CsaV3_6G014220 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G014220
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	50S ribosomal protein L18
Location	chr6: 10344932 .. 10345318 (+)
RNA-Seq Expression	CsaV3_6G014220
Synteny	CsaV3_6G014220

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACAGTAAGAAAGTCCTATGTGCTACGGTTATTCATATCTTTGAAGTGCATGACAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAACTGCATCCACAGTCGAACACTCCATCCAAGGCTCACTTGAATGTGGCCGGTCTTGCAATGCTAAGGCAGCAGCCATTGTTGGAGAGGTGTTGGCTACGTGACTCAAAGTCGATGGTCTCAGACAGGGGCAAGGAAGAGGCATTCATGCAGACATAAACAAGGAAATCGAGAAGAAAGGATTTAAAAACGGCACAAAAATCTGGGCTATAGTGAATTCGCTCAAGAATAACAGAGTTAAACGTATACTCGACAACAATGTTGACGAGCCATCTCGGTTGAGCTCTCAATAA

mRNA sequence

ATGACAGTAAGAAAGTCCTATGTGCTACGGTTATTCATATCTTTGAAGTGCATGACAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAACTGCATCCACAGTCGAACACTCCATCCAAGGCTCACTTGAATGTGGCCGACAGGGGCAAGGAAGAGGCATTCATGCAGACATAAACAAGGAAATCGAGAAGAAAGGATTTAAAAACGGCACAAAAATCTGGGCTATAGTGAATTCGCTCAAGAATAACAGAGTTAAACGTATACTCGACAACAATGTTGACGAGCCATCTCGGTTGAGCTCTCAATAA

Coding sequence (CDS)

ATGACAGTAAGAAAGTCCTATGTGCTACGGTTATTCATATCTTTGAAGTGCATGACAGCTAATGTGGTAGATAGAAATAATGGACGGATTGTCGCAACTGCATCCACAGTCGAACACTCCATCCAAGGCTCACTTGAATGTGGCCGACAGGGGCAAGGAAGAGGCATTCATGCAGACATAAACAAGGAAATCGAGAAGAAAGGATTTAAAAACGGCACAAAAATCTGGGCTATAGTGAATTCGCTCAAGAATAACAGAGTTAAACGTATACTCGACAACAATGTTGACGAGCCATCTCGGTTGAGCTCTCAATAA

Protein sequence

MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGRQGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVDEPSRLSSQ*

Homology

[Close]

BLAST of CsaV3_6G014220 vs. NCBI nr
Match: KGN46868.1 (hypothetical protein Csa_020822 [Cucumis sativus])

HSP 1 Score: 205.7 bits (522), Expect = 2.0e-49
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGRQGQGRGIHADI 60
           MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGRQGQGRGIHADI
Sbjct: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGRQGQGRGIHADI 60

Query: 61  NKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVDEPSRLSSQ 105
           NKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVDEPSRLSSQ
Sbjct: 61  NKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVDEPSRLSSQ 104

[Close]

BLAST of CsaV3_6G014220 vs. NCBI nr
Match: XP_038901007.1 (uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901009.1 uncharacterized protein LOC120088052 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.3e-36
Identity = 90/128 (70.31%), Postives = 95/128 (74.22%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YVLRLFISLK +TANVVDRNNGRIVATASTVEHSI+GSLECGR           
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 105
                        QGQGRGIHAD+NKEIEKKGFKN TKIWAIVN+LKNN VK ILDNNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADVNKEIEKKGFKNRTKIWAIVNALKNNGVKLILDNNVD 120

[Close]

BLAST of CsaV3_6G014220 vs. NCBI nr
Match: XP_022943852.1 (uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943854.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943855.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943856.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943857.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943858.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943860.1 uncharacterized protein LOC111448460 [Cucurbita moschata] >KAG7010651.1 rplR, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 156.0 bits (393), Expect = 1.8e-34
Identity = 88/126 (69.84%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YV+RLFISLK +TANVVDRNNGRIVATASTVEHSI+GSLECGR           
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 103
                        QGQGRGIH DINKEIEKKGFKN TKIWAIVNSLKNN VK ILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

[Close]

BLAST of CsaV3_6G014220 vs. NCBI nr
Match: XP_023511782.1 (uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511784.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511785.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511786.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511787.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511788.1 uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 155.6 bits (392), Expect = 2.3e-34
Identity = 87/126 (69.05%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YV+RLFISLK +TANVVDRNNGRIVATASTVEHSI+GSLECGR           
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 103
                        QGQGRGIH D+NKEIEKKGFKN TKIWAIVNSLKNN VK ILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDVNKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

[Close]

BLAST of CsaV3_6G014220 vs. NCBI nr
Match: TYK06187.1 (50S ribosomal protein L18 [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-34
Identity = 86/127 (67.72%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YVLRLFISLK +TANVVDRNNGR+VATASTVEHSI+ SLECGR           
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 104
                        QGQGRGIHADINKEIEKKGF+N TKIWAIVNSLKNN VK ILDNNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILDNNVD 120

[Close]

BLAST of CsaV3_6G014220 vs. ExPASy TrEMBL
Match: A0A0A0KBG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147610 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.6e-50
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGRQGQGRGIHADI 60
           MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGRQGQGRGIHADI
Sbjct: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGRQGQGRGIHADI 60

Query: 61  NKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVDEPSRLSSQ 105
           NKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVDEPSRLSSQ
Sbjct: 61  NKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVDEPSRLSSQ 104

[Close]

BLAST of CsaV3_6G014220 vs. ExPASy TrEMBL
Match: A0A6J1FXG0 (uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC111448460 PE=4 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 8.7e-35
Identity = 88/126 (69.84%), Postives = 92/126 (73.02%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YV+RLFISLK +TANVVDRNNGRIVATASTVEHSI+GSLECGR           
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 103
                        QGQGRGIH DINKEIEKKGFKN TKIWAIVNSLKNN VK ILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

[Close]

BLAST of CsaV3_6G014220 vs. ExPASy TrEMBL
Match: A0A5D3C2Z2 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold287G00440 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 86/127 (67.72%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YVLRLFISLK +TANVVDRNNGR+VATASTVEHSI+ SLECGR           
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 104
                        QGQGRGIHADINKEIEKKGF+N TKIWAIVNSLKNN VK ILDNNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILDNNVD 120

[Close]

BLAST of CsaV3_6G014220 vs. ExPASy TrEMBL
Match: A0A6J1JBQ5 (uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 4.3e-34
Identity = 87/126 (69.05%), Postives = 91/126 (72.22%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YV+RLFISLK +TANVVDRNNGRIVATASTVEHSI+GSLECGR           
Sbjct: 1   MTVLKRYVVRLFISLKYITANVVDRNNGRIVATASTVEHSIKGSLECGRSCNAKAAAVVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 103
                        QGQGRGIH DINKEIEKKGFKN TKIWAIVNSLKNN VK ILDNN D
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHMDINKEIEKKGFKNRTKIWAIVNSLKNNGVKLILDNNDD 120

[Close]

BLAST of CsaV3_6G014220 vs. ExPASy TrEMBL
Match: A0A5A7SM55 (50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold653G00440 PE=4 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 5.6e-34
Identity = 85/127 (66.93%), Postives = 93/127 (73.23%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YVLRLFISLK +TANVVDRNNGR+VATASTVEHSI+ SLECGR           
Sbjct: 1   MTVLKRYVLRLFISLKYITANVVDRNNGRVVATASTVEHSIKNSLECGRSCNAKAAAIVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 104
                        QGQGRGIHADINKEIEKKGF+N TKIWAIVNSLKNN VK IL+NNVD
Sbjct: 61  EVLAMRLKVDGLEQGQGRGIHADINKEIEKKGFRNRTKIWAIVNSLKNNGVKLILNNNVD 120

[Close]

BLAST of CsaV3_6G014220 vs. TAIR 10
Match: AT3G45020.1 (Ribosomal L18p/L5e family protein )

HSP 1 Score: 133.3 bits (334), Expect = 1.2e-31
Identity = 71/121 (58.68%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MTVRKSYVLRLFISLKCMTANVVDRNNGRIVATASTVEHSIQGSLECGR----------- 60
           MTV K YVLRLF+S+K +TANVVDRNNGRIV TASTVEH+I+ SLECGR           
Sbjct: 1   MTVLKRYVLRLFMSIKYITANVVDRNNGRIVTTASTVEHTIKNSLECGRTCNAKAAAIVG 60

Query: 61  -------------QGQGRGIHADINKEIEKKGFKNGTKIWAIVNSLKNNRVKRILDNNVD 98
                         GQGRGIHAD+ KEIEKKGFK+ TK+WA++NSL+NN V  ILD++ D
Sbjct: 61  EVLAMRLKVEGLQDGQGRGIHADVKKEIEKKGFKSRTKVWAVINSLRNNGVTLILDDDDD 120

The following BLAST results are available for this feature:

BLAST of CsaV3_6G014220 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46868.1	2.0e-49	100.00	hypothetical protein Csa_020822 [Cucumis sativus]	[more]
XP_038901007.1	4.3e-36	70.31	uncharacterized protein LOC120088052 [Benincasa hispida] >XP_038901008.1 unchara...	[more]
XP_022943852.1	1.8e-34	69.84	uncharacterized protein LOC111448460 [Cucurbita moschata] >XP_022943853.1 unchar...	[more]
XP_023511782.1	2.3e-34	69.05	uncharacterized protein LOC111776697 [Cucurbita pepo subsp. pepo] >XP_023511783....	[more]
TYK06187.1	3.1e-34	67.72	50S ribosomal protein L18 [Cucumis melo var. makuwa]	[more]

BLAST of CsaV3_6G014220 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G014220 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBG9	9.6e-50	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G147610 PE=4 SV=1	[more]
A0A6J1FXG0	8.7e-35	69.84	uncharacterized protein LOC111448460 OS=Cucurbita moschata OX=3662 GN=LOC1114484...	[more]
A0A5D3C2Z2	1.5e-34	67.72	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1JBQ5	4.3e-34	69.05	uncharacterized protein LOC111483610 OS=Cucurbita maxima OX=3661 GN=LOC111483610...	[more]
A0A5A7SM55	5.6e-34	66.93	50S ribosomal protein L18 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]

BLAST of CsaV3_6G014220 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G45020.1	1.2e-31	58.68	Ribosomal L18p/L5e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.420.100		coord: 1..88 e-value: 6.7E-7 score: 31.7
None	No IPR available	PANTHER	PTHR12899:SF12	OS09G0549700 PROTEIN	coord: 52..99
None	No IPR available	PANTHER	PTHR12899:SF12	OS09G0549700 PROTEIN	coord: 1..50
None	No IPR available	SUPERFAMILY	53137	Translational machinery components	coord: 6..85
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 52..99
IPR005484	Ribosomal protein L18	PANTHER	PTHR12899	39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL	coord: 1..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G014220.1	CsaV3_6G014220.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome