CsaV3_6G016530 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G016530
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Mitochondrial 28S Ribosomal protein
Location	chr6: 12359922 .. 12362394 (+)
RNA-Seq Expression	CsaV3_6G016530
Synteny	CsaV3_6G016530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTGTTTTGAAATAAAAATGAAATCCACTATTATAATTTAACAAAGCAAGACCTAAATATAAATATTAATAACTTAGGGTTGTTGCTATGGTTACCTTACATTTACCTCTCATGGGCTAACCGCAACGATAACATAGAATTATAGAACTACAGAGTTGGGCTTTTGGGCTTGGCTGGGCTGGGCTGGTCCATATATTTTACACTTTCCATTTCTCTAAACCCTGCTAGAGAGAGCTGCGAAATAGCGATACAAAGAGAGAGGCCACAACCAAAACTAGAGAGAGACGCCAATGGCTGTCGCCAACAGAACTGCGATCAGTCGAGCCCTAGATTTCTCCAGGTTATCTTCTTCCTTTGTCAGAACCTTCAGCTCCTCTTCTCCCTCAACCTCCTCTTCCAACCCCAATGCCTCCCCTACTTCGTCTCAAACCAAACGGAGGAAGAAGAAGAAGAACCTCTTCGAAGTAGTTCAGTTTTTGCCCAACTGGGGAGTTGGATACCATGTCGCCAAATCTCACTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGGTTTGTCTCGTCTCTTTTTTTTAGATGTATCTCTCTCTGTAATCTGCAGAAAATTTGAATCAAATGGTTTTCAGTTTCTTTCTGCCAGTGGTCACCATTTTTTGTTCGCATTCAAGTAAATAGAACGGTTGAGGGTTTTAATCAGTGGGATTACTTACTTTTCTTAATTGTTTTCTAAGTTTTGTAGAATTTAGGACTCTGACAACTTGCTTATGATAATTGATAATCAAACAGGGAGTGTAACAATTGTTTTCTTTTGGCTTTTTTTTCCTTACAGAGTGGCACGCACGGCAAGGCATGGGGCATTGCTCATAAAAATGGTTAGTCATTATTCTGTATCACGAAATTAGTTCCTCAATCGTTATTGGAATTTCATTTTAGTTTTTATTTCACCATGTTGCTGAAATTTTGCTCTGATATTTGTTAGTAGAATTTGCAACAATTGAATCTCTTGTATTATCTTTTTGTCTATGTTAACTTCTATAATTTGGGACCATGACATCAAGAACTGATGCTTTATAGTTGATTTAGATACAATATTTGTGAGACCTGTTTTTAATTTAAGTATAAGAAGAAAAATCTGGTTAATTGTTTTGAAAATTTGGCGTCTAAGGTTGACTTCCATTGTTTAGTTTGATAGGTTAAAAGGAGTTGAAAATAAGCTTAGTGATAAGACCAATTGTAAAGTTTAAAGCTAAATCGCGTCCAGTCCTATCCTATCTGCACTACTTCCTGTGTTTTAGTTGTCTTGCGGATTAGGGTGTGACAATATTATTCACTATTTACTGATCTTCACCGTTGCCTTATAGGATTATGCTTTACGATAATATAGGTTTGTTTGATAGTATAGGTTTTCCTCCCCAATTCTGTACTACTATATTCTAAGAAACGTTGAATTCTTAGTCAAATTTTGAAAACAAAATTAAGCTTGTGAAAACTTTTTTTTTAGTTTTCAAATCTTAGCTTAGTTTTTGAAAAAATAGATAGAAAGTGGGTAACAAAGCAAAGAAAAAGTATTATTTGTAAGCTTAATTTTCAAAAATCAAGTGGTCATCAAACGATCAGTAGTTACCCTTGTAAATAGTTTGCAAGTATTCAAGTTTGGACTTCTAAGGCATGAGATTCTGAAAGCTTAAGCTGGAGTTAGGCCAAATAACTTAGCCCCCTTTAGATTGGTCCTTTTGAAATATTTACTGCCTCAGGACTTGGTCATTGATATAGCCAACCATTATTAAATTGCTTCACATGAATGTTAGAATTCTCTTTTGAACTCTCAACTCTTGACTTGGTAATTGTTGTAGTCATCCTTCACTGCATTGCTTCAAATGAATGTTCAAATTTGAGTTTCTATCGACTTAAATTTCTATATGTTGTTGCTTTTTGCAATCTACTTTCATCAATGACTAAGGTTGAATAATGTTACAGGCACGCCGATTGTCGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGCTGGAAGTATATCGCTAGCTTGCCGCATTCGGGAGAAAGCAAAACATCAGCCGAAGTTCAAACTTCATGACTGCAGAGAAATCTCAGTTGCTGATTCTTTTTGGCGAACCTTACTTTCTGGTTCAAAGAGTTTTTAGGTGTTCCTTTTATCGGGGGAGCTATGTAAAAGTACTCATATAAAAAGACTATTGCTTGATTAATATGGTTGTGTTGATTGGAATTGCTTTTCAAACTGTAATTTGTAAGATTGTTTTTGTTGGCAATCCTAATTTTATTTTATCTTTTCATTTTATTGAATTTAGTAAATATTAGTTTGACATACAATCTAGATTTTGTGATCTTAACATATACACATACATATGTGTTTATATATGTATCACATACACGTTTTTATTATATTTAAATTTAAAATTATGAAATGCATAATTATATT

