CsaV3_6G008280 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G008280
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 6664408 .. 6665712 (+)
RNA-Seq ExpressionCsaV3_6G008280
SyntenyCsaV3_6G008280
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAGAAGATGGATGTGGACTAAGTCATGGTAGCTTGGTAGCTTTGAGCAATGATGGTTCTATCAATGGCGTAAAAAATGGGTGGCGCTGTAAATTCAACGAGCCGAGCCGACAGCAAAGACGAGGAACTTTTCAAGTTAGGTTTTATTCTCTTCGGTTTCCCTTTCTATTTCTAGCGTTTTATTTTCCACCATTTTCCCGGAAAATAATCGAAGTTATAAATCCCAAAACTTTGCTTTGTCCTACTCCCATTTCCCCATAGATTTCCCCCTTCTCTTCACCCTCACACCGTCTTTTCTCTGTTTTCAGTACTCCCATTTCCATCTTTATAATACCCACTTTGCCAAATCTGTTGTAATGTGAGTTTCTATCGTAATGGAGTTCTTAATCCTCGATTCTGAGCGTTTTCTGTTATATTTGATGCCTTTGAGCTGTCTTTGAATCTAAAATTTGTAAGGGTTTGTAATGATTTTTTTTTTTATTTTTTTATGTTAGATATTTCTAAATTTTGAGCTTCGTGGAGAAGTTTTATTGAGATTGGGTGGTATTTTTGAGTTCCAGAATCTTGGTGTTAGTAAGACTGCTAGATCCTTGCTACCTTTTTCTTTTATTCTTATTCACTATTGAACTATTTGTTTGGCTTTCTTGCATTGGGGTTTATCTTAACTTTGTGAAGAAGTTGTAATTTGGATTGTTCTTTGATAGTATAAAATGTGAATGATTTGAGCTTGATTTGGATCTGGTAACTCTGCTTATTGTTTTTAAAATATTTTGTTGACCTTTTGTTGTACTGGAAAACAATTCTTTAAGCTGAAATCAAGTCATTTTCTTACTCGAAATCCGTGCCTTTGGTGATTAATTCTTTATTAGGGAAAAAGAGTGGAAAAGTGGAGTTTAGTTCCTTATTTTAATTGTCATTACAGAATCTAAAAGTGCCAGGATGGAAGTTCTGTGCAGAACACCCTGGGCCTTTTTATTGTTATTTTATTCTTTTGGAAAAATTTTCAAGTATTAGGTGAGCACATGCTTTGTTATTTGGTCGTTTTCTCTCTCTTAATTTTTCATTATGAAGAGAAACCATGGAAATTAATCAAACATTGACAAGATGATAAAAAAAAACAATATGCAATGTTTCCTTACTCGAATGGACACTTCTATAACATTTGACGAATAACATAATTTAAGTAGATAAAGGAAATACCATTAGTGTTTTGATTATAGTTCGAAATTATTTGCTTTCATTTATGTTGTTTCTTACTCTAAATTATATGCTCATCAACCAATTTCAGGGGGATCAAAATAA

mRNA sequence

ATGGTAGAAGATGGATGTGGACTAAGTCATGGTAGCTTGGTAGCTTTGAGCAATGATGGTTCTATCAATGGCGTAAAAAATGGGTGGCGCTGTAAATTCAACGAGCCGAGCCGACAGCAAAGACGAGGAACTTTTCAAATATTTCTAAATTTTGAGCTTCGTGGAGAAGTTTTATTGAGATTGGGTGGTATTTTTGAGTTCCAGAATCTTGGTGTTAGGGGATCAAAATAA

Coding sequence (CDS)

ATGGTAGAAGATGGATGTGGACTAAGTCATGGTAGCTTGGTAGCTTTGAGCAATGATGGTTCTATCAATGGCGTAAAAAATGGGTGGCGCTGTAAATTCAACGAGCCGAGCCGACAGCAAAGACGAGGAACTTTTCAAATATTTCTAAATTTTGAGCTTCGTGGAGAAGTTTTATTGAGATTGGGTGGTATTTTTGAGTTCCAGAATCTTGGTGTTAGGGGATCAAAATAA

Protein sequence

MVEDGCGLSHGSLVALSNDGSINGVKNGWRCKFNEPSRQQRRGTFQIFLNFELRGEVLLRLGGIFEFQNLGVRGSK*
Homology
[Close]
BLAST of CsaV3_6G008280 vs. NCBI nr
Match: KGN46467.1 (hypothetical protein Csa_005141 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MVEDGCGLSHGSLVALSNDGSINGVKNGWRCKFNEPSRQQRRGTFQIFLNFELRGEVLLR 60
          MVEDGCGLSHGSLVALSNDGSINGVKNGWRCKFNEPSRQQRRGTFQIFLNFELRGEVLLR
Sbjct: 1  MVEDGCGLSHGSLVALSNDGSINGVKNGWRCKFNEPSRQQRRGTFQIFLNFELRGEVLLR 60

Query: 61 LGGIFEFQNLGVRGSK 77
          LGGIFEFQNLGVRGSK
Sbjct: 61 LGGIFEFQNLGVRGSK 76

[Close]
BLAST of CsaV3_6G008280 vs. ExPASy TrEMBL
Match: A0A0A0KDM2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095340 PE=4 SV=1)

HSP 1 Score: 159.5 bits (402), Expect = 5.8e-36
Identity = 76/76 (100.00%), Postives = 76/76 (100.00%), Query Frame = 0 

Query: 1  MVEDGCGLSHGSLVALSNDGSINGVKNGWRCKFNEPSRQQRRGTFQIFLNFELRGEVLLR 60
          MVEDGCGLSHGSLVALSNDGSINGVKNGWRCKFNEPSRQQRRGTFQIFLNFELRGEVLLR
Sbjct: 1  MVEDGCGLSHGSLVALSNDGSINGVKNGWRCKFNEPSRQQRRGTFQIFLNFELRGEVLLR 60

Query: 61 LGGIFEFQNLGVRGSK 77
          LGGIFEFQNLGVRGSK
Sbjct: 61 LGGIFEFQNLGVRGSK 76

The following BLAST results are available for this feature:
BLAST of CsaV3_6G008280 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN46467.11.2e-35100.00hypothetical protein Csa_005141 [Cucumis sativus][more]
BLAST of CsaV3_6G008280 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G008280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDM25.8e-36100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095340 PE=4 SV=1[more]
BLAST of CsaV3_6G008280 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G008280.1CsaV3_6G008280.1mRNA