATGGTAAGTTCAAAGGATGTGCATTATGGGTTGAGCTAGAAATGGTTATATGATTGATAGTAATTTACTAGTAGAACAATTAGTGTTGCCATTTGATTGGCTAGAGGTCAAGCAACTCCTCCTAGGTGTTTGTTTTAGAGAAACCTTTTTTTAAAGGCTACACTGTTGATAGTTGGTGGTATTTGGATCTTCAGTCATATTCACAATGAGGTTGTCTGGGCATTTGGATCTTCAGTCATATTCAAAACGAGGTTGTCTATCTTTCTTGCATGAGACCTCCATTCCCTACCCCTTCAACCAGAAGTTATGAGTAGCATGGACACAGATTAGTTTCTAAAAATCTAGGATGGGACGGCAAGGAACAGGTTTATATATATATATATATATATTTATTTATTTATTTGTGAACTCATACTAAAAATTTGTTTTAATTTATTATGGTTATGCTTAATACATCAACCAACTAATCGATCTTTCTAGAAACCAACTTTTAATAAGATGATGTCCTGAGGAGGAGATTTGGAATACCATTAGGCTCAATAGCCCTTTATAGGTTTGTCTCTAAGGAGTTTGTTTGTTTTGTCGTTACCATTTTATTGTTGTTCTTTTGGATTCATGATAGTTAGTGGAACTTTTTTTTAAAATAAATAAATAAATTATTAATTATCGTTATTATTTTTAAGAGCATTTCATATGATTTAATGAAATTAAAGTTTGGCTTCTTTTTAAAAAACTTCCATTAAGAAGATGAAAAATCAAAATACAATGGGTTCAATTGAAGCAAGGGGAAACTGGCAACACAAGGTGCTCCAAAATTCATGTAACCAAAAAGTCACGTCCTAAATACCCTCTCAAGAACTCTCTCTTTTGAGGAACACTTTCTTTTCCTTTCCAGCTTGGTGAAGCACAAAATAACCAAAATTCGCTGCCAAGGAATCCCTCACCTGGAATGGGGATACACAACAGCCTGTTCTAATGCCTCACAAATGTTTGAATTCTGTGCAAAGACCGAACTTTTATCAAAATTTTAAATGATTGATCATCTTAAAAGAAAAAGTAAATTTGAAGTCAAATAATGCTTAGGCCTTGATTAATACTTTTCTTATTTGTCACGATGCATTTATTTTTCTGTTTTCATTCATGCTAATTGTATTTATTTCCTATATTTGCTGCTGACACTTCTTAGGTTGCAAATATTCGCTTGAGCTTTCTATTGGTGGTTTATGACTAAATAGAATTCATGGGATTACATTTTACCGAATGCTTTCAGTTTATTGTGATCAGTCTTTGACACTCCTTAGTGGTGTGCTTTTGCAGATTAGTGGATGCAATTCTTCTGATGGAAGGCCAGGCGCTATCACTTCTGCAAAGAGTGCAACGTCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCTACACCTAACGTTAGCTCTCTCTCTTTTCTTCCCTTAAAGTTATAGAATCTGCTATTGTTAATACAAGGAATATTTATGTAATAGTAATAGAAATTTTATACTTTTCACCCATCTTTTTACTTGTTTTGGTTTTGCAAGGTGGGTGCCTATTCTTCAGAAGGTTACTTGTCTGCCACTGTTTTTTGATTATCCTTTCATCTTTTTGTAGAAGTCAGGCATCCGTTCCATGTCTTCTTATAAGGATGTCCGTAGTCATAGAATGTTGTTTGATAGACAAAGCCTCGTGGAGCTAGGTACAAGGCACAAACTTATCATGGACGTCATGAAAGCAGGGATTGTTTGCTCGGAAAAATTAGAACCTTCCTCAATGAAAAAAATTATCACTATCGAGTTACACAGTATCGTAGAAACAATTAGGCACACACAAAATAATGTTTAAAATGTCAGCTGTACGATACAAATGTGTTTAACCAAGAATTTTTGTATGTGATTTCCTGGCTTCCTTCTAATGGTTAATACTAGAGCTCATGAGGTGTTTGGCTTTTGTTTTTGATGGAAGACAGAAGATCATTTGAATAAGTCGCAAGATTCTGTGTTGGCTAAAATAACAAGCATATGTCAGTGTCCTCCCTCTTTGTAATATCTCAATTTCTTTCAGGACTCACAATCCCTCAACCAAGCAACCCATGAATATCATGCTCCAATCCGATACGAACACCACATGCTCACTAACACAACAGTCCTCTCTGTAATATAAAAAATGATACCGACACCATCATAGCTACATGAAA

mRNA sequence

ATGGCGACTTCCACAAGCTCTATCTACATCAATGTCATCGAAGATGTTATCAACAAGCTTCGTGACGAGTTTGTTGATAATGGTCCTGGAGAAGATGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAGATGATGCAAGCGGGTGCTGTGACTGGTCCTATAGAGAGGTCTGCACCATCTAAGCCTACACCCGGAGGTCCGATAACTCCGGTTCACGATCTTAATGTTCCGTATGAGGGTACTGAAGAGTACGAAACTCCCACGGCTGATTTACTCTTTCCACCGGTGATTACTTCTCTGTCCCATCTACTAATTGTTTTCCGAAACGCCACTACAGACTCCAATTCAAACCCTTTACCGGGAACTGCTGACAACGCGATGTATAATGTTCCTACTGGACCCAGCGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCCACCACTCCTGGGGGTAGCGGTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACCCCATATATGCAACCACCCTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTACGTGGAGGGGCGTGAGGAAGCAGCAGACAGGGGAGCTGCTGGCGCTCATCCATCCCTTACACAGGACTTTTTCATGATGAACTCGGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAGTACCAAGCTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTGCCAACAGTGTTTTTGAGATTGAGATTAGTGGATGCAATTCTTCTGATGGAAGGCCAGGCGCTATCACTTCTGCAAAGAGTGCAACGTCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCTACACCTAACAAGTCAGGCATCCGTTCCATGTCTTCTTATAAGGATGTCCGTAGTCATAGAATGTTGTTTGATAGACAAAGCCTCGTGGAGCTAGGTACAAGGCACAAACTTATCATGGACGTCATGAAAGCAGGGATTGTTTGCTCGGAAAAATTAGAACCTTCCTCAATGAAAAAAATTATCACTATCGAGTTACACAGTATCGTAGAAACAATTAGGCACACACAAAATAATGTTTAA

Coding sequence (CDS)

ATGGCGACTTCCACAAGCTCTATCTACATCAATGTCATCGAAGATGTTATCAACAAGCTTCGTGACGAGTTTGTTGATAATGGTCCTGGAGAAGATGTTCTCAAGGAGCTTCAAGGAATGTGGGAGGCGAAGATGATGCAAGCGGGTGCTGTGACTGGTCCTATAGAGAGGTCTGCACCATCTAAGCCTACACCCGGAGGTCCGATAACTCCGGTTCACGATCTTAATGTTCCGTATGAGGGTACTGAAGAGTACGAAACTCCCACGGCTGATTTACTCTTTCCACCGGTGATTACTTCTCTGTCCCATCTACTAATTGTTTTCCGAAACGCCACTACAGACTCCAATTCAAACCCTTTACCGGGAACTGCTGACAACGCGATGTATAATGTTCCTACTGGACCCAGCGACCACTCTGCATCTGGAACTGATGCTTCTCCAGCTGCCACCACTCCTGGGGGTAGCGGTAATAATAATGTTGAGGTCAGATCTGGAAGGCCAACCCCATATATGCAACCACCCTCTTGGATGGGTCAAAGAACTCCTGTAGACGTTAATATTGCCTACGTGGAGGGGCGTGAGGAAGCAGCAGACAGGGGAGCTGCTGGCGCTCATCCATCCCTTACACAGGACTTTTTCATGATGAACTCGGGGAAGCGTAAGCGTGATGATTTTGCTTCCCAGTACCAAGCTAATGGGTTTATACCACAGCAAGATGGAGCTGGAGATGCTGCCAACAGTGTTTTTGAGATTGAGATTAGTGGATGCAATTCTTCTGATGGAAGGCCAGGCGCTATCACTTCTGCAAAGAGTGCAACGTCATCACATATTGAAAGATCATTATTGAAGATTCCACAACTTGATGGACCAATGCCTGATCCTTATGATGATGTGCTTTCTACACCTAACAAGTCAGGCATCCGTTCCATGTCTTCTTATAAGGATGTCCGTAGTCATAGAATGTTGTTTGATAGACAAAGCCTCGTGGAGCTAGGTACAAGGCACAAACTTATCATGGACGTCATGAAAGCAGGGATTGTTTGCTCGGAAAAATTAGAACCTTCCTCAATGAAAAAAATTATCACTATCGAGTTACACAGTATCGTAGAAACAATTAGGCACACACAAAATAATGTTTAA

