CsaV3_6G009570 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G009570
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	F-box protein SNE
Location	chr6: 7709737 .. 7713359 (-)
RNA-Seq Expression	CsaV3_6G009570
Synteny	CsaV3_6G009570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCATGAACAGCTGATTTCAATTTCAAAGGATCTCCCTCCTCCTTTGAAGAGTGGTTCCGAAATCACAACGGACACATGCCTAAAATCTTGGAATATGCACAAACTAAATTCAACTACAGTTTCAGCTTCTGCTAAACCCAAAACCAAATTTGTTTATTGAAAAAAGAAACCAAAGAAAGAGAAAGTTAAACAGCATCCCATTCATTTGCATTGGTTTTGAGGTTTTTCTTTTATTTGGATCTTCTTCTTTGGCCCCATCTCCTCCCCCCTCGATACCCTCTCAATCCTTCTCACAGGCATTTTCACAAACACGCGGACTTCGAGACGCACAGCAAGACAAATCCTATCTTAGACTTTTTCTCCTTGTTAATGAATTTCCATCGGATTGAGCTCTCTCTCTCTCTCTTTCCATCTCTCAATCTAATGTCAATTCCATATATATCAAAGACGCGTAGAGTTTCAAGTTTCACCTACCAGATTCCTAATTACTCTAGGGCTTAAACATAAACAATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCTCGGGGTCGCGACCTGTGTCTGCCGGCTATGGTGCACCATAGCTCGAAGTGAATCGGTGTGGGAACAAGTGTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCGGTGAAAACGGTGGTAGCCGCCTTGGGAGGGTACAAGAGGCTATACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTCCAACTTTCACTTTCTCTGTTTTGTGTGGACTATTACGAGAGGCTCACTGGGAGTGGAAGAATAGGCGGCGAGGCATCCGCATTGTCCCTCATGTTCCTGTGCAACACAGTGAACGTCTGATTCATCTTATTGCCTCTTTGTCATACTTTCTCGCCCCTCCGATCTGCAGACCAAATCTGTATAAGAGAACCAAGCTCCATCCGGTGATTTTAGTCAAAAGGATTAAGATTAGCCTTGGCCTGGTACGAATATGAGTATGAACATCAAATATCAAATATCAAATATCAAATATCAAATATCAAATATGATGATTTTTCAATATTATACACCCATTTTCTTAAATAAAAAAACATTGAACTATTTTTTTTTTTTTCTACATCTTGATTATTGCTGTTTGCTTCATCTTGTCTATTTTATTTTTTTATTCGTTATTTCTTGTAACAACCAATTTATATATGAAATATTCGGGTCTTCTTGACTTCACTTTATCATAGTGCCTTTTTTCTTTTCTTTTGTTATTTTCTGAATACTCTTGTTAAAAATAAAAATAAAAAAAGACAGTAACAAAATTAATTTAATTCTAAAAGAAACGAAAGGCAAAATGAGATGAAAACACATGATTTTCGATCAAGTCCACCAGAAGGCAGTAGAGAAAATAGTTTTTATTTTATTTTTTTTTTTTTTTTGAGAGGCAAAGAAAAAGTAATAAGGGATTATGAGAAGAGAAATGGGGATTGGCACAAGTGGGTGGTCCTATATAAACATTGGATGATTGGCTCATCACAAGAATAAGGCCTAATTCATCACATATTGAATCCCATGTGGGGTAGGGGACATATTTTAGAGTGACCTTGGGGCAACCAAGGCTTATAGTGGGTTCCATTCTTTTGATTTTGATATCAATCAACCATCGAACCCAATCTATCCAATTTTTAGACTATAAACTAAACCCATGTCTAATGAAAGACAAAACCAATAGTTTGGTTTTCTTTTTTTCCTTTTTTTCTTTTTTTCTCTTTTTTATATTTTTAATTTGCATTTTCTCATTTTTAAATTTGGTCATTCTTTTCGGTAATTTTTTTCTTTTAGATGATAATTAAGTCGTTTTTTATTCTCACTAACAAATATATATGTACCATAATTATTAAAATATTAAAAGTAAAAATATTAATTGAATCCTGTTTGCACAAGGTTCTTGGAGAAACTTGTTTCATAGACTTGAACTTGTGTTTGTGTTGATTTGATGTCATGTCGTTCAATCTCTAGTACTCGATCCTTTAATTCTCTATCGATTGAATGTCTATGTTTGATGTTCTTGAAGTCGAAGTTTTGAAAGAATATTGGTACCTTCAAAGAGCTTGAGCTTTATGAATGGTTCAGCCTTTAGGAGTTATAGAGTTTTGATTGTTTAAGAGAATTCTCTAAGACATTTCCAAAAGAATTATTTTTTTATCTTTCTACAACATGAAGAGGTGATTGGTTTATGGATCAAACCAATGGGTTCAACCACATGGTTTTGATTCAGATTTAGCATCGGGACTAAATTAGCTCCTTGTTTTTCTTTTTGCTTAGTTGGACTTTAGCCCAAATAAATGATATTTATTTTGACTAAAATAATTAACTTGATCCACCGGTTATAATGAAAACATGGGGTGTGATCAGAATAGTCAAATTTATGTCTTCAATTTCAATTTGGGACACATGTCAACTTTTAATTAGTCCTAGATTCAATTATTTATTTTTTTGGCATTAATTTGGCAAATGAGGCAATTTGTGATTGGTCCAAAATTTCTTATTCAACAAATACCTCTTTCAAGATTAATGCATGTATATGGGTGGATGAATCTCGAAAAAGATAAAGTTGAAGTCAAAATACAAGCAATTGTTTTTCTTATTTTTAATTTTTGGCTCAATTTGACATACAAAAAATAATCAAAACTATGAATTTAGTACATGAATTTGATTTGAATTTGGAATAAGGGTTGGAATATGGCTAAACCATAATTTGAGACAAGATTGAGCGAACTAAATTGCGTAAGGAAGCCGGTGAAGGAAGGTATCATGTTATCAGACGAATAAGCTATATGACTACCTCGATGCGATATAACTCACGACTGTGTCGAGTTATTCAGAGAAACGCACGCCAGTAGTAGTGGCGAGTTAATTTCAAAAGTAGCAGAGGACGCTTTTGTAAATTTTAGAAAACTTTATGTTTTGTTATACTTTCAATTATGTTTTCAAGTTTGATCATCTCTAACTTACAAGCTTCTATTGTGCAGAATCAAGTGGTGGAACTTCAATCTTAGTCTGTACCAAAGGGTTCTCAACCACTAATTGAGGACGAGATATGCGAGACAGTTTTGGGTAGACGACCGAACTACTCAAAAGGTCTTGGTTGGGACCCAAAATTCAAGCCTAGGATGAATGTCGTTTTATCTTCTTCCACCAATATGTTGACTACCAGGCACACATAGCGGAGGTTGGTGAACTAAAGGCGAGCCTTGAAAATGCTAACCAAAAGATCGAAGAACAACGTCTGAGGAAGAATGAGCGAGATCGACAAATGACGAACCATGCACGACAAATGGAGGAGATGAAGAAGATGCTCGAGGAGATGAGTCGGGCATAGAGAGGCTAGTGATCACTTGGAGTATGCACTTTTCAATTTTTAATGTGTTTAACTTTGCATATGTGATACTCTAACTATACTTTTATGTCATTTGTAGGTTTCGCTTCCATAACTATGGCGCACTAGAGCATTTTTGAGTTTTTTT

