CsaV3_6G014010 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G014010
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	exosome complex component RRP41-like
Location	chr6: 10204862 .. 10209042 (-)
RNA-Seq Expression	CsaV3_6G014010
Synteny	CsaV3_6G014010

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGAATTAAGCCCTTGTCTGGCGCCCTCACCCGCTTCCAAGGTTCAATTTCCCAATCGTTGGCTCCTCGGTCTCTACCATAACACACAACTCTTTTCGATCTCTTTCAACTCTTAATAGCCCGTTCTCTAAACCGATCGATTCTGGGTTTTTGTGTTCATTGCCTTGACGGCCTCAGGTACCTTTTTTTTTTGCATTAATTATAGGTTTTGAACCCTAAATTCTGGTTTTGTTTGCCAGTTTTCTTTTGCCGAAATGTAGTTTTTTCTTTTTTTGTGTGTGTATTTTTCCATGGAGATTAGCTACTGAGGCCCTTCCATTGTGTGCCAAACCTCAGGAAATTTGTGGCGGAGCCTTCTAACTTGTCAACGGAGTCATTCATTGGCGTTCTAAATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTGTATGTCTATCTTGCCCATTTCTGTTTTTCTCATTTGCTCTGTCTTGCTGCTTTTCACATTATATCGTTATGTTATTGTTTCATTTAATGTCTATTTGAGGTTATTGTTTCTAATTGCTGCTAGTTTGAGGTTATTGTTCTCGATCAGTTTATCATAAGTACTAAGCACCCTCGCATTATTTCTGCTGTCTCAATCTTGTGACCACGTTATCAAATTTGCTCTGTATTTGTATGCTTATGATGTCTTTTCCATGATGATGGTCCTGTTGAGGATCCCACGTGGAGATAGATGAGCTACTTCTCCCACTCCCAATTTATTTTGAGAGATGGAGCCACGTTATCTAATAGGCTTGAGAATCGTTGTTTATCTAATAGCCATGTTATCTTAGTTTATTGATGGAAAAATTGGTTGATGCCATGATCTTAATAAATAAGCGTTAACTGAGAAGTAGGAAATGACATGGTTAAGAATGTGTTATCTTGTCTTTCGACATTGAAGTCTAACTGGAAGGTTCTCCCTTTGATTCGATTCAGTTAGTAGTTGATCATAGAGTCCTTGAGGATTTTGAACATATGTTGTTTTACTTGGTGGTTTTGACATTTCTGTTGTTAAATCTTGGACAAATATCATCTGTTTAGAAACCAAACTTGTCATTCCTTTGCAGTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTGTAAGTTCTAGCTTACCTCCGACTCCAAGTATGTGCTCTTTGTGACTTCTAGGTTTCTCTTTGATGATGAGAGTTTGAGCACCAGTGCCTAATCCAATTGGTTGCCCATTTGATGAACTTGCTATTCCTTTCCTTTAATCATTTAAATCATTAGTATTTTGTGTCCAGTTTCCTTTCTTTATTCAAATGCTGTATTCTTTGCATCAGATTTGGCCCCAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGTGTGAAGATACCCCTCTTCTTCTATTTCGTTTATATCTTTTTACTGTTGTCATTTGACTATCTCATTTTGTCTTGACTTCATTTGTTAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTAAGTAGAGGATTTTTTTTTATGTGTTTGATCTATAAGACGAATTTACCGTGAAGAAGATAGATTATTACAGTTAATGAATATGAACCAGTATTCAAAGCTTATTTGCATGTGGGAGTACGATGACTCGTAATTTTGAAGTATAACAAACTAAGACCATTTTGAGAAGATTCAAAAGTAACATGTTTTAATCTCATTACACTATGGAAACTTTCAGTTGCTGGTTATTCTTTCTTTAAAACAATGGTCCATTAGCTAAGTGGAGAATGTTGGTTATTTTTTTGGGCTGCATAACTATTTGTTATCAATGGCTTTCATGCCAAGGTATCTGTAAGACCCCCAATTATCCATACTTATAGGAGGAAGGGTAGAAAAGTAACTGCACAGGGAATTATTATGGAGAAATGATTGGAAGGACGTTCTGAGTGGTAGGGCCCACTGGGCTGAGGAATATGTGAGTCTATAAATAGGATTATTAGGTTGGAGTAGCTAGGGTATTTTTATCTTTTAGGAGGTAGGGCTACAGCAGCCACCAGGGTCTCTTAAAACCAAGAGGCTGGTATGATCTTTTCTGCATTTTTCCTTGTTGTTTCTTGTTATTTCTTTTCATCTTGTGAATCTGGATCATTTGGCTTTATATATAAATAAAGTAAACCAGAGTACCGCCTCTGTTTAAGCCATTTATACAGTCCTTTCGGTCTAAATTATTGTTAGTATCCTAACAGTATCCATGATGTACTTTCTTTCCGTACTGGCATCAAGTTGGAACCAGATCCAACCATTATTCTCCGTATGCAACTAAGGTTACCTTTTCTCTAGATTGATATTCTGTTGTTGCAGGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGGTATGCATGTGCACATTCTCAACTGTCCTGTTTCTTCTATAACTAATTTTGTATTTCTAGCATTAAGCCTATCCTCAACATGCATTTGATTTTGCTAAGTTTATCATGCGTTCTCTTTCCATTCAACTAGCTTTTTGGTTACAAAGGGTTATGCAAGTATACAGTTATTCAGGTTGCTGATAATTGAATCCTAAAAGTAGGAGATTGTAGTTCTCTGTGTTCTGGCCTATTTTCTCCTCTCTGCAACTGAGGAAGATATTTTTCCGCACAAAATGACCTTTCGCATTGGCTGTCTTGATTGCAGAACTTCATTTTTTAAAAAAGAATTTGGGTTCTGTTTCCAACATAAGGCACTGATGGATCTTTATTCTATTATGATTATGTAACTCTCGGTGTCTACCATACGAATTACCATTTTAAGTTCTAATACATTACTCTCATATGTTAACTAGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGTAAAGCATCAACTCTTAACTTCACATTCATTTTGAAGAAAGTTTTTAGTACTAAAACAGCATCTGATAATGGTTTTTCTTGTTTGTTTGTTTTTATTACCACAAAAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAAAAAGAGTGATGTCTAATGTCTCTTTTTAGTTTTAGTACGGAAATCTCAACACCACCCCTTCCCCTTCCATCCCCAATTTTGATGAGAAAGAAAAATATGTAAAATCTTTGGAAAATGGTTGATTTGGATTTTGCATCAAAGTAAAAAGTAGCAGAGAAGTATTCATTGGTTGGTGGCTGACCACAGTAAAAAACAACTCCAATGGCTGAAGAAGCAAAGTTGACTTGAAACCTCTTTTTCCTTTTTTTTTTCTTTTCCTTTTGGTTTTTTAGCGTTGGTAAGTCAAGTCAAAAGCCTTATCCTCCTACTTCTACGGTTCTACCACGCTCCATTTTGAAGTCTATTCTCTAGTCAAAGTCTATTTCATTCTTTGTATTTTTTTTTTTTCTTTTTGAAATGTTTAGTTATGATCCTTTTAACACATGGATTCCATAGAGGCAAACAAAGCCATTGACTATACTCTCTCGATTCTTGTTTTGCAAAATCCTAGTACAAGTTAACATGGGATTCCAAAGCTTATGTAAGCTTTGACTTATTCCTTTGAAGATTTCTCTCTGCCTTATCTTCTCTTAAATATCCACTCTTTGTAATTTTTATACGAAAAATCATTTGTATACCATATATTTCATTGGGAGAAGCTTTAATTGGAC