Protein sequence

MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPLPGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQRTPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDGAGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLSTPNKSGIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIVCSEKLEPSSMKKIITIELHSIVETIRHTQNNV*

Homology

[Close]

BLAST of CsaV3_6G016600 vs. NCBI nr
Match: KGN47152.2 (hypothetical protein Csa_020606 [Cucumis sativus])

HSP 1 Score: 749.6 bits (1934), Expect = 1.3e-212
Identity = 379/379 (100.00%), Postives = 379/379 (100.00%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
           TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG
Sbjct: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS
Sbjct: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300

Query: 301 TPNKSGIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIVCSEKLEPSSMKKI 360
           TPNKSGIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIVCSEKLEPSSMKKI
Sbjct: 301 TPNKSGIRSMSSYKDVRSHRMLFDRQSLVELGTRHKLIMDVMKAGIVCSEKLEPSSMKKI 360

Query: 361 ITIELHSIVETIRHTQNNV 380
           ITIELHSIVETIRHTQNNV
Sbjct: 361 ITIELHSIVETIRHTQNNV 379

[Close]

BLAST of CsaV3_6G016600 vs. NCBI nr
Match: XP_004143132.2 (LOW QUALITY PROTEIN: transcription initiation factor IIA large subunit [Cucumis sativus])

HSP 1 Score: 554.7 bits (1428), Expect = 6.3e-154
Identity = 284/303 (93.73%), Postives = 285/303 (94.06%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP  T L   +            NPL
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP--TPLQTPI-----------XNPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
           TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG
Sbjct: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS
Sbjct: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 290

Query: 301 TPN 304
           TPN
Sbjct: 301 TPN 290

[Close]

BLAST of CsaV3_6G016600 vs. NCBI nr
Match: KAE8645883.1 (hypothetical protein Csa_017710 [Cucumis sativus])

HSP 1 Score: 550.8 bits (1418), Expect = 9.1e-153
Identity = 307/414 (74.15%), Postives = 308/414 (74.40%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYE                             +ATTDSNSNPL
Sbjct: 61  SKPTPGGPITPVHDLNVPYE-----------------------------DATTDSNSNPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYM-------QP 180
           PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYM       QP
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMTSTFFFQQP 180

Query: 181 PSWMGQRTPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANG 240
           PSWMGQRTPVDVNIAYVEGREEAADRGAAGAHPSLTQ         RKRDDFASQYQANG
Sbjct: 181 PSWMGQRTPVDVNIAYVEGREEAADRGAAGAHPSLTQ---------RKRDDFASQYQANG 240

Query: 241 FIPQQDGAGDAANSVFEIE----------------------------------------- 300
           FIPQQDGAGDAANSVFEIE                                         
Sbjct: 241 FIPQQDGAGDAANSVFEIEVARLGSVRLQDNLECHIHNEVVWAFGSSVIFKTRIHGITFY 300

Query: 301 --------------------ISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMP 347
                               ISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMP
Sbjct: 301 RMLSVYCDQSLTLLSGVLLQISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMP 360

[Close]

BLAST of CsaV3_6G016600 vs. NCBI nr
Match: XP_031745118.1 (LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1-like [Cucumis sativus])

HSP 1 Score: 550.4 bits (1417), Expect = 1.2e-152
Identity = 282/303 (93.07%), Postives = 283/303 (93.40%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP  T L   +             PL
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP--TPLQTPI-----------QXPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
           TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMN GKRKRDDFASQYQANGFIPQQDG
Sbjct: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNXGKRKRDDFASQYQANGFIPQQDG 240

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS
Sbjct: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 290

Query: 301 TPN 304
           TPN
Sbjct: 301 TPN 290

[Close]

BLAST of CsaV3_6G016600 vs. NCBI nr
Match: XP_008464085.1 (PREDICTED: transcription initiation factor IIA subunit 1 [Cucumis melo])

HSP 1 Score: 540.4 bits (1391), Expect = 1.2e-149
Identity = 279/303 (92.08%), Postives = 281/303 (92.74%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP  T L   +             PL
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP--TPLQTPI-----------QTPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTD SPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDDSPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
           TPVDVNIAYVEGREE ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG
Sbjct: 181 TPVDVNIAYVEGREE-ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISGCNSSDGRPG ITSAKSATSS+IERSLLKIPQLDGPMPDPYDDVLS
Sbjct: 241 AGDAANSVFEIEISGCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLS 289

Query: 301 TPN 304
           TPN
Sbjct: 301 TPN 289

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy Swiss-Prot
Match: P52655 (Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 8  IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG 54
          +Y +VIEDVIN +RD F+D+G  E VL EL+ +WE K+MQ+ AV G
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy Swiss-Prot
Match: Q99PM3 (Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1 PE=1 SV=2)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 8  IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG 54
          +Y +VIEDVIN +RD F+D+G  E VL EL+ +WE K+MQ+ AV G
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy Swiss-Prot
Match: Q5RCU0 (Transcription initiation factor IIA subunit 1 OS=Pongo abelii OX=9601 GN=GTF2A1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 8  IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG 54
          +Y +VIEDVIN +RD F+D+G  E VL EL+ +WE K+MQ+ AV G
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy Swiss-Prot
Match: O08949 (Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=Gtf2a1 PE=1 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.5e-06
Identity = 26/46 (56.52%), Postives = 35/46 (76.09%), Query Frame = 0


Query: 8  IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTG 54
          +Y +VIEDVIN +RD F+D+G  E VL EL+ +WE K+MQ+ AV G
Sbjct: 13 LYRSVIEDVINDVRDIFLDDGVDEQVLMELKTLWENKLMQSRAVDG 58

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy Swiss-Prot
Match: Q9UNN4 (TFIIA-alpha and beta-like factor OS=Homo sapiens OX=9606 GN=GTF2A1L PE=1 SV=2)

HSP 1 Score: 47.8 bits (112), Expect = 3.3e-04
Identity = 38/135 (28.15%), Postives = 63/135 (46.67%), Query Frame = 0


Query: 8   IYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPSKPTPGG 67
           +Y +VIEDVI  +R+ F + G  E VLK+L+ +WE K++Q+ A       S  S      
Sbjct: 10  LYRSVIEDVIEGVRNLFAEEGIEEQVLKDLKQLWETKVLQSKATEDFFRNSIQS------ 69

Query: 68  PITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPLPGTADNA 127
              P+  L +P+   +  ++ TA L+ P         L  F  A   ++++    T    
Sbjct: 70  ---PLFTLQLPHSLHQTLQSSTASLVIP-----AGRTLPSFTTAELGTSNSSANFTFPGY 129

Query: 128 MYNVPTGPSDHSASG 143
             +VP G +  + SG
Sbjct: 130 PIHVPAGVTLQTVSG 130

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy TrEMBL
Match: A0A0A0KE66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1)

HSP 1 Score: 552.7 bits (1423), Expect = 1.2e-153
Identity = 283/303 (93.40%), Postives = 284/303 (93.73%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 135 MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 194

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP  T L   +             PL
Sbjct: 195 SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP--TPLQTPI-----------QTPL 254

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR
Sbjct: 255 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 314

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
           TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG
Sbjct: 315 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 374

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS
Sbjct: 375 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 424

Query: 301 TPN 304
           TPN
Sbjct: 435 TPN 424

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy TrEMBL
Match: A0A1S3CM61 (transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC103502057 PE=3 SV=1)

HSP 1 Score: 540.4 bits (1391), Expect = 5.9e-150
Identity = 279/303 (92.08%), Postives = 281/303 (92.74%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP  T L   +             PL
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP--TPLQTPI-----------QTPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTD SPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDDSPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
           TPVDVNIAYVEGREE ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG
Sbjct: 181 TPVDVNIAYVEGREE-ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISGCNSSDGRPG ITSAKSATSS+IERSLLKIPQLDGPMPDPYDDVLS
Sbjct: 241 AGDAANSVFEIEISGCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLS 289

Query: 301 TPN 304
           TPN
Sbjct: 301 TPN 289

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy TrEMBL
Match: A0A5D3CVW1 (Transcription initiation factor IIA subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00280 PE=3 SV=1)

HSP 1 Score: 537.7 bits (1384), Expect = 3.8e-149
Identity = 278/303 (91.75%), Postives = 280/303 (92.41%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP  T L   +             PL
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP--TPLQTPI-----------QTPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTD SPAATTPGGSGNNNV VRSGRPTPYMQPPSWMGQR
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDDSPAATTPGGSGNNNVVVRSGRPTPYMQPPSWMGQR 180

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
           TPVDVNIAYVEGREE ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG
Sbjct: 181 TPVDVNIAYVEGREE-ADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISGCNSSDGRPG ITSAKSATSS+IERSLLKIPQLDGPMPDPYDDVLS
Sbjct: 241 AGDAANSVFEIEISGCNSSDGRPGVITSAKSATSSYIERSLLKIPQLDGPMPDPYDDVLS 289

Query: 301 TPN 304
           TPN
Sbjct: 301 TPN 289

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy TrEMBL
Match: A0A6J1FXQ4 (transcription initiation factor IIA large subunit-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111448672 PE=3 SV=1)

HSP 1 Score: 491.1 bits (1263), Expect = 4.1e-135
Identity = 255/303 (84.16%), Postives = 266/303 (87.79%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MA STSSIYINVIEDV+NKLRDEF DNGPGEDVLKELQGMWEAKMMQAGAV GPIERSAP
Sbjct: 1   MAISTSSIYINVIEDVVNKLRDEFTDNGPGEDVLKELQGMWEAKMMQAGAVNGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP  T L   +             PL
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP--TPLQTPI-----------QTPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTDASPA TTPGGS  +NV+VRSGRPT +MQPPSWMGQ+
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDASPAVTTPGGSA-SNVDVRSGRPTQFMQPPSWMGQK 180

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
            PVDVNIAYVEGR+E ADRG    HP+LTQDFFMMNSGKRKRD FASQYQ NGFIPQQDG
Sbjct: 181 APVDVNIAYVEGRDE-ADRGV--PHPALTQDFFMMNSGKRKRDGFASQYQTNGFIPQQDG 240

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISGCN+SDGRPG ITSAKSAT +HIERSL KIPQLDGP+PDPYDDVLS
Sbjct: 241 AGDAANSVFEIEISGCNASDGRPGVITSAKSATLTHIERSLFKIPQLDGPIPDPYDDVLS 286

Query: 301 TPN 304
           TPN
Sbjct: 301 TPN 286

[Close]

BLAST of CsaV3_6G016600 vs. ExPASy TrEMBL
Match: A0A6J1D2V5 (transcription initiation factor IIA subunit 1-like OS=Momordica charantia OX=3673 GN=LOC111017070 PE=3 SV=1)

HSP 1 Score: 490.7 bits (1262), Expect = 5.4e-135
Identity = 257/303 (84.82%), Postives = 268/303 (88.45%), Query Frame = 0


Query: 1   MATSTSSIYINVIEDVINKLRDEFVDNGPGEDVLKELQGMWEAKMMQAGAVTGPIERSAP 60
           MATSTSSIYINVIEDVINKLRDEF+DNGPGEDVLKELQGMWEAKMMQAGAV+GPIERSAP
Sbjct: 1   MATSTSSIYINVIEDVINKLRDEFIDNGPGEDVLKELQGMWEAKMMQAGAVSGPIERSAP 60

Query: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPL 120
           SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP  T L   +             PL
Sbjct: 61  SKPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPP--TPLQTPI-----------QTPL 120

Query: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPSWMGQR 180
           PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGS  NNVEVRSGRP P+MQPPSWMGQR
Sbjct: 121 PGTADNAMYNVPTGPSDHSASGTDASPAATTPGGSA-NNVEVRSGRPNPFMQPPSWMGQR 180

Query: 181 TPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQDG 240
           TPVDVNIAYVEGR+E ADRGA  +H SLTQDFFMMNSGKRKR+DFASQYQ NGFIPQQDG
Sbjct: 181 TPVDVNIAYVEGRDE-ADRGA--SHQSLTQDFFMMNSGKRKREDFASQYQNNGFIPQQDG 240

Query: 241 AGDAANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLLKIPQLDGPMPDPYDDVLS 300
           AGDAANSVFEIEISG N++DGRP + TS  S  SSHI RSLLKIPQLDGP+PDPYDDVLS
Sbjct: 241 AGDAANSVFEIEISGYNATDGRPSSRTSTNSVASSHIARSLLKIPQLDGPIPDPYDDVLS 286

Query: 301 TPN 304
           TPN
Sbjct: 301 TPN 286

[Close]

BLAST of CsaV3_6G016600 vs. TAIR 10
Match: AT1G07480.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 272.7 bits (696), Expect = 4.4e-73
Identity = 165/307 (53.75%), Postives = 204/307 (66.45%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPLP 122
           KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPP  T L   L             PLP
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPP--TPLQTPL-----------PTPLP 124

Query: 123 GTADN-AMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPS-WMGQ 182
           GTADN +MYN+PTG SD+            TPG     N++V++ RP+PYM PPS W   
Sbjct: 125 GTADNSSMYNIPTGSSDY-----------PTPGTENGVNIDVKA-RPSPYMPPPSPWTNP 184

Query: 183 RTPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQD 242
           R  +DVN+AYV+GR+E  +RG   ++   TQD F+ +SGKRKRDD +  YQ  G IPQQD
Sbjct: 185 R--LDVNVAYVDGRDE-PERG--NSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQD 244

Query: 243 GAGDA-ANSVFEIEISGCNSSDGR--PGAITSAKSATSSHIERSLLKIPQLDGPMPDPYD 302
           GAGDA   + FE +     S   R  P    S+ S           KIPQ+DGPMPDPYD
Sbjct: 245 GAGDAIPEANFECDAFRITSIGDRKVPRDFFSSSS-----------KIPQVDGPMPDPYD 268

Query: 303 DVLSTPN 304
           ++LSTPN
Sbjct: 305 EMLSTPN 268

[Close]

BLAST of CsaV3_6G016600 vs. TAIR 10
Match: AT1G07480.2 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 272.7 bits (696), Expect = 4.4e-73
Identity = 165/307 (53.75%), Postives = 204/307 (66.45%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPLP 122
           KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPP  T L   L             PLP
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPP--TPLQTPL-----------PTPLP 124

Query: 123 GTADN-AMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPS-WMGQ 182
           GTADN +MYN+PTG SD+            TPG     N++V++ RP+PYM PPS W   
Sbjct: 125 GTADNSSMYNIPTGSSDY-----------PTPGTENGVNIDVKA-RPSPYMPPPSPWTNP 184

Query: 183 RTPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQD 242
           R  +DVN+AYV+GR+E  +RG   ++   TQD F+ +SGKRKRDD +  YQ  G IPQQD
Sbjct: 185 R--LDVNVAYVDGRDE-PERG--NSNQQFTQDLFVPSSGKRKRDDSSGHYQNGGSIPQQD 244

Query: 243 GAGDA-ANSVFEIEISGCNSSDGR--PGAITSAKSATSSHIERSLLKIPQLDGPMPDPYD 302
           GAGDA   + FE +     S   R  P    S+ S           KIPQ+DGPMPDPYD
Sbjct: 245 GAGDAIPEANFECDAFRITSIGDRKVPRDFFSSSS-----------KIPQVDGPMPDPYD 268

Query: 303 DVLSTPN 304
           ++LSTPN
Sbjct: 305 EMLSTPN 268

[Close]

BLAST of CsaV3_6G016600 vs. TAIR 10
Match: AT1G07470.1 (Transcription factor IIA, alpha/beta subunit )

HSP 1 Score: 269.2 bits (687), Expect = 4.9e-72
Identity = 163/309 (52.75%), Postives = 202/309 (65.37%), Query Frame = 0


Query: 3   TSTSSIYINVIEDVINKLRDEFVDN-GPGEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
           T+TS++YI+VIEDV+NK+R+EF++N GPGE VL ELQG+WE KMMQAG + GPIERS+  
Sbjct: 5   TTTSAVYIHVIEDVVNKVREEFINNGGPGESVLSELQGIWETKMMQAGVLNGPIERSSAQ 64

Query: 63  KPTPGGPITPVHDLNVPYEGTEEYETPTADLLFPPVITSLSHLLIVFRNATTDSNSNPLP 122
           KPTPGGP+T  HDLNVPYEGTEEYETPTA++LFPP  T L   L             PLP
Sbjct: 65  KPTPGGPLT--HDLNVPYEGTEEYETPTAEMLFPP--TPLQTPL-----------PTPLP 124

Query: 123 GTADN-AMYNVPTGPSDHSASGTDASPAATTPGGSGNNNVEVRSGRPTPYMQPPS-WMGQ 182
           GTADN +MYN+PTG SD+            TPG     N++V++ RP+PYM PPS W   
Sbjct: 125 GTADNSSMYNIPTGSSDY-----------PTPGTENGVNIDVKA-RPSPYMPPPSPWTNP 184

Query: 183 RTPVDVNIAYVEGREEAADRGAAGAHPSLTQDFFMMNSGKRKRDDFASQYQANGFIPQQD 242
           R  +DVN+AYV+GR+E  +RG   ++   TQD F+ +SGKRKRDD ++ YQ  G IPQQD
Sbjct: 185 R--LDVNVAYVDGRDE-PERG--NSNQQFTQDLFVPSSGKRKRDDSSAHYQNGGSIPQQD 244

Query: 243 GAGDA-ANSVFEIEISGCNSSDGRPGAITSAKSATSSHIERSLL----KIPQLDGPMPDP 302
           GA DA   + FE              A           I R L+    KIPQ+DGPMPDP
Sbjct: 245 GASDAIPEANFEC-------------AALRITYVGDRKIPRDLIGSSSKIPQVDGPMPDP 268

Query: 303 YDDVLSTPN 304
           YD++LSTPN
Sbjct: 305 YDEMLSTPN 268

[Close]

BLAST of CsaV3_6G016600 vs. TAIR 10
Match: AT5G59230.1 (transcription factor-related )

HSP 1 Score: 61.6 bits (148), Expect = 1.6e-09
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 0


Query: 3  TSTSSIYINVIEDVINKLRDEFVDNGP-GEDVLKELQGMWEAKMMQAGAVTGPIERSAPS 62
          + TSS Y  VI+DVINK R + V NG   E VL ++Q MW+ KM+QAGA++G IE S+ S
Sbjct: 6  SDTSSSYNYVIDDVINKSRCDLVYNGELDESVLSQIQSMWKTKMIQAGAMSGTIETSSAS 65

Query: 63 KPT 65
           PT
Sbjct: 66 IPT 68

The following BLAST results are available for this feature:

BLAST of CsaV3_6G016600 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47152.2	1.3e-212	100.00	hypothetical protein Csa_020606 [Cucumis sativus]	[more]
XP_004143132.2	6.3e-154	93.73	LOW QUALITY PROTEIN: transcription initiation factor IIA large subunit [Cucumis ...	[more]
KAE8645883.1	9.1e-153	74.15	hypothetical protein Csa_017710 [Cucumis sativus]	[more]
XP_031745118.1	1.2e-152	93.07	LOW QUALITY PROTEIN: transcription initiation factor IIA subunit 1-like [Cucumis...	[more]
XP_008464085.1	1.2e-149	92.08	PREDICTED: transcription initiation factor IIA subunit 1 [Cucumis melo]	[more]

BLAST of CsaV3_6G016600 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P52655	3.5e-06	56.52	Transcription initiation factor IIA subunit 1 OS=Homo sapiens OX=9606 GN=GTF2A1 ...	[more]
Q99PM3	3.5e-06	56.52	Transcription initiation factor IIA subunit 1 OS=Mus musculus OX=10090 GN=Gtf2a1...	[more]
Q5RCU0	3.5e-06	56.52	Transcription initiation factor IIA subunit 1 OS=Pongo abelii OX=9601 GN=GTF2A1 ...	[more]
O08949	3.5e-06	56.52	Transcription initiation factor IIA subunit 1 OS=Rattus norvegicus OX=10116 GN=G...	[more]
Q9UNN4	3.3e-04	28.15	TFIIA-alpha and beta-like factor OS=Homo sapiens OX=9606 GN=GTF2A1L PE=1 SV=2	[more]

BLAST of CsaV3_6G016600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KE66	1.2e-153	93.40	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188660 PE=3 SV=1	[more]
A0A1S3CM61	5.9e-150	92.08	transcription initiation factor IIA subunit 1 OS=Cucumis melo OX=3656 GN=LOC1035...	[more]
A0A5D3CVW1	3.8e-149	91.75	Transcription initiation factor IIA subunit 1 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A6J1FXQ4	4.1e-135	84.16	transcription initiation factor IIA large subunit-like isoform X2 OS=Cucurbita m...	[more]
A0A6J1D2V5	5.4e-135	84.82	transcription initiation factor IIA subunit 1-like OS=Momordica charantia OX=367...	[more]

BLAST of CsaV3_6G016600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G07480.1	4.4e-73	53.75	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07480.2	4.4e-73	53.75	Transcription factor IIA, alpha/beta subunit	[more]
AT1G07470.1	4.9e-72	52.75	Transcription factor IIA, alpha/beta subunit	[more]
AT5G59230.1	1.6e-09	53.97	transcription factor-related	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004855	Transcription factor IIA, alpha/beta subunit	SMART	SM01371	TFIIA_2	coord: 7..329 e-value: 1.6E-10 score: 49.0
IPR004855	Transcription factor IIA, alpha/beta subunit	PFAM	PF03153	TFIIA	coord: 8..224 e-value: 7.0E-16 score: 59.2
IPR004855	Transcription factor IIA, alpha/beta subunit	PANTHER	PTHR12694	TRANSCRIPTION INITIATION FACTOR IIA SUBUNIT 1	coord: 2..308
None	No IPR available	GENE3D	1.10.287.100		coord: 1..53 e-value: 1.5E-20 score: 74.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..178
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 131..165
None	No IPR available	PANTHER	PTHR12694:SF16	BNAC08G45360D PROTEIN	coord: 2..308
None	No IPR available	CDD	cd07976	TFIIA_alpha_beta_like	coord: 5..62 e-value: 5.37356E-17 score: 73.7127
None	No IPR available	SUPERFAMILY	47396	Transcription factor IIA (TFIIA), alpha-helical domain	coord: 4..46

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G016600.1	CsaV3_6G016600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006367	transcription initiation from RNA polymerase II promoter
cellular_component	GO:0005672	transcription factor TFIIA complex