CsaV3_6G015440 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G015440
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 11350910 .. 11352753 (+)
RNA-Seq ExpressionCsaV3_6G015440
SyntenyCsaV3_6G015440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTCAAGAGTGGAGTTCTCAAGCCTATGCGAATGCCAAAATGTACAAGGAAAGGACAAAGGCATGGCATGATAACTGAATTCGTAAACGTGAATTTAGAATTGGTTAGAAAGTATTATTATTCAATTCATGTTTCCGACTATTTCTAGGTAAGCTCTGATCAAGATGGTTTGGGCCATTTTTGGTTAAGCAAGTTTTTCCACATGGTGCAGTAGAGATCACATCATCAGATGGAACAAATGCGTTTAAGGTAAACAGACAGAGGCTCAAGGTGTACATTGACAAAGAACGATGTGATAAATTTTTTGTCAAACTGTTGTAAAACGCCTTTTACACAGTGCCTATGAAACGCATATATGCATTTTGTAACTCATTGCAAGGTTTATCATGTATACATAATGCATCCTTTTGTGTATCATTATTGCTTTATTTTGCTTTTCTTCTTCTTGCTTAGTTGTTTATTTTCTTATTTTAATTGAATTCTTTTTCATCTTCTTAATCGCTTTACGAACTTCTTTTAATCGCATCTTTCATGTTTTGCTCTCTTTACAATATATCTTTATCGCTTAATATCCCTAGGATAGTTAGAACTCTTTTGTGCTTATGAAAAATCATTGGACGATTTGCTGCTATGCAAGAAATCAAAGGACAATGACGCGAAAGAAACCTAGGTGGCATGCTTTGGGGTTTTGAAATTTAAATTGTCTAGAAAATTGTGCTTTACGTGAGAAATGTGAGATGTCGTCATCATCAAACTATCACTGAAGGCTTTGAAGAGATGCGCTGACCTGTGCCAGATGCAATTAATGATGTGATGGTCGTAATAATTACCCCTTAGCAAATATATATCTGAAGCACTCCCTTTTACGTTTTTCTTTAAAATTTATCGCGCTTAGGATTTCCCATTTTTAAACCCTTGCTGGAAAATTACTTCATCTCCATTGTCCCTTCATTTATCCATTTTCAATGGTCGACAAGCATAAAAAAACCTCCAAAATCACTCAAATTACTAAAAGTCTTCAGCAGACAAACGTTTCATTTTCACCAAAACAACCCAAACACCCAAAAGTTTCAAAGACCGTCGGAACCACTTCTCAGAAATCCAGACATGAGGAGTCTAGGAAGAAGATAATCTTCAAGCCATGCACCCACCCCTTAACTCAAAATGAAACCCACTTCGTTAGACCTAGTTTGGAAGCTGGAGACTAGATTAGGCGAGAGGAAAAAATATATATGGAATTACTAGATTTGGGAATAGGGATGGAAGCCATAAATCCAGAGGACAGACGACCACATTACTTACACTTAAAACACGGGCCTGGAAAAGTACTTTTGGGGCATAAGGAAGCCAAGCACAAAGGAAACTCTACACATTCCTTTTCAATTATCAAGTCAAGTTATGAAACTCTTAGAAGAATTATAGGTTGTTGAGAAAACGAAGAGGGACGTGGAAGAGAAGAACAAGGAAGATGAAGAAAGAATTAGAAAAAAAAGAAAGAAAGAGAAAAGAGCCCTCCGTGAGGAAAGGGCAAGAAAGGAAGAGGAAAGAATAAGGGAAGATGAGGAAAGAAGAAATAGAGAACGCATACACAAAGCACGGATGATGAAGGAAAAACGGGAAAAAGAAGAAGCAGACAGGATAGAGCGAGAAGCAGCCCGCAAAGAGGATAAGTGTTTTCGTAAGATATCCAAGGAGAAAAGGCAAAGTGTGACCTCCTTGGCAGAAGCAAAAAGCAAATTGGCGAAGATACAGACTCCCAAGAAAATGAAACAGGAAAAGCTTGAGAAACTGGGTGAGAAAGTAGAAAGAGTTGCCACAAAATATAAGACGACAGAGTAG

