CsaV3_6G013710 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G013710
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 9912150 .. 9912374 (+)
RNA-Seq ExpressionCsaV3_6G013710
SyntenyCsaV3_6G013710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATCTCGGGCAATCTCGAGAACAAGATTGAAAGTAAAAAGGACAATTTGAAGGATCTCGGGGCTATCTCATTATTATGCAGGTCGAGAATGGAGACACGAAAGGATTTAATTGGTGAACTCGGGGTGATCTCAGGTCGATTTTGGTCGGGATCATTAAAAATTTTAGTGATCGATATGTTGGATTTCAGGTGTAAAGACATGCAAAGACTTAAATTTTGA

mRNA sequence

ATGGAGATCTCGGGCAATCTCGAGAACAAGATTGAAAGTAAAAAGGACAATTTGAAGGATCTCGGGGCTATCTCATTATTATGCAGGTCGAGAATGGAGACACGAAAGGATTTAATTGGTGAACTCGGGGTGATCTCAGGTCGATTTTGGTCGGGATCATTAAAAATTTTAGTGATCGATATGTTGGATTTCAGGTGTAAAGACATGCAAAGACTTAAATTTTGA

Coding sequence (CDS)

ATGGAGATCTCGGGCAATCTCGAGAACAAGATTGAAAGTAAAAAGGACAATTTGAAGGATCTCGGGGCTATCTCATTATTATGCAGGTCGAGAATGGAGACACGAAAGGATTTAATTGGTGAACTCGGGGTGATCTCAGGTCGATTTTGGTCGGGATCATTAAAAATTTTAGTGATCGATATGTTGGATTTCAGGTGTAAAGACATGCAAAGACTTAAATTTTGA

Protein sequence

MEISGNLENKIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVIDMLDFRCKDMQRLKF*
Homology
[Close]
BLAST of CsaV3_6G013710 vs. NCBI nr
Match: KGN46818.1 (hypothetical protein Csa_020721 [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MEISGNLENKIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVID 60
          MEISGNLENKIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVID
Sbjct: 1  MEISGNLENKIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVID 60

Query: 61 MLDFRCKDMQRLKF 75
          MLDFRCKDMQRLKF
Sbjct: 61 MLDFRCKDMQRLKF 74

[Close]
BLAST of CsaV3_6G013710 vs. NCBI nr
Match: KAA0034004.1 (hypothetical protein E6C27_scaffold400G00700 [Cucumis melo var. makuwa] >TYK02803.1 hypothetical protein E5676_scaffold1418G00080 [Cucumis melo var. makuwa])

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-04
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 10 KIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVIDMLDFRCKDM 69
          +I+ K+ N KDL A   L RSR+ET K LIGEL VISG+F  GSLK+     L+FR   +
Sbjct: 38 EIKGKRGNWKDLRAFLGLYRSRLETGKGLIGELRVISGQFRLGSLKVKCSMELEFRAPKV 97

Query: 70 QR 72
           R
Sbjct: 98 SR 99

[Close]
BLAST of CsaV3_6G013710 vs. ExPASy TrEMBL
Match: A0A0A0KBB5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G139180 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 7.6e-33
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0 

Query: 1  MEISGNLENKIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVID 60
          MEISGNLENKIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVID
Sbjct: 1  MEISGNLENKIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVID 60

Query: 61 MLDFRCKDMQRLKF 75
          MLDFRCKDMQRLKF
Sbjct: 61 MLDFRCKDMQRLKF 74

[Close]
BLAST of CsaV3_6G013710 vs. ExPASy TrEMBL
Match: A0A5A7SS23 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1418G00080 PE=4 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 8.8e-05
Identity = 32/62 (51.61%), Postives = 40/62 (64.52%), Query Frame = 0 

Query: 10 KIESKKDNLKDLGAISLLCRSRMETRKDLIGELGVISGRFWSGSLKILVIDMLDFRCKDM 69
          +I+ K+ N KDL A   L RSR+ET K LIGEL VISG+F  GSLK+     L+FR   +
Sbjct: 38 EIKGKRGNWKDLRAFLGLYRSRLETGKGLIGELRVISGQFRLGSLKVKCSMELEFRAPKV 97

Query: 70 QR 72
           R
Sbjct: 98 SR 99

The following BLAST results are available for this feature:
BLAST of CsaV3_6G013710 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46818.11.6e-32100.00hypothetical protein Csa_020721 [Cucumis sativus][more]
KAA0034004.11.8e-0451.61hypothetical protein E6C27_scaffold400G00700 [Cucumis melo var. makuwa] >TYK0280... [more]
BLAST of CsaV3_6G013710 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G013710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBB57.6e-33100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G139180 PE=4 SV=1[more]
A0A5A7SS238.8e-0551.61Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
BLAST of CsaV3_6G013710 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G013710.1CsaV3_6G013710.1mRNA