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CsaV3_6G015700 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.TATGTTATATACTTGCTAGTTTATAGAAAACCATAATAAAAGAAAATGCAAAAGAGAAAAAAAGTTAAAAGAATAAAGGAAAAAATTTAGAAAAAAAAACGCTTATAAAGAAAGAAGAAAACAGAAAAAGGAAAAAGCGGCACAAGGGAGAAGGAAAATAATGCATTTTGGGGTAAAGTAGTAATTTAACTGATTTTTGGTTTGGGCATATAAACGAACCCTCCATGCAATTTTTCCTCCCCTTCTTCACGTTAACTCTTCGCTTTCTCTCTCTTCCATTCATCTTTCTCCTTCTTCCTCCGGCGACCTGTTCGACGGCGTCCGGGGCAATCTCCTCCAACGACAGTGTGGTTCTTCCCTCTCGACAGCACGTACGTGAGCAAGGCGTACGAGCGAGCCGACGGCATTGACGCGAAAACCTCCTTATCGAGCCCAGGGCTCCCACGAACCAGCAACGATCACGCACAGCAGCAGCGTCGAACGTGACTCAGGCGGTTTGCAAACCCTAAAACTGCGTTTTCCCCCATCCTAAAAGGTTTGAAACTTACCCATTTTTGTTCGGCATTATATTTGAAATACCCACTTCTGTGTTGAATGTCTGTGATTTGATGATTCCCTTTTGTTTGGCTTTGATATTCTTATATGCTTTAAGATTAGTCGAGTTGAGGGGAATGTCTATAGATTTTATCTTTCGTTTTCGTTTTTTCCCCCTTTCCCCCTTGTTATTTGGTTTAGGAATTGAGTTGTATACGCTTTTATGTGCATCTTATTGAGAATAATGATTGAATACTGAATTTCTTGAAAATGTGTTTAGGCTGAAAGAGATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGGTATAGTTTCATACTACACAATGATAATCTCATTTATGTATGACTCTCTTATAACTATTTAGTTTTCAATTTTTAGTTTTTCAAGATTGTGTTTGATGCTCCCAACTCATTGACTATGATTTTCATTTTCTAATGTAAACATTGAATTCGGAGCAAGTTTCAATAGAAAAATGTTTTTAAAAATTACTATTCTTTAGTTTTCAAAACTTGGCTTAAATTTTGAAGACTCACGTAAAAAGAAGAATATAACGAAACATAGAAATCAATAGGTTTAAGTAATATTTACAAGCTTAATTTTCAAGAACCAAAAGCTTAGGGTGTGTTTGGCCCAAGGAGTTGTGAAATATAAGGTAAGAGCTGAGAAGTAGTAGTTGTGAACTTCACTCCTTGTTTGGCTCGAGGAGTTGGTGGGTCCTACTCCTAAATAACTTCAATTTTATATGGTGGACCTCAAAGTTCACAACTCTCTGAGTTTCATTACTCCTTAGTCCTCAATATTTCACTCCGTATCCCAAACACTTGTCTGGCTCACCAACTTCTAAGTTAGTGTTAAATATTTCAACCTCAATGGTTTTCACTACCAAAGTTGCACATTTATTAAGGAACTCCGTCTTGCAATTCTGTAACCCCAAACACATGGTTAATAACTATAACATATTAACTCCAAACTTCCTCACTCAACTTAGCACCCCAACACCCCTCAATTGTTATAAAACAGGGTCTCATTGACTCATGAAATTTATTGTGTATTTAAACATGTTTAAACTTTACCTTAATAAAGGGTTGCAGTAAGTTTCCTCGGAAGAAGTTTCTATTTAAGTCATTCTCAAGTACTGTTACTGTTTGACATGGAAAATAGTTAACTATCGAAAAATATTTACCACATTTATATAAAGTTTGGTTATAGGGATGCACAGGTTATTTGTTAACCCTTTTATTTGTTACCTTCTTTTGATTTATGACTCTTTTACACAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGTAAAAGTAAAATCTCTTATAGTTTTTGGAGCCTTTTAATGTTGAATAGATTATTTTAATGTCATCACATGCTACAAATTTAACGAGAACTAGAGAGGATTTTCTATTTTCCTATCCCAAAACCAGTTCTCTCGTACTTTTGTTGTCTCTCACAACAACAATGATGTGGGGTGGGGGGGGGGGGGGGGGGAGAAGAATGGTGACGTTAGTTTGTAATTATGTGATTTTCAGTTTCCATATAATAATGTCTTGCCTACCTTCTTATTTTGCTGACGTTAACGTTTACCTCTCTGTCATTTTTTTATGCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAAGTGAGTTTCATTTTATTTGATCTTATTTTCTTGAAATACAAGAATATTGTGAGAATTGTGTTCCATAAAATATGTTGAAATAACTTTGGTAGCTTGGCCCGTGTTGAATAAGATTTTTGTAAATGATGAAGATATTAGGAAATCAGTTCAAGTCATGATGATTGCCTACCTAAAATTTAATTTTCTACACGTTACTCTGACAATCAAATATAGTAACGTTGGATGGTTGTTTTGTTAGAATAGTTAAGATGCGTTCAAGTTGGCTCTAACAGTGTTGGATACATATTGAAAATTGGTATACGTTAGTTTTTAACAAACATTTTGCATTTTGTCTCAGCTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGAGATCAATCTGATATGAGTAATTGAAGTCATGATATTTCTGTAGTGGAAGTGGTTTGGAGTTTTAGGCAATTCTCCTTTATGAGCTTCAACTGGGGAATTCGTGCATTTAGAATTTAAATTGAACATCCACCCACGGTTTTTTCTTATTGTTTCATTGACTCACAAGCATGTTTTTTGTAAAGGAAGGGAAAAAACGCTTACTGGTACACCAAATATTGAGGTTTTTGGTGACAAAGAAAGTCGATTAACAAGTTTATCCTTTTGGATCTTTTTGGTTGATCTTTCATTGCTAAAACATTTTCTTATTGTGAGGTTGATGAAAATTTTGAAGGGCCTCCTTTGATTTAAGATAAA ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA ATGGTGTTCCCAGAAGAAGAAATCACCAAACTCTTTAGAGTCCGAAAAACTGTGTTGCAGATGTTGAAAGACAGAGGCTATTTTGTTGGGGATTTCGAGCTTGATATGTCTAAAGTACAATTTAAGAATAAGTTTGGTGAGAACATGAAAAGAGAAGATCTGGTTATCAATAAATCCAAGAGAAATAATAGCTCTGATCAGATATATGTTTTCTTTCCTGAAGAGCCGAAGGTTGGTATAAAGATAGTGGAAACTTATGTAGGTCGTATGAAATCAGAGAATGTTTTCAGAGCAATATTTGTTGTTCAACTGAATTTGACCCCCTTTGCCCGAAATAAAATCGCCGAATTATCGTCTTCCAAACTCCATTTGGAAGTTTTCCAGGAAACAGAATTGTTGGTTAACATCAAAGAGCATGTTCTCATTCCCGAGCACCAGACACTCACAGATGAAGAGAAGAAAACGTTGTTGGGGAGGTATACGGTGAAAGAAACACAACTACCTCGCATGCAAGTTACCGATCCAATTTCTAGATATTATGGGCTGAAGCGTGGACATGTAGTGAAGATCATCCGACCAAGCGAAACTGCTGGAAGATATGTGACTTATAGATATGTTGTTTGA MVFPEEEITKLFRVRKTVLQMLKDRGYFVGDFELDMSKVQFKNKFGENMKREDLVINKSKRNNSSDQIYVFFPEEPKVGIKIVETYVGRMKSENVFRAIFVVQLNLTPFARNKIAELSSSKLHLEVFQETELLVNIKEHVLIPEHQTLTDEEKKTLLGRYTVKETQLPRMQVTDPISRYYGLKRGHVVKIIRPSETAGRYVTYRYVV* Homology
BLAST of CsaV3_6G015700 vs. NCBI nr
Match: XP_004143184.1 (DNA-directed RNA polymerases II and IV subunit 5A [Cucumis sativus] >KGN47027.1 hypothetical protein Csa_020872 [Cucumis sativus]) HSP 1 Score: 403.7 bits (1036), Expect = 9.8e-109 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. NCBI nr
Match: XP_008456369.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo] >KAA0054557.1 DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 391.3 bits (1004), Expect = 5.0e-105 Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. NCBI nr
Match: TYK20394.1 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 380.9 bits (977), Expect = 6.8e-102 Identity = 199/223 (89.24%), Postives = 204/223 (91.48%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. NCBI nr
Match: XP_008456371.1 (PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 [Cucumis melo]) HSP 1 Score: 354.4 bits (908), Expect = 6.8e-94 Identity = 179/187 (95.72%), Postives = 184/187 (98.40%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. NCBI nr
Match: XP_018829461.1 (DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_018829463.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_018829464.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans regia] >XP_041001822.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >XP_041001823.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >XP_041001824.1 DNA-directed RNA polymerases II and IV subunit 5A-like [Juglans microcarpa x Juglans regia] >KAF5451447.1 hypothetical protein F2P56_026555 [Juglans regia]) HSP 1 Score: 339.0 bits (868), Expect = 3.0e-89 Identity = 169/207 (81.64%), Postives = 190/207 (91.79%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1) HSP 1 Score: 300.1 bits (767), Expect = 2.0e-80 Identity = 150/203 (73.89%), Postives = 177/203 (87.19%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy Swiss-Prot
Match: Q80UW8 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Mus musculus OX=10090 GN=Polr2e PE=1 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 2.3e-52 Identity = 104/207 (50.24%), Postives = 147/207 (71.01%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy Swiss-Prot
Match: B0BNE2 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Rattus norvegicus OX=10116 GN=Polr2e PE=2 SV=1) HSP 1 Score: 206.8 bits (525), Expect = 2.3e-52 Identity = 104/207 (50.24%), Postives = 147/207 (71.01%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy Swiss-Prot
Match: Q5R587 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Pongo abelii OX=9601 GN=POLR2E PE=2 SV=1) HSP 1 Score: 205.3 bits (521), Expect = 6.7e-52 Identity = 103/207 (49.76%), Postives = 146/207 (70.53%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy Swiss-Prot
Match: Q54EH2 (DNA-directed RNA polymerases I, II, and III subunit rpabc1 OS=Dictyostelium discoideum OX=44689 GN=polr2e PE=3 SV=2) HSP 1 Score: 203.8 bits (517), Expect = 2.0e-51 Identity = 107/203 (52.71%), Postives = 139/203 (68.47%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy TrEMBL
Match: A0A0A0KF69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G170410 PE=3 SV=1) HSP 1 Score: 403.7 bits (1036), Expect = 4.7e-109 Identity = 207/207 (100.00%), Postives = 207/207 (100.00%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy TrEMBL
Match: A0A5A7UJ12 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold24G003460 PE=3 SV=1) HSP 1 Score: 391.3 bits (1004), Expect = 2.4e-105 Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy TrEMBL
Match: A0A1S3C2N2 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103496327 PE=3 SV=1) HSP 1 Score: 391.3 bits (1004), Expect = 2.4e-105 Identity = 199/207 (96.14%), Postives = 204/207 (98.55%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy TrEMBL
Match: A0A5D3DA58 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold519G00160 PE=3 SV=1) HSP 1 Score: 380.9 bits (977), Expect = 3.3e-102 Identity = 199/223 (89.24%), Postives = 204/223 (91.48%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. ExPASy TrEMBL
Match: A0A1S3C358 (DNA-directed RNA polymerases II and IV subunit 5A-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103496327 PE=3 SV=1) HSP 1 Score: 354.4 bits (908), Expect = 3.3e-94 Identity = 179/187 (95.72%), Postives = 184/187 (98.40%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein ) HSP 1 Score: 300.1 bits (767), Expect = 1.4e-81 Identity = 150/203 (73.89%), Postives = 177/203 (87.19%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C ) HSP 1 Score: 181.4 bits (459), Expect = 7.4e-46 Identity = 96/207 (46.38%), Postives = 145/207 (70.05%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D ) HSP 1 Score: 129.0 bits (323), Expect = 4.3e-30 Identity = 80/201 (39.80%), Postives = 124/201 (61.69%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein ) HSP 1 Score: 123.6 bits (309), Expect = 1.8e-28 Identity = 74/201 (36.82%), Postives = 115/201 (57.21%), Query Frame = 0
BLAST of CsaV3_6G015700 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E ) HSP 1 Score: 105.9 bits (263), Expect = 3.9e-23 Identity = 67/202 (33.17%), Postives = 109/202 (53.96%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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