mRNA sequence

ATGAGCTTCAAGAGTGGAGTTCTCAAGCCTATGCGAATGCCAAAATGTACAAGGAAAGGACAAAGGCATGGCATGATAACTGAATTCGTAAACGTGAATTTAGAATTGCAAGTTTTTCCACATGGTGCAGTAGAGATCACATCATCAGATGGAACAAATGCGTTTAAGGTTGTTGAGAAAACGAAGAGGGACGTGGAAGAGAAGAACAAGGAAGATGAAGAAAGAATTAGAAAAAAAAGAAAGAAAGAGAAAAGAGCCCTCCGTGAGGAAAGGGCAAGAAAGGAAGAGGAAAGAATAAGGGAAGATGAGGAAAGAAGAAATAGAGAACGCATACACAAAGCACGGATGATGAAGGAAAAACGGGAAAAAGAAGAAGCAGACAGGATAGAGCGAGAAGCAGCCCGCAAAGAGGATAAGTGTTTTCGTAAGATATCCAAGGAGAAAAGGCAAAGTGTGACCTCCTTGGCAGAAGCAAAAAGCAAATTGGCGAAGATACAGACTCCCAAGAAAATGAAACAGGAAAAGCTTGAGAAACTGGGTGAGAAAGTAGAAAGAGTTGCCACAAAATATAAGACGACAGAGTAG

Coding sequence (CDS)

ATGAGCTTCAAGAGTGGAGTTCTCAAGCCTATGCGAATGCCAAAATGTACAAGGAAAGGACAAAGGCATGGCATGATAACTGAATTCGTAAACGTGAATTTAGAATTGCAAGTTTTTCCACATGGTGCAGTAGAGATCACATCATCAGATGGAACAAATGCGTTTAAGGTTGTTGAGAAAACGAAGAGGGACGTGGAAGAGAAGAACAAGGAAGATGAAGAAAGAATTAGAAAAAAAAGAAAGAAAGAGAAAAGAGCCCTCCGTGAGGAAAGGGCAAGAAAGGAAGAGGAAAGAATAAGGGAAGATGAGGAAAGAAGAAATAGAGAACGCATACACAAAGCACGGATGATGAAGGAAAAACGGGAAAAAGAAGAAGCAGACAGGATAGAGCGAGAAGCAGCCCGCAAAGAGGATAAGTGTTTTCGTAAGATATCCAAGGAGAAAAGGCAAAGTGTGACCTCCTTGGCAGAAGCAAAAAGCAAATTGGCGAAGATACAGACTCCCAAGAAAATGAAACAGGAAAAGCTTGAGAAACTGGGTGAGAAAGTAGAAAGAGTTGCCACAAAATATAAGACGACAGAGTAG

Protein sequence

MSFKSGVLKPMRMPKCTRKGQRHGMITEFVNVNLELQVFPHGAVEITSSDGTNAFKVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKARMMKEKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEKLGEKVERVATKYKTTE*
Homology
BLAST of CsaV3_6G015440 vs. NCBI nr
Match: KAE8646926.1 (hypothetical protein Csa_020807 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 8.9e-88
Identity = 194/194 (100.00%), Postives = 194/194 (100.00%), Query Frame = 0

Query: 1   MSFKSGVLKPMRMPKCTRKGQRHGMITEFVNVNLELQVFPHGAVEITSSDGTNAFKVVEK 60
           MSFKSGVLKPMRMPKCTRKGQRHGMITEFVNVNLELQVFPHGAVEITSSDGTNAFKVVEK
Sbjct: 1   MSFKSGVLKPMRMPKCTRKGQRHGMITEFVNVNLELQVFPHGAVEITSSDGTNAFKVVEK 60

Query: 61  TKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKARMMKEK 120
           TKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKARMMKEK
Sbjct: 61  TKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKARMMKEK 120

Query: 121 REKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEKLG 180
           REKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEKLG
Sbjct: 121 REKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEKLG 180

Query: 181 EKVERVATKYKTTE 195
           EKVERVATKYKTTE
Sbjct: 181 EKVERVATKYKTTE 194

BLAST of CsaV3_6G015440 vs. NCBI nr
Match: TYK15883.1 (hypothetical protein E5676_scaffold637G00630 [Cucumis melo var. makuwa])

HSP 1 Score: 83.2 bits (204), Expect = 2.7e-12
Identity = 63/120 (52.50%), Postives = 88/120 (73.33%), Query Frame = 0

Query: 75  RIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKARMMKEKREKEEADRIEREAA 134
           ++R+K + E+RAL EERA ++E+RI+EDEER N+ER HK  MM+EKR+KE  +  E+E  
Sbjct: 12  QMRRKMRNEERALCEERAWRKEQRIKEDEERTNKERAHKTCMMEEKRKKEAKETREKEKT 71

Query: 135 RKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEKLGEKVERVATKYKTTE 194
            +ED+  R+  KEK+++V SL E K+KLAKIQT KK KQEKL  L E+V+ VA + K  +
Sbjct: 72  HEEDERLRQTFKEKKKNVKSLTETKTKLAKIQTSKKKKQEKLTGLSEQVDSVAARCKVAK 131

BLAST of CsaV3_6G015440 vs. NCBI nr
Match: KAA0053403.1 (hypothetical protein E6C27_scaffold428G00710 [Cucumis melo var. makuwa])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-11
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 0

Query: 75  RIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKARMMKEKREKEEADRIEREAA 134
           ++R+K + E+RAL EE A ++E+RI+EDEER N+ER HK  MM+EKR+KE  +  E+E  
Sbjct: 12  QMRRKMRNEERALCEEWAWRKEQRIKEDEERTNKERAHKTCMMEEKRKKEAKETREKEKT 71

Query: 135 RKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEKLGEKVERVATKYKTTE 194
            +ED+  R+  KEK+++V SL E K+KLAKIQT KK KQEKL  L E+V+ VA + K  +
Sbjct: 72  HEEDERLRQTFKEKKKNVKSLTETKTKLAKIQTSKKKKQEKLTGLSEQVDSVAARCKVAK 131

BLAST of CsaV3_6G015440 vs. NCBI nr
Match: KGN51420.1 (hypothetical protein Csa_008540 [Cucumis sativus])

HSP 1 Score: 67.4 bits (163), Expect = 1.6e-07
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 56  KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 115
           +V E TKR+VEEKN ED ERIRKK K+E+RAL EERARKEEERI+EDEERRNRE +HKA+
Sbjct: 45  QVAENTKREVEEKNMEDAERIRKK-KEEERALCEERARKEEERIKEDEERRNREGLHKAQ 104

Query: 116 MMKEKRE 123
            MK+K+E
Sbjct: 105 TMKKKKE 110

BLAST of CsaV3_6G015440 vs. NCBI nr
Match: KAA0067088.1 (hypothetical protein E6C27_scaffold38G001420 [Cucumis melo var. makuwa] >TYK26323.1 hypothetical protein E5676_scaffold14G001050 [Cucumis melo var. makuwa])

HSP 1 Score: 60.5 bits (145), Expect = 1.9e-05
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 107 NRERIHKARMMKEKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQ 166
           NRE  H ARMM+EKR+K+  +R E+E AR+++   R+  KEK+++V S  E K+KLA+IQ
Sbjct: 3   NRECAHNARMMEEKRKKKTEERREKEKAREKNGLLRQTFKEKKKNVLSSMEVKTKLAEIQ 62

Query: 167 TPKKMKQEKLEKLGEKVERVATKYKTTE 195
             KK KQE +  L E VE VA + K  E
Sbjct: 63  NAKKKKQEMIVSLSEHVESVAARSKVVE 90

BLAST of CsaV3_6G015440 vs. ExPASy TrEMBL
Match: A0A0A0KDX1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G160700 PE=4 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 8.3e-47
Identity = 125/128 (97.66%), Postives = 127/128 (99.22%), Query Frame = 0

Query: 56  KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 115
           KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR
Sbjct: 22  KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 81

Query: 116 MMKEKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEK 175
           MMKEKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEK
Sbjct: 82  MMKEKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEK 141

Query: 176 LEKLGEKV 184
           LEKL ++V
Sbjct: 142 LEKLDDRV 149

BLAST of CsaV3_6G015440 vs. ExPASy TrEMBL
Match: A0A5D3CVJ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold637G00630 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-12
Identity = 63/120 (52.50%), Postives = 88/120 (73.33%), Query Frame = 0

Query: 75  RIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKARMMKEKREKEEADRIEREAA 134
           ++R+K + E+RAL EERA ++E+RI+EDEER N+ER HK  MM+EKR+KE  +  E+E  
Sbjct: 12  QMRRKMRNEERALCEERAWRKEQRIKEDEERTNKERAHKTCMMEEKRKKEAKETREKEKT 71

Query: 135 RKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEKLGEKVERVATKYKTTE 194
            +ED+  R+  KEK+++V SL E K+KLAKIQT KK KQEKL  L E+V+ VA + K  +
Sbjct: 72  HEEDERLRQTFKEKKKNVKSLTETKTKLAKIQTSKKKKQEKLTGLSEQVDSVAARCKVAK 131

BLAST of CsaV3_6G015440 vs. ExPASy TrEMBL
Match: A0A5A7UBY9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00710 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.1e-11
Identity = 62/120 (51.67%), Postives = 87/120 (72.50%), Query Frame = 0

Query: 75  RIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKARMMKEKREKEEADRIEREAA 134
           ++R+K + E+RAL EE A ++E+RI+EDEER N+ER HK  MM+EKR+KE  +  E+E  
Sbjct: 12  QMRRKMRNEERALCEEWAWRKEQRIKEDEERTNKERAHKTCMMEEKRKKEAKETREKEKT 71

Query: 135 RKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQTPKKMKQEKLEKLGEKVERVATKYKTTE 194
            +ED+  R+  KEK+++V SL E K+KLAKIQT KK KQEKL  L E+V+ VA + K  +
Sbjct: 72  HEEDERLRQTFKEKKKNVKSLTETKTKLAKIQTSKKKKQEKLTGLSEQVDSVAARCKVAK 131

BLAST of CsaV3_6G015440 vs. ExPASy TrEMBL
Match: A0A0A0KP73 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534980 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 7.6e-08
Identity = 50/67 (74.63%), Postives = 59/67 (88.06%), Query Frame = 0

Query: 56  KVVEKTKRDVEEKNKEDEERIRKKRKKEKRALREERARKEEERIREDEERRNRERIHKAR 115
           +V E TKR+VEEKN ED ERIRKK K+E+RAL EERARKEEERI+EDEERRNRE +HKA+
Sbjct: 45  QVAENTKREVEEKNMEDAERIRKK-KEEERALCEERARKEEERIKEDEERRNREGLHKAQ 104

Query: 116 MMKEKRE 123
            MK+K+E
Sbjct: 105 TMKKKKE 110

BLAST of CsaV3_6G015440 vs. ExPASy TrEMBL
Match: A0A5D3DRS5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G001050 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 9.2e-06
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 0

Query: 107 NRERIHKARMMKEKREKEEADRIEREAARKEDKCFRKISKEKRQSVTSLAEAKSKLAKIQ 166
           NRE  H ARMM+EKR+K+  +R E+E AR+++   R+  KEK+++V S  E K+KLA+IQ
Sbjct: 3   NRECAHNARMMEEKRKKKTEERREKEKAREKNGLLRQTFKEKKKNVLSSMEVKTKLAEIQ 62

Query: 167 TPKKMKQEKLEKLGEKVERVATKYKTTE 195
             KK KQE +  L E VE VA + K  E
Sbjct: 63  NAKKKKQEMIVSLSEHVESVAARSKVVE 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646926.18.9e-88100.00hypothetical protein Csa_020807 [Cucumis sativus][more]
TYK15883.12.7e-1252.50hypothetical protein E5676_scaffold637G00630 [Cucumis melo var. makuwa][more]
KAA0053403.12.3e-1151.67hypothetical protein E6C27_scaffold428G00710 [Cucumis melo var. makuwa][more]
KGN51420.11.6e-0774.63hypothetical protein Csa_008540 [Cucumis sativus][more]
KAA0067088.11.9e-0548.86hypothetical protein E6C27_scaffold38G001420 [Cucumis melo var. makuwa] >TYK2632... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KDX18.3e-4797.66Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G160700 PE=4 SV=1[more]
A0A5D3CVJ51.3e-1252.50Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UBY91.1e-1151.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0KP737.6e-0874.63Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G534980 PE=4 SV=1[more]
A0A5D3DRS59.2e-0648.86Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 169..189
NoneNo IPR availableCOILSCoilCoilcoord: 55..107
NoneNo IPR availableCOILSCoilCoilcoord: 117..139
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 88..106
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..135
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..106

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G015440.1CsaV3_6G015440.1mRNA