mRNA sequence

ATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTATTTGGCCCCAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAA

Coding sequence (CDS)

ATGGCCAAAAAAGCGACACCAACTACCACAACGTATTCTCCGTCTCCTACTGTCCACAAAACCAGGCCATCCCTCTTCAGAACCGATGACGTCAACTGGGTTCGCCCCGATGGCCGTGGCTTCCATCAATGCCGCCCTGCTTTTTTCAGGACTGGAGCTGTAAATGCTGCTTCAGGATCTGCTTATGCAGAATTCGGTAATACCAAGGTCATTGTTTCTGTATTTGGCCCCAGAGAAAGTAAGAAAGCAATGATGTACAGTGATATTGGCCGGCTCAATTGTAGTGTTAGTTATACAACATTTTCCACTCCAGTTCGTGGACAGGGATCGGAAAACAAGGACTTCTCCTCAATGTTACATAAATCTTTGGAAGGGGCAATAATATTGGAATCATTCCCCAAAACAACAGTGGACGTATTTGCCTTGGTGTTGGAATCTGGAGGCAGTGATCTTCCTGTTGTAATATCATGTGCCAGTCTTGCTCTTGCTGATGCTGGAATTATGCTTTATGATCTTGTTGCCTCAGTTTCTGTGAGCTGCTTTGGCAAGAATCTTCTTATTGATACTGTTTTGGAAGAAGAAAACTACCAAGATGGAAGTCTTATGATAACTTGTATGCCATCTCGTTACGAAGTCACTCAGCTCACAATCACAGGTGAATGGACAACTTCTAAAATTAATGAGGGTATGCAACTTTGCCTTGATGCTTCATGCAAGCTTGTGGAGATCATGAGATCATGCTTGAAGGAATCTGCCGTCACCATTTCAGAGGAATAA

Protein sequence

MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISEE*

Homology

[Close]

BLAST of CsaV3_6G014010 vs. NCBI nr
Match: XP_004145749.1 (exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical protein Csa_020883 [Cucumis sativus])

HSP 1 Score: 508.8 bits (1309), Expect = 2.7e-140
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 259
           VEIMRSCLKESAVTISEE
Sbjct: 241 VEIMRSCLKESAVTISEE 258

[Close]

BLAST of CsaV3_6G014010 vs. NCBI nr
Match: XP_008463959.1 (PREDICTED: exosome complex component RRP41-like [Cucumis melo])

HSP 1 Score: 495.4 bits (1274), Expect = 3.1e-136
Identity = 252/259 (97.30%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MAKKATP-TTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP TTTTYSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAVTISEE 259
           LVEIMRSCLKESA TISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]

BLAST of CsaV3_6G014010 vs. NCBI nr
Match: XP_038900607.1 (exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900608.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_038900609.1 exosome complex component RRP41-like isoform X1 [Benincasa hispida])

HSP 1 Score: 481.9 bits (1239), Expect = 3.5e-132
Identity = 242/258 (93.80%), Postives = 251/258 (97.29%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPT+ KTRP +FRT DV+WVR DGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTIQKTRPPIFRTGDVDWVRSDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAI+LE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPTLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 259
           VEIMRSCLKESA TISEE
Sbjct: 241 VEIMRSCLKESAATISEE 258

[Close]

BLAST of CsaV3_6G014010 vs. NCBI nr
Match: KAG6570792.1 (Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 480.7 bits (1236), Expect = 7.9e-132
Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 259
           V IMRSCLKESA T+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of CsaV3_6G014010 vs. NCBI nr
Match: XP_022986160.1 (exosome complex component RRP41-like [Cucurbita maxima])

HSP 1 Score: 480.7 bits (1236), Expect = 7.9e-132
Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 259
           V IMRSCLKESA T+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy Swiss-Prot
Match: A2RVK7 (Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L PE=2 SV=1)

HSP 1 Score: 372.9 bits (956), Expect = 3.0e-102
Identity = 185/257 (71.98%), Postives = 218/257 (84.82%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MA K    T TYSP   V ++R  +F+  D++W RPDGRGFHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++K++SSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEG I++E+FPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC
Sbjct: 121 KALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
            GK+L+ID V EEE  +DGS M+TCMPSRYE+TQLTITGEWTT  INE MQLCLDAS KL
Sbjct: 181 IGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKL 240

Query: 241 VEIMRSCLKESAVTISE 258
            EIMR CLK+SA    E
Sbjct: 241 GEIMRDCLKQSASASDE 256

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy Swiss-Prot
Match: Q6P0I8 (Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2)

HSP 1 Score: 135.6 bits (340), Expect = 8.1e-31
Identity = 84/222 (37.84%), Postives = 121/222 (54.50%), Query Frame = 0


Query: 39  RGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRES-KKAMMYSDIGRLNCSVS 98
           RG    RP F R G V+ A GSAY E GNTK+I SV+GP+E+ ++       GRL C   
Sbjct: 37  RGNGDVRPVFARCGLVSQAKGSAYIEAGNTKIICSVYGPKETERRDETDMKTGRLVCDFR 96

Query: 99  YTTFSTPVRG---QGSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPVV 158
              FS   RG   QGSE +D S+ L +SL   + L  +P++ +DV  +VLE+ GS L   
Sbjct: 97  LAPFSCVKRGAWIQGSEERDLSATLMESLRPGVCLHRYPRSQIDVNVMVLENDGSVLAHA 156

Query: 159 ISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEE------ENYQD--GSLMITCM 218
           ++CAS+ALADAGI +YD+V   ++   G   L+D    E      E Y D  G + +  +
Sbjct: 157 VTCASMALADAGIEMYDIVLGCTLRQSGNACLVDPSYAEECGSWQEGYGDNQGCVTLALL 216

Query: 219 PSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCL 249
           P+  +V+ L   GE     + E M+ C+D   KL  +++  L
Sbjct: 217 PNLNQVSGLNADGEMREDTLTEAMRTCMDGCHKLYPVVQQAL 258

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy Swiss-Prot
Match: Q8U0L9 (Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) OX=186497 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 3.4e-29
Identity = 81/241 (33.61%), Postives = 128/241 (53.11%), Query Frame = 0


Query: 22  RPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRLDGRKKYELRPIKMKVGVLKNANGSAYIEWGKNKIIAAVYGPREIH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIRGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQ 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ S       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACSAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE  + I++
Sbjct: 184 EADVPVAIMPIKNDITLLQMDGYLTKEEFIEAVKLAIKGAKAVYQKQREALKEKYLKIAQ 243

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy Swiss-Prot
Match: O59223 (Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) OX=70601 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 5.8e-29
Identity = 80/241 (33.20%), Postives = 129/241 (53.53%), Query Frame = 0


Query: 22  RPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP   + G +  A+GSAY E+G  K+I +V+GPRE  
Sbjct: 4   KPEGLKLIDENGRRIDGRKKYELRPIKMKVGVLKNANGSAYIEWGRNKIIAAVYGPRELH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T++
Sbjct: 64  SKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSIEISKVIKGALEPALILEMFPRTSI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQ 201
           DVF  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DVFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE  + I++
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTKEEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAQ 243

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy Swiss-Prot
Match: B6YSI2 (Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=523850 GN=rrp41 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 9.9e-29
Identity = 79/241 (32.78%), Postives = 126/241 (52.28%), Query Frame = 0


Query: 22  RPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE-S 81
           +P   +  D N  R DGR  ++ RP     G +  A GSAY E+G  K++ +V+GPRE  
Sbjct: 4   KPEDLKLIDENGRRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKILAAVYGPREIH 63

Query: 82  KKAMMYSDIGRLNCSVSYTTFSTPVR---GQGSENKDFSSMLHKSLEGAIILESFPKTTV 141
            K +   D   L    +   FS   R   G    + + S ++  +LE A+ILE FP+T +
Sbjct: 64  PKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPRTAI 123

Query: 142 DVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQ 201
           D+F  VL++        I+ ASLALADAGI + DLVA+ +       +++D   EE+NY 
Sbjct: 124 DIFIEVLQADAGTRVAGITAASLALADAGIPMRDLVAACAAGKIEGEIVLDLNKEEDNYG 183

Query: 202 DGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKESAVTISE 259
           +  + +  MP + ++T L + G  T  +  E ++L +  +  + +  R  LKE  + I+E
Sbjct: 184 EADVPVAIMPLKNDITLLQMDGYLTRDEFIEAVRLAIKGAKAVYQKQREALKEKYLKIAE 243

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy TrEMBL
Match: A0A0A0KEK6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1)

HSP 1 Score: 508.8 bits (1309), Expect = 1.3e-140
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 259
           VEIMRSCLKESAVTISEE
Sbjct: 241 VEIMRSCLKESAVTISEE 258

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy TrEMBL
Match: A0A1S3CKF3 (exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=4 SV=1)

HSP 1 Score: 495.4 bits (1274), Expect = 1.5e-136
Identity = 252/259 (97.30%), Postives = 255/259 (98.46%), Query Frame = 0


Query: 1   MAKKATP-TTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60
           MAKKATP TTTTYSPSPTVHKTRP LFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG
Sbjct: 1   MAKKATPTTTTTYSPSPTVHKTRPPLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASG 60

Query: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSML 120
           SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSML
Sbjct: 61  SAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSML 120

Query: 121 HKSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180
           HKSLEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS
Sbjct: 121 HKSLEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVS 180

Query: 181 CFGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240
           CFGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK
Sbjct: 181 CFGKNLLIDPILEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCK 240

Query: 241 LVEIMRSCLKESAVTISEE 259
           LVEIMRSCLKESA TISEE
Sbjct: 241 LVEIMRSCLKESAATISEE 259

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy TrEMBL
Match: A0A6J1JDA9 (exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 3.8e-132
Identity = 240/258 (93.02%), Postives = 250/258 (96.90%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP T+TYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATSTYSPSPTTHKTRPPIFRSDDVDWVRPDGRAFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 259
           V IMRSCLKESA T+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy TrEMBL
Match: A0A6J1FYV1 (exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC111449089 PE=4 SV=1)

HSP 1 Score: 480.7 bits (1236), Expect = 3.8e-132
Identity = 240/258 (93.02%), Postives = 249/258 (96.51%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT HKTRP +FR+DDV+WVRPDGR FHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTTHKTRPPIFRSDDVDWVRPDGRSFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAII E+FPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIIFETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID  LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPALEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 259
           V IMRSCLKESA T+SEE
Sbjct: 241 VTIMRSCLKESAATVSEE 258

[Close]

BLAST of CsaV3_6G014010 vs. ExPASy TrEMBL
Match: A0A6J1CHT0 (exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011303 PE=4 SV=1)

HSP 1 Score: 475.7 bits (1223), Expect = 1.2e-130
Identity = 237/258 (91.86%), Postives = 253/258 (98.06%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MAKKATP TTTYSPSPT+HKTRP +FR+D+ +WVRPDGRGFHQCRPAFFRTGAVNAASGS
Sbjct: 1   MAKKATPATTTYSPSPTIHKTRPPIFRSDEADWVRPDGRGFHQCRPAFFRTGAVNAASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTF+TPVRGQGSENK+FSSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFATPVRGQGSENKEFSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEGAIILE+FPKTTVD+FALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC
Sbjct: 121 KALEGAIILETFPKTTVDIFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
           FGKNLLID +LEEENYQDGSLMITCMPSRYEVTQLTITGEW+T+KINEGMQLCLDASCKL
Sbjct: 181 FGKNLLIDPMLEEENYQDGSLMITCMPSRYEVTQLTITGEWSTAKINEGMQLCLDASCKL 240

Query: 241 VEIMRSCLKESAVTISEE 259
           V+IMRSCLKESA TIS++
Sbjct: 241 VKIMRSCLKESA-TISQD 257

[Close]

BLAST of CsaV3_6G014010 vs. TAIR 10
Match: AT4G27490.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 372.9 bits (956), Expect = 2.1e-103
Identity = 185/257 (71.98%), Postives = 218/257 (84.82%), Query Frame = 0


Query: 1   MAKKATPTTTTYSPSPTVHKTRPSLFRTDDVNWVRPDGRGFHQCRPAFFRTGAVNAASGS 60
           MA K    T TYSP   V ++R  +F+  D++W RPDGRGFHQCRPA  +TGAV++ASGS
Sbjct: 1   MAAKPGAATPTYSPK-IVGRSRLPIFKDSDLDWSRPDGRGFHQCRPALLQTGAVSSASGS 60

Query: 61  AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCSVSYTTFSTPVRGQGSENKDFSSMLH 120
           AYAEFGNTKVIVSVFGPRESKKAM+YSD+GRLNC+VSYT F++P  GQG+++K++SSMLH
Sbjct: 61  AYAEFGNTKVIVSVFGPRESKKAMVYSDVGRLNCNVSYTNFASPTLGQGTDHKEYSSMLH 120

Query: 121 KSLEGAIILESFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMLYDLVASVSVSC 180
           K+LEG I++E+FPKTTVDVFALVLESGGSDL V+ISCASLALADAGIM+YDL+ +VSVSC
Sbjct: 121 KALEGVIMMETFPKTTVDVFALVLESGGSDLSVLISCASLALADAGIMMYDLITAVSVSC 180

Query: 181 FGKNLLIDTVLEEENYQDGSLMITCMPSRYEVTQLTITGEWTTSKINEGMQLCLDASCKL 240
            GK+L+ID V EEE  +DGS M+TCMPSRYE+TQLTITGEWTT  INE MQLCLDAS KL
Sbjct: 181 IGKSLMIDPVTEEEGCEDGSFMMTCMPSRYEITQLTITGEWTTPNINEAMQLCLDASSKL 240

Query: 241 VEIMRSCLKESAVTISE 258
            EIMR CLK+SA    E
Sbjct: 241 GEIMRDCLKQSASASDE 256

[Close]

BLAST of CsaV3_6G014010 vs. TAIR 10
Match: AT3G61620.1 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-21
Identity = 67/223 (30.04%), Postives = 108/223 (48.43%), Query Frame = 0


Query: 34  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 93
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 94  LNCSVSYTTFSTPVRGQ---GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGG 153
           + C  S   FST  R +      + + S ++ +++E  I+ E  P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 154 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPS 213
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P 
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 214 RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKES 252
             +V+ L +  +           L  +    + E +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]

BLAST of CsaV3_6G014010 vs. TAIR 10
Match: AT3G61620.2 (3'-5'-exoribonuclease family protein )

HSP 1 Score: 99.8 bits (247), Expect = 3.5e-21
Identity = 67/223 (30.04%), Postives = 108/223 (48.43%), Query Frame = 0


Query: 34  VRPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRE--SKKAMMYSDIGR 93
           +R DGR F++ R      G V+ A GSA  E GNTKVI +V+GPRE  +K     +D   
Sbjct: 9   LRLDGRRFNEMRQIVAEVGVVSKADGSAVFEMGNTKVIAAVYGPREIQNKSQQKKNDHAV 68

Query: 94  LNCSVSYTTFSTPVRGQ---GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGG 153
           + C  S   FST  R +      + + S ++ +++E  I+ E  P + +D+F  VL++ G
Sbjct: 69  VLCEYSMAQFSTGDRRRQKFDRRSTELSLVIRQTMEACILTELMPHSQIDIFLQVLQADG 128

Query: 154 SDLPVVISCASLALADAGIMLYDLVASVSVSCFGKNLLIDTVLEEENYQDGSLMITCMPS 213
                 I+ A+LALADAGI + DL  S S        L+D    E++     + +  +P 
Sbjct: 129 GTRSACINAATLALADAGIPMRDLAVSCSAGYLNSTPLLDLNYVEDSAGGADVTVGILPK 188

Query: 214 RYEVTQLTITGEWTTSKINEGMQLCLDASCKLVEIMRSCLKES 252
             +V+ L +  +           L  +    + E +R  L+E+
Sbjct: 189 LDKVSLLQMDAKLPMETFETVFALASEGCKAIAERIREVLQEN 231

[Close]

BLAST of CsaV3_6G014010 vs. TAIR 10
Match: AT3G46210.1 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-10
Identity = 49/163 (30.06%), Postives = 76/163 (46.63%), Query Frame = 0


Query: 35  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 95  SVSYTTFSTPVRGQ-GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPV 154
              +     P  GQ G   K++  +L ++++   +L   P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 155 VISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDTVLEEE 195
            I+ A  AL DAGI +  L  ++   C  +N  L++D    EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

[Close]

BLAST of CsaV3_6G014010 vs. TAIR 10
Match: AT3G46210.2 (Ribosomal protein S5 domain 2-like superfamily protein )

HSP 1 Score: 63.5 bits (153), Expect = 2.8e-10
Identity = 49/163 (30.06%), Postives = 76/163 (46.63%), Query Frame = 0


Query: 35  RPDGRGFHQCRPAFFRTGAVNAASGSAYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNC 94
           R DGR  +Q RP       ++   GSA    G+TKV+ +V+GP+   K    ++      
Sbjct: 5   REDGRTPNQLRPLACSRNILHRPHGSASWSQGDTKVLAAVYGPKAGTKKNENAE------ 64

Query: 95  SVSYTTFSTPVRGQ-GSENKDFSSMLHKSLEGAIILESFPKTTVDVFALVLESGGSDLPV 154
              +     P  GQ G   K++  +L ++++   +L   P TT  V   V+   GS LP 
Sbjct: 65  KACFEVIWKPKSGQIGKVEKEYEMILKRTIQSICVLTVNPNTTTSVIIQVVHDDGSLLPC 124

Query: 155 VISCASLALADAGIMLYDLVASVSVSCFGKN--LLIDTVLEEE 195
            I+ A  AL DAGI +  L  ++   C  +N  L++D    EE
Sbjct: 125 AINAACAALVDAGIPMKHLAVAI-CCCLAENGYLVLDPNKLEE 160

The following BLAST results are available for this feature:

BLAST of CsaV3_6G014010 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145749.1	2.7e-140	100.00	exosome complex component RRP41-like [Cucumis sativus] >KGN46847.1 hypothetical ...	[more]
XP_008463959.1	3.1e-136	97.30	PREDICTED: exosome complex component RRP41-like [Cucumis melo]	[more]
XP_038900607.1	3.5e-132	93.80	exosome complex component RRP41-like isoform X1 [Benincasa hispida] >XP_03890060...	[more]
KAG6570792.1	7.9e-132	93.02	Exosome complex component RRP41-like protein, partial [Cucurbita argyrosperma su...	[more]
XP_022986160.1	7.9e-132	93.02	exosome complex component RRP41-like [Cucurbita maxima]	[more]

BLAST of CsaV3_6G014010 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A2RVK7	3.0e-102	71.98	Exosome complex component RRP41-like OS=Arabidopsis thaliana OX=3702 GN=RRP41L P...	[more]
Q6P0I8	8.1e-31	37.84	Exosome complex component MTR3 OS=Danio rerio OX=7955 GN=exosc6 PE=2 SV=2	[more]
Q8U0L9	3.4e-29	33.61	Exosome complex component Rrp41 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM ...	[more]
O59223	5.8e-29	33.20	Exosome complex component Rrp41 OS=Pyrococcus horikoshii (strain ATCC 700860 / D...	[more]
B6YSI2	9.9e-29	32.78	Exosome complex component Rrp41 OS=Thermococcus onnurineus (strain NA1) OX=52385...	[more]

BLAST of CsaV3_6G014010 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEK6	1.3e-140	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G146430 PE=4 SV=1	[more]
A0A1S3CKF3	1.5e-136	97.30	exosome complex component RRP41-like OS=Cucumis melo OX=3656 GN=LOC103501959 PE=...	[more]
A0A6J1JDA9	3.8e-132	93.02	exosome complex component RRP41-like OS=Cucurbita maxima OX=3661 GN=LOC111483981...	[more]
A0A6J1FYV1	3.8e-132	93.02	exosome complex component RRP41-like OS=Cucurbita moschata OX=3662 GN=LOC1114490...	[more]
A0A6J1CHT0	1.2e-130	91.86	exosome complex component RRP41-like OS=Momordica charantia OX=3673 GN=LOC111011...	[more]

BLAST of CsaV3_6G014010 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G27490.1	2.1e-103	71.98	3'-5'-exoribonuclease family protein	[more]
AT3G61620.1	3.5e-21	30.04	3'-5'-exoribonuclease family protein	[more]
AT3G61620.2	3.5e-21	30.04	3'-5'-exoribonuclease family protein	[more]
AT3G46210.1	2.8e-10	30.06	Ribosomal protein S5 domain 2-like superfamily protein	[more]
AT3G46210.2	2.8e-10	30.06	Ribosomal protein S5 domain 2-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015847	Exoribonuclease, phosphorolytic domain 2	PFAM	PF03725	RNase_PH_C	coord: 171..231 e-value: 9.6E-6 score: 25.5
IPR027408	PNPase/RNase PH domain superfamily	GENE3D	3.30.230.70		coord: 30..255 e-value: 2.0E-59 score: 202.9
IPR001247	Exoribonuclease, phosphorolytic domain 1	PFAM	PF01138	RNase_PH	coord: 43..167 e-value: 4.0E-29 score: 101.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	PANTHER	PTHR11953:SF2	EXOSOME COMPLEX COMPONENT MTR3	coord: 9..252
None	No IPR available	PANTHER	PTHR11953	EXOSOME COMPLEX COMPONENT	coord: 9..252
None	No IPR available	CDD	cd11371	RNase_PH_MTR3	coord: 44..250 e-value: 1.55205E-100 score: 289.851
IPR036345	Exoribonuclease, PH domain 2 superfamily	SUPERFAMILY	55666	Ribonuclease PH domain 2-like	coord: 169..256
IPR020568	Ribosomal protein S5 domain 2-type fold	SUPERFAMILY	54211	Ribosomal protein S5 domain 2-like	coord: 32..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G014010.1	CsaV3_6G014010.1	mRNA