CsaV3_6G011240 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G011240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 8368342 .. 8368648 (+)
RNA-Seq Expression	CsaV3_6G011240
Synteny	CsaV3_6G011240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTAATCTCGCTCTCACTCACTTTCTTTCTCTCATAAAGATCGCTCTCCTTGGTCTCCTTATTTCACTTGCTGTCTTGTTTTACTCTTCACTTTCTCTTTGTCAGGCTCTCCTCTCTCGCTATCCCATCTTGTTCTGCAACATTGTCGAATCTGGGCATAATTTCACTTGCTGGTGGAGGAGGAGCCAAAGAAGAAGTACAAGAGAAGAATAAAAAGGAAAAAAGAAAAAAAGTTGCAAAAGAAGAACGAGAGCGAAGTACAAAAGATAGGAAATATAAGCATAAAACACAGAAAAAAAAATAA

mRNA sequence

ATGGCTAATCTCGCTCTCACTCACTTTCTTTCTCTCATAAAGATCGCTCTCCTTGGTCTCCTTATTTCACTTGCTGTCTTGCTCTCCTCTCTCGCTATCCCATCTTGTTCTGCAACATTGTCGAATCTGGGCATAATTTCACTTGCTGGTGGAGGAGGAGCCAAAGAAGAAGTACAAGAGAAGAATAAAAAGGAAAAAAGAAAAAAAGTTGCAAAAGAAGAACGAGAGCGAAGTACAAAAGATAGGAAATATAAGCATAAAACACAGAAAAAAAAATAA

Coding sequence (CDS)

ATGGCTAATCTCGCTCTCACTCACTTTCTTTCTCTCATAAAGATCGCTCTCCTTGGTCTCCTTATTTCACTTGCTGTCTTGCTCTCCTCTCTCGCTATCCCATCTTGTTCTGCAACATTGTCGAATCTGGGCATAATTTCACTTGCTGGTGGAGGAGGAGCCAAAGAAGAAGTACAAGAGAAGAATAAAAAGGAAAAAAGAAAAAAAGTTGCAAAAGAAGAACGAGAGCGAAGTACAAAAGATAGGAAATATAAGCATAAAACACAGAAAAAAAAATAA

Protein sequence

MANLALTHFLSLIKIALLGLLISLAVLLSSLAIPSCSATLSNLGIISLAGGGGAKEEVQEKNKKEKRKKVAKEERERSTKDRKYKHKTQKKK*

Homology

[Close]

BLAST of CsaV3_6G011240 vs. NCBI nr
Match: KGN46671.1 (hypothetical protein Csa_018257 [Cucumis sativus])

HSP 1 Score: 147.1 bits (370), Expect = 7.4e-32
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MANLALTHFLSLIKIALLGLLISLAVLLSSLAIPSCSATLSNLGIISLAGGGGAKEEVQE 60
          MANLALTHFLSLIKIALLGLLISLAVLLSSLAIPSCSATLSNLGIISLAGGGGAKEEVQE
Sbjct: 1  MANLALTHFLSLIKIALLGLLISLAVLLSSLAIPSCSATLSNLGIISLAGGGGAKEEVQE 60

Query: 61 KNKKEKRKKVAKEERERSTKDRKYKHKTQKKK 93
          KNKKEKRKKVAKEERERSTKDRKYKHKTQKKK
Sbjct: 61 KNKKEKRKKVAKEERERSTKDRKYKHKTQKKK 92

[Close]

BLAST of CsaV3_6G011240 vs. ExPASy TrEMBL
Match: A0A0A0KFZ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G120410 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 3.6e-32
Identity = 92/92 (100.00%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MANLALTHFLSLIKIALLGLLISLAVLLSSLAIPSCSATLSNLGIISLAGGGGAKEEVQE 60
          MANLALTHFLSLIKIALLGLLISLAVLLSSLAIPSCSATLSNLGIISLAGGGGAKEEVQE
Sbjct: 1  MANLALTHFLSLIKIALLGLLISLAVLLSSLAIPSCSATLSNLGIISLAGGGGAKEEVQE 60

Query: 61 KNKKEKRKKVAKEERERSTKDRKYKHKTQKKK 93
          KNKKEKRKKVAKEERERSTKDRKYKHKTQKKK
Sbjct: 61 KNKKEKRKKVAKEERERSTKDRKYKHKTQKKK 92

The following BLAST results are available for this feature:

BLAST of CsaV3_6G011240 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46671.1	7.4e-32	100.00	hypothetical protein Csa_018257 [Cucumis sativus]	[more]

BLAST of CsaV3_6G011240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G011240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KFZ9	3.6e-32	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G120410 PE=4 SV=1	[more]

BLAST of CsaV3_6G011240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 54..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..81
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 56..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G011240.1	CsaV3_6G011240.1	mRNA