mRNA sequence

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCTCGGGGTCGCGACCTGTGTCTGCCGGCTATGGTGCACCATAGCTCGAAGTGAATCGGTGTGGGAACAAGTGTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCGGTGAAAACGGTGGTAGCCGCCTTGGGAGGGTACAAGAGGCTATACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTCCAACTTTCACTTTCTCTGTTTTGTGTGGACTATTACGAGAGGCTCACTGGGAGTGGAAGAATAGGCGGCGAGGCATCCGCATTGTCCCTCATGTTCCTGTGCAACACAGTGAACGTCTGA

Coding sequence (CDS)

ATGCAGAAGAATCACATACCAGAGCCGAACGAGAAGAGGCGGAAGTTCTTAATCAACGACAATCTCGACATTCTGATCGAAATCCTCAAGCGGCTAGACGGACCATCCCTCGGGGTCGCGACCTGTGTCTGCCGGCTATGGTGCACCATAGCTCGAAGTGAATCGGTGTGGGAACAAGTGTGCTTCCGTCATGTAAAATCGCCGCTTCCGTCGTCGGTGAAAACGGTGGTAGCCGCCTTGGGAGGGTACAAGAGGCTATACATGGTTAGCATTCGACCGGTGCTGAGTCGACTCGGGTACTCGGACCTGGTGAGGCGAGTTTGGACTCAGGATGAGGTCCAACTTTCACTTTCTCTGTTTTGTGTGGACTATTACGAGAGGCTCACTGGGAGTGGAAGAATAGGCGGCGAGGCATCCGCATTGTCCCTCATGTTCCTGTGCAACACAGTGAACGTCTGA

Protein sequence

MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV*

Homology

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BLAST of CsaV3_6G009570 vs. NCBI nr
Match: XP_004140002.1 (F-box protein SNE [Cucumis sativus] >XP_031743985.1 F-box protein SNE [Cucumis sativus] >KGN46603.1 hypothetical protein Csa_005230 [Cucumis sativus])

HSP 1 Score: 311.6 bits (797), Expect = 3.7e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGGEASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 152

[Close]

BLAST of CsaV3_6G009570 vs. NCBI nr
Match: XP_038902594.1 (F-box protein SNE [Benincasa hispida])

HSP 1 Score: 306.6 bits (784), Expect = 1.2e-79
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLPSSVK+VVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVTSPLPSSVKSVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of CsaV3_6G009570 vs. NCBI nr
Match: KAA0060791.1 (F-box protein SNE [Cucumis melo var. makuwa] >TYK11951.1 F-box protein SNE [Cucumis melo var. makuwa])

HSP 1 Score: 306.2 bits (783), Expect = 1.6e-79
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

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BLAST of CsaV3_6G009570 vs. NCBI nr
Match: XP_016903159.1 (PREDICTED: F-box protein SNE [Cucumis melo])

HSP 1 Score: 304.3 bits (778), Expect = 6.0e-79
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

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BLAST of CsaV3_6G009570 vs. NCBI nr
Match: XP_022985800.1 (F-box protein SNE-like [Cucurbita maxima])

HSP 1 Score: 294.3 bits (752), Expect = 6.2e-76
Identity = 143/153 (93.46%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGYSDL+RRVWTQ+EVQLSLSLF
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRI-GGEASALSLMFLCNTVNV 153
           CVDYYERLTG+GR+ GG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGGDASALSLMFLCNTVNV 153

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BLAST of CsaV3_6G009570 vs. ExPASy Swiss-Prot
Match: Q9LUB6 (F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1)

HSP 1 Score: 147.9 bits (372), Expect = 9.4e-35
Identity = 81/154 (52.60%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 6   IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQ 65
           + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE+
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 66  VCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLS 125
           +CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R     L + +WT+D++QLSLS
Sbjct: 70  LCFRQV-SPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWTRDQLQLSLS 129

Query: 126 LFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           L+CV YYERL   G   G+A   SL+FL   VNV
Sbjct: 130 LYCVHYYERLY-VGAWLGDAPPSSLIFLRKPVNV 156

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BLAST of CsaV3_6G009570 vs. ExPASy Swiss-Prot
Match: Q9STX3 (F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.5e-11
Identity = 40/117 (34.19%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 21  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTV 80
           NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH  +     + +++V
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSV 93

Query: 81  VAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR 134
           V ALGG++RL+ + + P LS+       R  + +DE++L+LSL  + YYE+++ + R
Sbjct: 94  VLALGGFRRLHSLYLWP-LSKPN----PRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

[Close]

BLAST of CsaV3_6G009570 vs. ExPASy Swiss-Prot
Match: Q7XAK4 (F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.6e-10
Identity = 39/115 (33.91%), Postives = 63/115 (54.78%), Query Frame = 0


Query: 23  DILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKSP--LPSSVKTVVAAL 82
           D++ E+L+R +  +L  A CV R W  +A  E +WE  C R   +       ++ VV +L
Sbjct: 79  DLVFEVLRRAEARTLAAAACVSRGWRQLAEDERLWEAACVREWANLGFSERQLRAVVLSL 138

Query: 83  GGYKRLYMVSIRP-------VLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERL 129
           GG++RL+ V IRP       V  + G      R+  +D+VQLSLSLF + +++ +
Sbjct: 139 GGFRRLHAVYIRPLQWRGAGVPRQQGRRQPPVRL-GRDQVQLSLSLFSIGFFQNM 192

[Close]

BLAST of CsaV3_6G009570 vs. ExPASy TrEMBL
Match: A0A0A0KAT5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 SV=1)

HSP 1 Score: 311.6 bits (797), Expect = 1.8e-81
Identity = 152/152 (100.00%), Postives = 152/152 (100.00%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGGEASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 152

[Close]

BLAST of CsaV3_6G009570 vs. ExPASy TrEMBL
Match: A0A5A7V4V6 (F-box protein SNE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G001340 PE=4 SV=1)

HSP 1 Score: 306.2 bits (783), Expect = 7.6e-80
Identity = 149/152 (98.03%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of CsaV3_6G009570 vs. ExPASy TrEMBL
Match: A0A1S4E4K7 (F-box protein SNE OS=Cucumis melo OX=3656 GN=LOC103502114 PE=4 SV=1)

HSP 1 Score: 304.3 bits (778), Expect = 2.9e-79
Identity = 148/152 (97.37%), Postives = 151/152 (99.34%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPE NEK+RKFLIND+LDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEQNEKKRKFLINDDLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF
Sbjct: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           CVDYYERLTGSGRIGG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGSGRIGGDASALSLMFLCNTVNV 152

[Close]

BLAST of CsaV3_6G009570 vs. ExPASy TrEMBL
Match: A0A6J1JCA9 (F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111483741 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.0e-76
Identity = 143/153 (93.46%), Postives = 150/153 (98.04%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGYSDL+RRVWTQ+EVQLSLSLF
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRI-GGEASALSLMFLCNTVNV 153
           CVDYYERLTG+GR+ GG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGGDASALSLMFLCNTVNV 153

[Close]

BLAST of CsaV3_6G009570 vs. ExPASy TrEMBL
Match: A0A6J1FVJ9 (F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111448489 PE=4 SV=1)

HSP 1 Score: 293.5 bits (750), Expect = 5.1e-76
Identity = 142/154 (92.21%), Postives = 150/154 (97.40%), Query Frame = 0


Query: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQV 60
           MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLG+ATCVCRLWCTIARSESVWEQV
Sbjct: 1   MQKNHIPEPNEKRRKFLINDNLDILIEILKRLDGPSLGIATCVCRLWCTIARSESVWEQV 60

Query: 61  CFRHVKSPLPSSVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLF 120
           CFRHV SPLP+SVK+VV ALGGYKRLYMVSIRPVLSRLGYSDL+RRVWTQ+EVQLSLSLF
Sbjct: 61  CFRHVTSPLPASVKSVVVALGGYKRLYMVSIRPVLSRLGYSDLMRRVWTQNEVQLSLSLF 120

Query: 121 CVDYYERLTGSGRI--GGEASALSLMFLCNTVNV 153
           CVDYYERLTG+GR+  GG+ASALSLMFLCNTVNV
Sbjct: 121 CVDYYERLTGNGRLGGGGDASALSLMFLCNTVNV 154

[Close]

BLAST of CsaV3_6G009570 vs. TAIR 10
Match: AT5G48170.1 (F-box family protein )

HSP 1 Score: 147.9 bits (372), Expect = 6.6e-36
Identity = 81/154 (52.60%), Postives = 110/154 (71.43%), Query Frame = 0


Query: 6   IPEPNEKRRK------FLINDNLDILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQ 65
           + + N KR++      F IND+ D+L+EIL+RLDG SL  A CVCRLW  +AR++S+WE+
Sbjct: 10  VEKSNNKRQRVNQVPVFSINDHHDVLVEILRRLDGSSLCSAACVCRLWSAVARNDSIWEE 69

Query: 66  VCFRHVKSPLPS-SVKTVVAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLS 125
           +CFR V SP PS S+++VV+ALGGY+ LY + IRPVL+R     L + +WT+D++QLSLS
Sbjct: 70  LCFRQV-SPRPSLSLRSVVSALGGYRCLYFLCIRPVLAR-----LPKLLWTRDQLQLSLS 129

