CsaV3_6G012730 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G012730
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionCCHC-type domain-containing protein
Locationchr6: 8849406 .. 8850547 (-)
RNA-Seq ExpressionCsaV3_6G012730
SyntenyCsaV3_6G012730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTTATTCTACATAAAGAAGTTTATACATGGATCAAACTGAGAAATAATTGGTTTTTCTTTATAACATTGTTGTTTATAGGAACCAATATTTCACTAAGATGACCATAGGAGACTTGACCTTGATCCTAAGTAAGTTGTAAACTTCTACTTATGATGACGGTCCTTTGATTTGTATGGATGAGGTTGACTAATGATAGTCGACTCAACAAGTCTAACATTTTTGGGCTTTTACTAAGTAAGGAGCTTAAAACACAACGATGACAAGATGGAAGGTCATGCCTCGCCCCGTAACACCTCCTGACCCTCGAGTTGCAGGGTGGGATGCGACAGCTACATTTCTTGGGAATGGAACAAGTGCAAGTTTATAAGTTGCTCTTTTGGAAAACTTGAGCTAAAGATTTAACTTGTCTTTGTTAGATGTTTCGAAAAGACAACATGACAAGAAGAGGATGAGGACGATGTGGGAGTAGATCGCATACAACAGTTAAGCTCGATATGGCTCGATAAGAAGCTCAAGTAGTTAACCTAGATGCTAGAAGAGAAAGAGAAAAGAAATTATATATATGATAGAGTTGCCCAAAGGGTTGATTGAAAGATTGTCAAGAGAACCAGAGAAAAAGTTTGGAATAGAGCGGCTAAAAGCTTTAGCAGCCCAAGAATTCACAGAAAAGATTGAGCTAGAACAAGCGGAGAAATGGATAAGAACATTGGAAAAGAGTTTTAGAGTTGTGCAATGTGCAGAAGAGAGTAAAGTGGAATTCACAGTGCTCTTACAATGCAAGAAGGAGCAGAAGATAGGTGAGGAAGAGTGAGCAGAAAAAAGTTCAAGGAGATTTTCAATGGGAAGTATTTTTATAGGACTTACAAAGAAGAAAGGTGAGATGAATTTCTCCATTTGGGGCAAGGTGAGCTCTCGACCCCATAATATAAGAGGAAGTTCACCAAATTTGTGAAGTATGCATTGGTGATGGTGGCGATAGAAAGAAAAAGATGTAGATGTTTTGAGACTAGTTTAAGACCACAAATAAGAACTCTGGTTACAGCTTTAGCTATGCGGTGTGATTATGCAAAGTTGGTGGATGTAGCTCTACGAGCTGAGAGGAGTTTGGGAGGAAAAAGATCAAGTACTATGGTGAGTTGA

mRNA sequence

ATGATAGAGTTGCCCAAAGGGTTGATTGAAAGATTGTCAAGAGAACCAGAGAAAAAGTTTGGAATAGAGCGGCTAAAAGCTTTAGCAGCCCAAGAATTCACAGAAAAGATTGAGCTAGAACAAGCGGAGAAATGGATAAGAACATTGGAAAAGAGTTTTAGAGTTGTGCAATGTGCAGAAGAGAGTAAAGTGGAATTCACAGTGCTCTTACAATGCAAGAAGGAGCAGAAGATAGCTTTAGCTATGCGGTGTGATTATGCAAAGTTGGTGGATGTAGCTCTACGAGCTGAGAGGAGTTTGGGAGGAAAAAGATCAAGTACTATGGTGAGTTGA

Coding sequence (CDS)

ATGATAGAGTTGCCCAAAGGGTTGATTGAAAGATTGTCAAGAGAACCAGAGAAAAAGTTTGGAATAGAGCGGCTAAAAGCTTTAGCAGCCCAAGAATTCACAGAAAAGATTGAGCTAGAACAAGCGGAGAAATGGATAAGAACATTGGAAAAGAGTTTTAGAGTTGTGCAATGTGCAGAAGAGAGTAAAGTGGAATTCACAGTGCTCTTACAATGCAAGAAGGAGCAGAAGATAGCTTTAGCTATGCGGTGTGATTATGCAAAGTTGGTGGATGTAGCTCTACGAGCTGAGAGGAGTTTGGGAGGAAAAAGATCAAGTACTATGGTGAGTTGA

Protein sequence

MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS*
Homology
BLAST of CsaV3_6G012730 vs. NCBI nr
Match: KGN46719.1 (hypothetical protein Csa_020815 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 5.5e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE 60
           MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE
Sbjct: 1   MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE 60

Query: 61  ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS 111
           ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS
Sbjct: 61  ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS 110

BLAST of CsaV3_6G012730 vs. NCBI nr
Match: KGN61535.1 (hypothetical protein Csa_006696 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.8e-07
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 8   LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67
           LI  L+++ +K FGIER+KAL A EF      E+AEKWIRTLEK FRV+QC +E +V   
Sbjct: 32  LINALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLA 91

Query: 68  VLLQCKKEQ 77
           V L  ++ +
Sbjct: 92  VFLLLERAE 100

BLAST of CsaV3_6G012730 vs. NCBI nr
Match: KGN64939.1 (hypothetical protein Csa_022824 [Cucumis sativus])

HSP 1 Score: 64.3 bits (155), Expect = 7.5e-07
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 17  EKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQ 76
           +KK+GIE++KA   +EF+  +ELEQA KW+R LEK FRV+QC EE K++    L  +K +
Sbjct: 54  KKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 113

BLAST of CsaV3_6G012730 vs. NCBI nr
Match: KAA0066608.1 (A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase anchor protein 12 [Cucumis melo var. makuwa])

HSP 1 Score: 61.6 bits (148), Expect = 4.9e-06
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 8   LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67
           +I+ ++++ EKKFGIERL+AL   EFT   E  +A+K I+TLEK FRV QC++E KV+  
Sbjct: 45  VIDVMTQQLEKKFGIERLEALGTTEFTGTTEPREADKRIKTLEKCFRVTQCSQERKVDLA 104

Query: 68  V-LLQCKKE 76
           + LLQ  KE
Sbjct: 105 MFLLQEYKE 113

BLAST of CsaV3_6G012730 vs. NCBI nr
Match: XP_038896416.1 (uncharacterized protein LOC120084680 [Benincasa hispida])

HSP 1 Score: 60.5 bits (145), Expect = 1.1e-05
Identity = 37/89 (41.57%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 12  LSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQ 71
           +  +PEKKFGIERLKAL A  F    +   AE W+  +EK F+V++C E+ KVE    L 
Sbjct: 20  IQNDPEKKFGIERLKALGATTFDGTTDPLDAEIWLGLIEKCFKVMRCPEDCKVELATFLL 79

Query: 72  CKKEQKIALAMRCDYAKLVDVALRAERSL 101
            K  +K        + KLV+ A+R E S+
Sbjct: 80  QKGVEK--------WWKLVETAIRVEGSV 100

BLAST of CsaV3_6G012730 vs. ExPASy TrEMBL
Match: A0A0A0KCZ4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127310 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 2.7e-50
Identity = 110/110 (100.00%), Postives = 110/110 (100.00%), Query Frame = 0

Query: 1   MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE 60
           MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE
Sbjct: 1   MIELPKGLIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAE 60

Query: 61  ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS 111
           ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS
Sbjct: 61  ESKVEFTVLLQCKKEQKIALAMRCDYAKLVDVALRAERSLGGKRSSTMVS 110

BLAST of CsaV3_6G012730 vs. ExPASy TrEMBL
Match: A0A0A0LI31 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-07
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 0

Query: 8   LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67
           LI  L+++ +K FGIER+KAL A EF      E+AEKWIRTLEK FRV+QC +E +V   
Sbjct: 32  LINALAQQLKKNFGIERVKALGATEFNGIENHEEAEKWIRTLEKCFRVMQCPKERRVNLA 91

Query: 68  VLLQCKKEQ 77
           V L  ++ +
Sbjct: 92  VFLLLERAE 100

BLAST of CsaV3_6G012730 vs. ExPASy TrEMBL
Match: A0A0A0LVF8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 3.6e-07
Identity = 30/60 (50.00%), Postives = 43/60 (71.67%), Query Frame = 0

Query: 17  EKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFTVLLQCKKEQ 76
           +KK+GIE++KA   +EF+  +ELEQA KW+R LEK FRV+QC EE K++    L  +K +
Sbjct: 54  KKKYGIEQVKAFGDKEFSRTVELEQANKWLRALEKCFRVLQCLEERKIDLAAFLLHRKAE 113

BLAST of CsaV3_6G012730 vs. ExPASy TrEMBL
Match: A0A5D3CSN0 (A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00330 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 2.4e-06
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 0

Query: 8   LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFRVVQCAEESKVEFT 67
           +I+ ++++ EKKFGIERL+AL   EFT   E  +A+K I+TLEK FRV QC++E KV+  
Sbjct: 45  VIDVMTQQLEKKFGIERLEALGTTEFTGTTEPREADKRIKTLEKCFRVTQCSQERKVDLA 104

Query: 68  V-LLQCKKE 76
           + LLQ  KE
Sbjct: 105 MFLLQEYKE 113

BLAST of CsaV3_6G012730 vs. ExPASy TrEMBL
Match: A0A0A0L7X2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.9e-06
Identity = 30/47 (63.83%), Postives = 37/47 (78.72%), Query Frame = 0

Query: 8  LIERLSREPEKKFGIERLKALAAQEFTEKIELEQAEKWIRTLEKSFR 55
          L++ ++ +PEKKFGIERLKAL A EFT   + E+ EKWIRTLEK FR
Sbjct: 28 LVDIMAHQPEKKFGIERLKALGATEFTGTTKPEEFEKWIRTLEKCFR 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN46719.15.5e-50100.00hypothetical protein Csa_020815 [Cucumis sativus][more]
KGN61535.15.8e-0750.72hypothetical protein Csa_006696 [Cucumis sativus][more]
KGN64939.17.5e-0750.00hypothetical protein Csa_022824 [Cucumis sativus][more]
KAA0066608.14.9e-0652.17A-kinase anchor protein 12 [Cucumis melo var. makuwa] >TYK14208.1 A-kinase ancho... [more]
XP_038896416.11.1e-0541.57uncharacterized protein LOC120084680 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KCZ42.7e-50100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G127310 PE=4 SV=1[more]
A0A0A0LI312.8e-0750.72Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G163160 PE=4 SV=1[more]
A0A0A0LVF83.6e-0750.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G165220 PE=4 SV=1[more]
A0A5D3CSN02.4e-0652.17A-kinase anchor protein 12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A0A0L7X26.9e-0663.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G426910 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 22..42

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G012730.1CsaV3_6G012730.1mRNA