mRNA sequence

ATGGCTGTCGCCAACAGAACTGCGATCAGTCGAGCCCTAGATTTCTCCAGGTTATCTTCTTCCTTTGTCAGAACCTTCAGCTCCTCTTCTCCCTCAACCTCCTCTTCCAACCCCAATGCCTCCCCTACTTCGTCTCAAACCAAACGGAGGAAGAAGAAGAAGAACCTCTTCGAAGTAGTTCAGTTTTTGCCCAACTGGGGAGTTGGATACCATGTCGCCAAATCTCACTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCACGCACGGCAAGGCATGGGGCATTGCTCATAAAAATGGCACGCCGATTGTCGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGCTGGAAGTATATCGCTAGCTTGCCGCATTCGGGAGAAAGCAAAACATCAGCCGAAGTTCAAACTTCATGA

Coding sequence (CDS)

ATGGCTGTCGCCAACAGAACTGCGATCAGTCGAGCCCTAGATTTCTCCAGGTTATCTTCTTCCTTTGTCAGAACCTTCAGCTCCTCTTCTCCCTCAACCTCCTCTTCCAACCCCAATGCCTCCCCTACTTCGTCTCAAACCAAACGGAGGAAGAAGAAGAAGAACCTCTTCGAAGTAGTTCAGTTTTTGCCCAACTGGGGAGTTGGATACCATGTCGCCAAATCTCACTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCACGCACGGCAAGGCATGGGGCATTGCTCATAAAAATGGCACGCCGATTGTCGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGCTGGAAGTATATCGCTAGCTTGCCGCATTCGGGAGAAAGCAAAACATCAGCCGAAGTTCAAACTTCATGA

Protein sequence

MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVHKRCWKYIASLPHSGESKTSAEVQTS*

Homology

[Close]

BLAST of CsaV3_6G016530 vs. NCBI nr
Match: XP_004143137.1 (uncharacterized protein LOC101207989 [Cucumis sativus] >KGN47116.1 hypothetical protein Csa_020646 [Cucumis sativus])

HSP 1 Score: 287.7 bits (735), Expect = 5.5e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV
Sbjct: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120

Query: 121 KRCWKYIASLPHSGESKTSAEVQTS 146
           KRCWKYIASLPHSGESKTSAEVQTS
Sbjct: 121 KRCWKYIASLPHSGESKTSAEVQTS 145

[Close]

BLAST of CsaV3_6G016530 vs. NCBI nr
Match: XP_008464074.1 (PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo] >KAA0061862.1 uncharacterized protein E6C27_scaffold89G001010 [Cucumis melo var. makuwa] >TYK15394.1 uncharacterized protein E5676_scaffold571G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 276.6 bits (706), Expect = 1.3e-70
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           MAVANRTAISRALDFSRLSSSF+RTF+SSSPSTSSSNPNASP+SSQTKRRKKKKNLFEV+
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNG PIVEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGMPIVEAPKKISGVH 120

Query: 121 KRCWKYIASLPHSGESKTSAEVQTS 146
           KRCWKYIASLP  GESKTSAEVQTS
Sbjct: 121 KRCWKYIASLPRLGESKTSAEVQTS 145

[Close]

BLAST of CsaV3_6G016530 vs. NCBI nr
Match: XP_038900676.1 (uncharacterized protein LOC120087826 [Benincasa hispida])

HSP 1 Score: 259.2 bits (661), Expect = 2.1e-65
Identity = 128/143 (89.51%), Postives = 136/143 (95.10%), Query Frame = 0


Query: 3   VANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVVQF 62
           VANRTAISRALDFSRLSS+F+RTFS+SSPSTSSSNPNAS  S++ KRRKKKKNLFEVVQF
Sbjct: 4   VANRTAISRALDFSRLSSTFIRTFSTSSPSTSSSNPNASTASTKNKRRKKKKNLFEVVQF 63

Query: 63  LPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVHKR 122
           LPNWGVGYHVAK+HWDEISYQITKINLYK+GTHGKAWGIAHK+GTPI EAPKKISGVHKR
Sbjct: 64  LPNWGVGYHVAKAHWDEISYQITKINLYKNGTHGKAWGIAHKDGTPIAEAPKKISGVHKR 123

Query: 123 CWKYIASLPHSGESKTSAEVQTS 146
           CWKYIASLP SGES  SAEVQTS
Sbjct: 124 CWKYIASLPRSGESNPSAEVQTS 146

[Close]

BLAST of CsaV3_6G016530 vs. NCBI nr
Match: XP_022944512.1 (uncharacterized protein LOC111448948 [Cucurbita moschata])

HSP 1 Score: 241.1 bits (614), Expect = 5.9e-60
Identity = 119/145 (82.07%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           M+VANR+AIS AL FSRLSSSF R+F++SSPS S+ NPNA   S++TKRRKKKKNLFEVV
Sbjct: 1   MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVV 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG+AHK+GT I EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVAHKDGTRIAEAPKKISGVH 120

Query: 121 KRCWKYIASLPHSGESKTSAEVQTS 146
           KRCWKYIASLP SG+S  SAEVQTS
Sbjct: 121 KRCWKYIASLPRSGDSDPSAEVQTS 145

[Close]

BLAST of CsaV3_6G016530 vs. NCBI nr
Match: XP_023532313.1 (uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 237.3 bits (604), Expect = 8.5e-59
Identity = 121/156 (77.56%), Postives = 131/156 (83.97%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           MAVANRT ISRALDFSRL+SSF+R FS+S+ STSSS+P+AS  +S+ KRRKKKKNLFEV+
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWGIAHKNG PI EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120

Query: 121 KRCWKYIASLPHS-----------GESKTSAEVQTS 146
           KRCWKYI SLP S           GES  SAE QTS
Sbjct: 121 KRCWKYIPSLPRSSENEPTTMTNLGESNPSAEAQTS 156

[Close]

BLAST of CsaV3_6G016530 vs. ExPASy TrEMBL
Match: A0A0A0KH76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188090 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.7e-74
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV
Sbjct: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120

Query: 121 KRCWKYIASLPHSGESKTSAEVQTS 146
           KRCWKYIASLPHSGESKTSAEVQTS
Sbjct: 121 KRCWKYIASLPHSGESKTSAEVQTS 145

[Close]

BLAST of CsaV3_6G016530 vs. ExPASy TrEMBL
Match: A0A5A7V0Y6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold571G00360 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.1e-71
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           MAVANRTAISRALDFSRLSSSF+RTF+SSSPSTSSSNPNASP+SSQTKRRKKKKNLFEV+
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNG PIVEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGMPIVEAPKKISGVH 120

Query: 121 KRCWKYIASLPHSGESKTSAEVQTS 146
           KRCWKYIASLP  GESKTSAEVQTS
Sbjct: 121 KRCWKYIASLPRLGESKTSAEVQTS 145

[Close]

BLAST of CsaV3_6G016530 vs. ExPASy TrEMBL
Match: A0A1S3CKN2 (uncharacterized protein LOC103502049 OS=Cucumis melo OX=3656 GN=LOC103502049 PE=4 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 6.1e-71
Identity = 138/145 (95.17%), Postives = 142/145 (97.93%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           MAVANRTAISRALDFSRLSSSF+RTF+SSSPSTSSSNPNASP+SSQTKRRKKKKNLFEV+
Sbjct: 1   MAVANRTAISRALDFSRLSSSFIRTFTSSSPSTSSSNPNASPSSSQTKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNG PIVEAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGMPIVEAPKKISGVH 120

Query: 121 KRCWKYIASLPHSGESKTSAEVQTS 146
           KRCWKYIASLP  GESKTSAEVQTS
Sbjct: 121 KRCWKYIASLPRLGESKTSAEVQTS 145

[Close]

BLAST of CsaV3_6G016530 vs. ExPASy TrEMBL
Match: A0A6J1FVV3 (uncharacterized protein LOC111448948 OS=Cucurbita moschata OX=3662 GN=LOC111448948 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.9e-60
Identity = 119/145 (82.07%), Postives = 132/145 (91.03%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           M+VANR+AIS AL FSRLSSSF R+F++SSPS S+ NPNA   S++TKRRKKKKNLFEVV
Sbjct: 1   MSVANRSAISGALHFSRLSSSFTRSFTTSSPSPSTPNPNAPTASTKTKRRKKKKNLFEVV 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAK+HWDEISYQITK+NLYKSGTHGKAWG+AHK+GT I EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKAHWDEISYQITKLNLYKSGTHGKAWGVAHKDGTRIAEAPKKISGVH 120

Query: 121 KRCWKYIASLPHSGESKTSAEVQTS 146
           KRCWKYIASLP SG+S  SAEVQTS
Sbjct: 121 KRCWKYIASLPRSGDSDPSAEVQTS 145

[Close]

BLAST of CsaV3_6G016530 vs. ExPASy TrEMBL
Match: A0A6J1G714 (uncharacterized protein LOC111451448 OS=Cucurbita moschata OX=3662 GN=LOC111451448 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 4.1e-59
Identity = 121/156 (77.56%), Postives = 132/156 (84.62%), Query Frame = 0


Query: 1   MAVANRTAISRALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFEVV 60
           MAVANRT ISRALDFSRL+SSF+R FS+S+ STSSS+P+AS  +S+ KRRKKKKNLFEV+
Sbjct: 1   MAVANRTTISRALDFSRLASSFIRNFSTSTLSTSSSDPSASAAASKNKRRKKKKNLFEVI 60

Query: 61  QFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISGVH 120
           QFLPNWGVGYHVAK HWDEISYQITKINLYK+GTHGKAWGIAHKNG PI EAPKKISGVH
Sbjct: 61  QFLPNWGVGYHVAKGHWDEISYQITKINLYKNGTHGKAWGIAHKNGAPIAEAPKKISGVH 120

Query: 121 KRCWKYIASLPHS-----------GESKTSAEVQTS 146
           KRCWKYI SLP S           GES  SAEVQ+S
Sbjct: 121 KRCWKYIPSLPRSLENEPTTMTNLGESNPSAEVQSS 156

[Close]

BLAST of CsaV3_6G016530 vs. TAIR 10
Match: AT5G58990.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G52370.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 159.8 bits (403), Expect = 1.6e-39
Identity = 85/148 (57.43%), Postives = 109/148 (73.65%), Query Frame = 0


Query: 1   MAVANRTAISR--ALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTK-RRKKKKNLF 60
           M + NR AISR   +    LS S +R F S++PS +S+  + +P+S   K +R+KKKNL 
Sbjct: 3   MTLMNR-AISRTETVGAFSLSLSLLRNF-SAAPSAASTPASENPSSDSNKPKRRKKKNLI 62

Query: 61  EVVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKIS 120
           EV QFLPNWG+GYH+AK+HW+ ISY+ITKINLYK G HGKAWGI HK+G    EAPKKIS
Sbjct: 63  EVAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKIS 122

Query: 121 GVHKRCWKYIASLPHSGESKTSAEVQTS 146
           GVHKRCWKYI +L  +  + T+A+VQ +
Sbjct: 123 GVHKRCWKYIPNLSKTTPATTTADVQAA 148

[Close]

BLAST of CsaV3_6G016530 vs. TAIR 10
Match: AT5G52370.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G58990.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 158.7 bits (400), Expect = 3.6e-39
Identity = 83/147 (56.46%), Postives = 105/147 (71.43%), Query Frame = 0


Query: 1   MAVANRTAISR--ALDFSRLSSSFVRTFSSSSPSTSSSNPNASPTSSQTKRRKKKKNLFE 60
           M + NR AISR   +   RLS + +R FS++  S + S+ ++ P      +R+KKKNL E
Sbjct: 3   MTLINR-AISRTETVGAFRLSLNLLRNFSAAPASENPSSDSSKP------KRRKKKNLIE 62

Query: 61  VVQFLPNWGVGYHVAKSHWDEISYQITKINLYKSGTHGKAWGIAHKNGTPIVEAPKKISG 120
           V QFLPNWG+GYH+AK+HW+ ISY+ITKINLYK G HGKAWGI HK+G    EAPKKISG
Sbjct: 63  VAQFLPNWGIGYHMAKAHWNGISYEITKINLYKDGRHGKAWGIVHKDGLRAAEAPKKISG 122

Query: 121 VHKRCWKYIASLPHSGESKTSAEVQTS 146
           VHKRCWKYI +L  +  + TSA VQ +
Sbjct: 123 VHKRCWKYIPNLSKTAPATTSAHVQAA 142

The following BLAST results are available for this feature:

BLAST of CsaV3_6G016530 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004143137.1	5.5e-74	100.00	uncharacterized protein LOC101207989 [Cucumis sativus] >KGN47116.1 hypothetical ...	[more]
XP_008464074.1	1.3e-70	95.17	PREDICTED: uncharacterized protein LOC103502049 [Cucumis melo] >KAA0061862.1 unc...	[more]
XP_038900676.1	2.1e-65	89.51	uncharacterized protein LOC120087826 [Benincasa hispida]	[more]
XP_022944512.1	5.9e-60	82.07	uncharacterized protein LOC111448948 [Cucurbita moschata]	[more]
XP_023532313.1	8.5e-59	77.56	uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CsaV3_6G016530 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G016530 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH76	2.7e-74	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G188090 PE=4 SV=1	[more]
A0A5A7V0Y6	6.1e-71	95.17	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3CKN2	6.1e-71	95.17	uncharacterized protein LOC103502049 OS=Cucumis melo OX=3656 GN=LOC103502049 PE=...	[more]
A0A6J1FVV3	2.9e-60	82.07	uncharacterized protein LOC111448948 OS=Cucurbita moschata OX=3662 GN=LOC1114489...	[more]
A0A6J1G714	4.1e-59	77.56	uncharacterized protein LOC111451448 OS=Cucurbita moschata OX=3662 GN=LOC1114514...	[more]

BLAST of CsaV3_6G016530 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G58990.1	1.6e-39	57.43	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT5G52370.1	3.6e-39	56.46	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032053	Mitochondrial 28S ribosomal protein S34	PFAM	PF16053	MRP-S34	coord: 54..128 e-value: 1.4E-11 score: 44.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..45
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..53
None	No IPR available	PANTHER	PTHR35316	28S RIBOSOMAL S34 PROTEIN	coord: 3..142
None	No IPR available	PANTHER	PTHR35316:SF1	28S RIBOSOMAL S34 PROTEIN	coord: 3..142

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G016530.1	CsaV3_6G016530.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0003735	structural constituent of ribosome