Query: 126 LFCVDYYERLTGSGRIGGEASALSLMFLCNTVNV 153
           L+CV YYERL   G   G+A   SL+FL   VNV
Sbjct: 130 LYCVHYYERLY-VGAWLGDAPPSSLIFLRKPVNV 156

[Close]

BLAST of CsaV3_6G009570 vs. TAIR 10
Match: AT4G24210.1 (F-box family protein )

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12
Identity = 40/117 (34.19%), Postives = 74/117 (63.25%), Query Frame = 0


Query: 21  NLD--ILIEILKRLDGPSLGVATCVCRLWCTIARSESVWEQVCFRHVKS--PLPSSVKTV 80
           NLD  ++ E+LK +D  +L +++CV ++W   A+ E +WE +C RH  +     + +++V
Sbjct: 34  NLDENLVYEVLKHVDAKTLAMSSCVSKIWHKTAQDERLWELICTRHWTNIGCGQNQLRSV 93

Query: 81  VAALGGYKRLYMVSIRPVLSRLGYSDLVRRVWTQDEVQLSLSLFCVDYYERLTGSGR 134
           V ALGG++RL+ + + P LS+       R  + +DE++L+LSL  + YYE+++ + R
Sbjct: 94  VLALGGFRRLHSLYLWP-LSKPN----PRARFGKDELKLTLSLLSIRYYEKMSFTKR 145

The following BLAST results are available for this feature:

BLAST of CsaV3_6G009570 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140002.1	3.7e-81	100.00	F-box protein SNE [Cucumis sativus] >XP_031743985.1 F-box protein SNE [Cucumis s...	[more]
XP_038902594.1	1.2e-79	98.03	F-box protein SNE [Benincasa hispida]	[more]
KAA0060791.1	1.6e-79	98.03	F-box protein SNE [Cucumis melo var. makuwa] >TYK11951.1 F-box protein SNE [Cucu...	[more]
XP_016903159.1	6.0e-79	97.37	PREDICTED: F-box protein SNE [Cucumis melo]	[more]
XP_022985800.1	6.2e-76	93.46	F-box protein SNE-like [Cucurbita maxima]	[more]

BLAST of CsaV3_6G009570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LUB6	9.4e-35	52.60	F-box protein SNE OS=Arabidopsis thaliana OX=3702 GN=SNE PE=1 SV=1	[more]
Q9STX3	1.5e-11	34.19	F-box protein GID2 OS=Arabidopsis thaliana OX=3702 GN=GID2 PE=1 SV=1	[more]
Q7XAK4	3.6e-10	33.91	F-box protein GID2 OS=Oryza sativa subsp. japonica OX=39947 GN=GID2 PE=1 SV=1	[more]

BLAST of CsaV3_6G009570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAT5	1.8e-81	100.00	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G111930 PE=4 ...	[more]
A0A5A7V4V6	7.6e-80	98.03	F-box protein SNE OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold177G00...	[more]
A0A1S4E4K7	2.9e-79	97.37	F-box protein SNE OS=Cucumis melo OX=3656 GN=LOC103502114 PE=4 SV=1	[more]
A0A6J1JCA9	3.0e-76	93.46	F-box protein SNE-like OS=Cucurbita maxima OX=3661 GN=LOC111483741 PE=4 SV=1	[more]
A0A6J1FVJ9	5.1e-76	92.21	F-box protein SNE-like OS=Cucurbita moschata OX=3662 GN=LOC111448489 PE=4 SV=1	[more]

BLAST of CsaV3_6G009570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48170.1	6.6e-36	52.60	F-box family protein	[more]
AT4G24210.1	1.0e-12	34.19	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	SMART	SM00256	fbox_2	coord: 22..60 e-value: 0.0073 score: 25.5
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 23..63 e-value: 1.1E-8 score: 34.8
None	No IPR available	GENE3D	1.20.1280.50		coord: 8..92 e-value: 1.7E-9 score: 39.4
IPR044184	F-box protein SNE	PANTHER	PTHR47750	F-BOX PROTEIN SNE	coord: 3..152
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 23..73

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G009570.1	CsaV3_6G009570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009937	regulation of gibberellic acid mediated signaling pathway
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding