CsaV3_6G008740 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G008740
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	major pollen allergen Ole e 6-like
Location	chr6: 7035886 .. 7036866 (+)
RNA-Seq Expression	CsaV3_6G008740
Synteny	CsaV3_6G008740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTATTTCTAAATTTAGCTCCATCATACAATACTATAAAAAGTGATATTATTCATCCACCGAAGAGAAAGCACTTGTAAAAAGGTACAATCCAGAAAAGAGAAAGGAAAATTAAAGAGGAAAATCATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGGTATTGATCTTTCTTCTTTAATTTTTCTATTTGACTCTCTTCTTTTAATAATCATAAGTTTAAGTTTTTCTTTTCATTTTATTAGTAATCGAACATGGTGTCAAATCAAGAAATTAAATCTAATTAATGTTAGAAAACCTTTTAATATCATTTCCTTTCTCAATATTAATTAATTTCCGCCTATTTGATCTTCCACATATTTTCAAGTACATTGTAAGGTGTTGGAACAATCAATTATTTAACATAATATCTTAATATTTATTTAGTTTATATATTCAAACCCTAAGGTTAGGTTTTTCACAAATAAACTATTGGCATAATATTAAATTTATTTTCACCAAATAAAGTTAAAAGAAAAGGTCAATGAGTATAAATTAAAAGATTGCATTATATTTTTAATAATGAAATTGAAATTTGTTGTATTTGTTTTTGCAGATAAGCTTCATATCAACCCAGCAAATTGAGGAAAAATGGAGGATGAAAAGAAAAGAAAATAAGAGAAGAGTCATTATTATTATGAGAGAATTTATGTCAAGAATTATTAACAATATTGTATTATTATATTAAAATAATCTATATAGAGAGGAGCTTAATAAAGGGTTTGAAGAGGAGTTAATCATA

mRNA sequence

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGATAAGCTTCATATCAACCCAGCAAATTGA

Coding sequence (CDS)

ATGGCCAAGAAGAAGATGATGGGAGTGTTATTGATATGCATTGTGGTAATGGCTGCTTTGGAGTTTTCCATTGTCAATGGAGAAGAGAAGGAGGACAAGTACGAGTCCAAATTTGATGCTAAATATAAAACTTGCTATGAAAGTTGTGAGAAAGAATGTCTAGAAAACGGTAATAATGGTCAAAGTTTTTGTGAAGTTAAATGTGACGAAGATTGCGGTGAAAAAGAAAGTGCGGATAAGCTTCATATCAACCCAGCAAATTGA

Protein sequence

MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSFCEVKCDEDCGEKESADKLHINPAN*

Homology

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: KGN46519.1 (hypothetical protein Csa_005196 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 2.2e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG 60
          MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG
Sbjct: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG 60

Query: 61 QSFCEVKCDEDCGEKESADKLHINPAN 88
          QSFCEVKCDEDCGEKESADKLHINPAN
Sbjct: 61 QSFCEVKCDEDCGEKESADKLHINPAN 87

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: XP_016902456.1 (PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 157.9 bits (398), Expect = 4.0e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 4   KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
           KKMMGVLLICIVVMAALEFSI NGEEK+DKYESKFDAKYK+CYESCEKECL+NGNNGQSF
Sbjct: 586 KKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQSF 645

Query: 64  CEVKCDEDCGEKESADKLHINPAN 88
           CEVKCDEDC EKE ADKL I+PAN
Sbjct: 646 CEVKCDEDCDEKEVADKLRIDPAN 669

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: KAA0039790.1 (carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa] >TYK24707.1 carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa])

HSP 1 Score: 157.9 bits (398), Expect = 4.0e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMMGVLLICIVVMAALEFSI NGEEK+DKYESKFDAKYK+CYESCEKECL+NGNNGQSF
Sbjct: 3  KKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQSF 62

Query: 64 CEVKCDEDCGEKESADKLHINPAN 88
          CEVKCDEDC EKE ADKL I+PAN
Sbjct: 63 CEVKCDEDCDEKEVADKLRIDPAN 86

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: KAA0039793.1 (carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa] >TYK24704.1 carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa])

HSP 1 Score: 141.0 bits (354), Expect = 5.0e-30
Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 4  KKMMGV-LLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQS 63
          KKMMGV LLICIVVMAALEFSI NGEEK+D+YESKFDA+Y++CYESCEKECL+N NNG+S
Sbjct: 3  KKMMGVSLLICIVVMAALEFSIANGEEKKDEYESKFDARYRSCYESCEKECLKNSNNGKS 62

Query: 64 FCEVKCDEDCGEKESADKLHI 84
          FCEVKCDEDC EKE ADKLH+
Sbjct: 63 FCEVKCDEDCDEKEVADKLHV 83

[Close]

BLAST of CsaV3_6G008740 vs. NCBI nr
Match: XP_038906682.1 (major pollen allergen Ole e 6-like [Benincasa hispida])

HSP 1 Score: 123.6 bits (309), Expect = 8.3e-25
Identity = 62/84 (73.81%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKM+ V L+CIVVMAAL+F+  N  E+  KYE+KFDAKYK+CYE+CEKECLE G NGQSF
Sbjct: 3  KKMIAVFLMCIVVMAALQFTTAN--EEVAKYEAKFDAKYKSCYETCEKECLEKG-NGQSF 62

Query: 64 CEVKCDEDCGEKESADKLHINPAN 88
          CEVKCDEDC EKE+ADKLHI PA+
Sbjct: 63 CEVKCDEDCDEKETADKLHIKPAH 83

[Close]

BLAST of CsaV3_6G008740 vs. ExPASy Swiss-Prot
Match: O24172 (Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.4e-06
Identity = 22/43 (51.16%), Postives = 32/43 (74.42%), Query Frame = 0


Query: 39 DAKYKTCYESCEKECLENGNNGQSFCEVKCDEDCGEKESADKL 82
          +A++K CY++C KEC + G NG +FCE+KCD DC  K+  +KL
Sbjct: 2  EAQFKECYDTCHKECSDKG-NGFTFCEMKCDTDCSVKDVKEKL 43

[Close]

BLAST of CsaV3_6G008740 vs. ExPASy TrEMBL
Match: A0A0A0KCI6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.1e-41
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0


Query: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG 60
          MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG
Sbjct: 1  MAKKKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNG 60

Query: 61 QSFCEVKCDEDCGEKESADKLHINPAN 88
          QSFCEVKCDEDCGEKESADKLHINPAN
Sbjct: 61 QSFCEVKCDEDCGEKESADKLHINPAN 87

[Close]

BLAST of CsaV3_6G008740 vs. ExPASy TrEMBL
Match: A0A5D3DM52 (Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002640 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMMGVLLICIVVMAALEFSI NGEEK+DKYESKFDAKYK+CYESCEKECL+NGNNGQSF
Sbjct: 3  KKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQSF 62

Query: 64 CEVKCDEDCGEKESADKLHINPAN 88
          CEVKCDEDC EKE ADKL I+PAN
Sbjct: 63 CEVKCDEDCDEKEVADKLRIDPAN 86

[Close]

BLAST of CsaV3_6G008740 vs. ExPASy TrEMBL
Match: A0A1S4E2K0 (carotenoid cleavage dioxygenase 7, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=CCD7 PE=3 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-35
Identity = 76/84 (90.48%), Postives = 80/84 (95.24%), Query Frame = 0


Query: 4   KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
           KKMMGVLLICIVVMAALEFSI NGEEK+DKYESKFDAKYK+CYESCEKECL+NGNNGQSF
Sbjct: 586 KKMMGVLLICIVVMAALEFSIANGEEKKDKYESKFDAKYKSCYESCEKECLQNGNNGQSF 645

Query: 64  CEVKCDEDCGEKESADKLHINPAN 88
           CEVKCDEDC EKE ADKL I+PAN
Sbjct: 646 CEVKCDEDCDEKEVADKLRIDPAN 669

[Close]

BLAST of CsaV3_6G008740 vs. ExPASy TrEMBL
Match: A0A0A0KFH6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 8.9e-33
Identity = 70/80 (87.50%), Postives = 75/80 (93.75%), Query Frame = 0


Query: 4  KKMMGVLLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQSF 63
          KKMMGVLLICIV+MA LEFSIVNGEEKEDKYESKFDA+YK+CYESCEKECL NG NGQS+
Sbjct: 3  KKMMGVLLICIVIMAVLEFSIVNGEEKEDKYESKFDARYKSCYESCEKECLTNGKNGQSY 62

Query: 64 CEVKCDEDCGEKESADKLHI 84
          CEVKCDEDC EKE ADKLH+
Sbjct: 63 CEVKCDEDCDEKEVADKLHV 82

[Close]

BLAST of CsaV3_6G008740 vs. ExPASy TrEMBL
Match: A0A5A7T9T6 (Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G002610 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.4e-30
Identity = 68/81 (83.95%), Postives = 76/81 (93.83%), Query Frame = 0


Query: 4  KKMMGV-LLICIVVMAALEFSIVNGEEKEDKYESKFDAKYKTCYESCEKECLENGNNGQS 63
          KKMMGV LLICIVVMAALEFSI NGEEK+D+YESKFDA+Y++CYESCEKECL+N NNG+S
Sbjct: 3  KKMMGVSLLICIVVMAALEFSIANGEEKKDEYESKFDARYRSCYESCEKECLKNSNNGKS 62

Query: 64 FCEVKCDEDCGEKESADKLHI 84
          FCEVKCDEDC EKE ADKLH+
Sbjct: 63 FCEVKCDEDCDEKEVADKLHV 83

The following BLAST results are available for this feature:

BLAST of CsaV3_6G008740 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46519.1	2.2e-41	100.00	hypothetical protein Csa_005196 [Cucumis sativus]	[more]
XP_016902456.1	4.0e-35	90.48	PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic isoform X1 [Cucumis ...	[more]
KAA0039790.1	4.0e-35	90.48	carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa] >TYK24707.1 caroten...	[more]
KAA0039793.1	5.0e-30	83.95	carotenoid cleavage dioxygenase 7 [Cucumis melo var. makuwa] >TYK24704.1 caroten...	[more]
XP_038906682.1	8.3e-25	73.81	major pollen allergen Ole e 6-like [Benincasa hispida]	[more]

BLAST of CsaV3_6G008740 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O24172	2.4e-06	51.16	Major pollen allergen Ole e 6 OS=Olea europaea OX=4146 GN=OLE6 PE=1 SV=1	[more]

BLAST of CsaV3_6G008740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCI6	1.1e-41	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G106710 PE=4 SV=1	[more]
A0A5D3DM52	1.9e-35	90.48	Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4E2K0	1.9e-35	90.48	carotenoid cleavage dioxygenase 7, chloroplastic isoform X1 OS=Cucumis melo OX=3...	[more]
A0A0A0KFH6	8.9e-33	87.50	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G102480 PE=4 SV=1	[more]
A0A5A7T9T6	2.4e-30	83.95	Carotenoid cleavage dioxygenase 7 OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]

BLAST of CsaV3_6G008740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015333	Pollen allergen ole e 6	PFAM	PF09253	Ole_e_6	coord: 45..82 e-value: 9.2E-11 score: 41.5
IPR015333	Pollen allergen ole e 6	PANTHER	PTHR35632	MAJOR POLLEN ALLERGEN OLE E 6-LIKE	coord: 1..84
IPR036466	Pollen allergen ole e 6 superfamily	GENE3D	1.10.287.720	Pollen allergen ole e 6	coord: 39..87 e-value: 5.0E-15 score: 56.8
IPR036466	Pollen allergen ole e 6 superfamily	SUPERFAMILY	111388	Pollen allergen ole e 6	coord: 39..81
None	No IPR available	PANTHER	PTHR35632:SF5	SUBFAMILY NOT NAMED	coord: 1..84

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G008740.1	CsaV3_6G008740.1	mRNA