CsaV3_6G008240 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G008240
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Protein of unknown function (DUF 3339)
Location	chr6: 6621869 .. 6622081 (-)
RNA-Seq Expression	CsaV3_6G008240
Synteny	CsaV3_6G008240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTGGGGGCCTATCTTTGTAGCTGTGATTCTCTTTGTTTTGTTAACTCCAGGGCTGCTCTTTCAGCTCCCGGGCAATCGCCGGTGCTTAGAGTTTGGCAACTTTCACACCAGTGCTGCTGCTATTATCGTCCATTCGATTCTCTACTTTGGTCTCATTTGTGTCTTCTTACTTGCCATCAAGGTTCATCTCTATATTGGTTCCTAA

mRNA sequence

ATGGCAGATTGGGGGCCTATCTTTGTAGCTGTGATTCTCTTTGTTTTGTTAACTCCAGGGCTGCTCTTTCAGCTCCCGGGCAATCGCCGGTGCTTAGAGTTTGGCAACTTTCACACCAGTGCTGCTGCTATTATCGTCCATTCGATTCTCTACTTTGGTCTCATTTGTGTCTTCTTACTTGCCATCAAGGTTCATCTCTATATTGGTTCCTAA

Coding sequence (CDS)

ATGGCAGATTGGGGGCCTATCTTTGTAGCTGTGATTCTCTTTGTTTTGTTAACTCCAGGGCTGCTCTTTCAGCTCCCGGGCAATCGCCGGTGCTTAGAGTTTGGCAACTTTCACACCAGTGCTGCTGCTATTATCGTCCATTCGATTCTCTACTTTGGTCTCATTTGTGTCTTCTTACTTGCCATCAAGGTTCATCTCTATATTGGTTCCTAA

Protein sequence

MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLLAIKVHLYIGS*

Homology

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BLAST of CsaV3_6G008240 vs. NCBI nr
Match: XP_011656810.1 (uncharacterized protein LOC101208994 [Cucumis sativus] >KGN46463.1 hypothetical protein Csa_005508 [Cucumis sativus])

HSP 1 Score: 141.7 bits (356), Expect = 2.4e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]

BLAST of CsaV3_6G008240 vs. NCBI nr
Match: XP_022991385.1 (uncharacterized protein LOC111488037 isoform X2 [Cucurbita maxima] >XP_023514785.1 uncharacterized protein LOC111778992 [Cucurbita pepo subsp. pepo] >KAG7014656.1 hypothetical protein SDJN02_24835, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 141.0 bits (354), Expect = 4.0e-30
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]

BLAST of CsaV3_6G008240 vs. NCBI nr
Match: XP_008459846.1 (PREDICTED: uncharacterized protein LOC103498846 [Cucumis melo])

HSP 1 Score: 140.6 bits (353), Expect = 5.3e-30
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAA+IIVHSILYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]

BLAST of CsaV3_6G008240 vs. NCBI nr
Match: XP_038875875.1 (uncharacterized protein LOC120068234 [Benincasa hispida])

HSP 1 Score: 140.2 bits (352), Expect = 6.9e-30
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAA+IIVHSILYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]

BLAST of CsaV3_6G008240 vs. NCBI nr
Match: XP_022960371.1 (uncharacterized protein LOC111461116 [Cucurbita moschata] >XP_023004229.1 uncharacterized protein LOC111497623 [Cucurbita maxima] >XP_023513527.1 uncharacterized protein LOC111778105 [Cucurbita pepo subsp. pepo] >KAG7025376.1 hypothetical protein SDJN02_11871, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 2.6e-29
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          AIKVHLYIG
Sbjct: 61 AIKVHLYIG 69

[Close]

BLAST of CsaV3_6G008240 vs. ExPASy TrEMBL
Match: A0A0A0KAG8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095300 PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.1e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]

BLAST of CsaV3_6G008240 vs. ExPASy TrEMBL
Match: A0A6J1JSS9 (uncharacterized protein LOC111488037 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111488037 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 2.0e-30
Identity = 68/70 (97.14%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSVLYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]

BLAST of CsaV3_6G008240 vs. ExPASy TrEMBL
Match: A0A1S3CBL1 (uncharacterized protein LOC103498846 OS=Cucumis melo OX=3656 GN=LOC103498846 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 69/70 (98.57%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAA+IIVHSILYFGLICVFLL
Sbjct: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAASIIVHSILYFGLICVFLL 60

Query: 61 AIKVHLYIGS 71
          AIKVHLYIGS
Sbjct: 61 AIKVHLYIGS 70

[Close]

BLAST of CsaV3_6G008240 vs. ExPASy TrEMBL
Match: A0A6J1KVP8 (uncharacterized protein LOC111497623 OS=Cucurbita maxima OX=3661 GN=LOC111497623 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          AIKVHLYIG
Sbjct: 61 AIKVHLYIG 69

[Close]

BLAST of CsaV3_6G008240 vs. ExPASy TrEMBL
Match: A0A6J1H7E6 (uncharacterized protein LOC111461116 OS=Cucurbita moschata OX=3662 GN=LOC111461116 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 1.3e-29
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGP+FVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAI+VHS+LYFGLICVFLL
Sbjct: 1  MADWGPVFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIVVHSLLYFGLICVFLL 60

Query: 61 AIKVHLYIG 70
          AIKVHLYIG
Sbjct: 61 AIKVHLYIG 69

[Close]

BLAST of CsaV3_6G008240 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 111.7 bits (278), Expect = 2.4e-25
Identity = 49/69 (71.01%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          M+DWGP+ V VILFV+LTPGLLFQLPG ++ +EFGNF TSA ++IVHS+LYF L+CVFLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AIKVHLYIG 70
          A+K+H+YIG
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of CsaV3_6G008240 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 100.1 bits (248), Expect = 7.4e-22
Identity = 45/70 (64.29%), Postives = 59/70 (84.29%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGP+ VAVILFVLLTPGLLFQ+P   R +EFGN  TS A+I+VH+I++FGLI +F +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIKVHLYIGS 71
          AI++H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]

BLAST of CsaV3_6G008240 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 96.7 bits (239), Expect = 8.2e-21
Identity = 43/69 (62.32%), Postives = 57/69 (82.61%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          MADWGP+ +AVILFV+L+PGLLFQ+P   R +EFGN  TS A+I+VH+I++FGLI +F +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIKVHLYIG 70
          AI VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of CsaV3_6G008240 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 92.8 bits (229), Expect = 1.2e-19
Identity = 40/66 (60.61%), Postives = 54/66 (81.82%), Query Frame = 0


Query: 1  MADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLL 60
          M DWGP+FVAV LFVLLTPGLL Q+PG  R +EFG F TS  ++IVH+++YF L+C+ LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AIKVHL 67
          A+++H+
Sbjct: 61 ALQIHI 66

[Close]

BLAST of CsaV3_6G008240 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 86.7 bits (213), Expect = 8.4e-18
Identity = 39/67 (58.21%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 2  ADWGPIFVAVILFVLLTPGLLFQLPGNRRCLEFGNFHTSAAAIIVHSILYFGLICVFLLA 61
          ADWGP+ VAV+LFV+L+PGLLFQLP  RR LE GN  TS  +I+VH+IL+F +I + ++A
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IKVHLYI 69
          I++H++I
Sbjct: 64 IQIHIHI 70

The following BLAST results are available for this feature:

BLAST of CsaV3_6G008240 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011656810.1	2.4e-30	100.00	uncharacterized protein LOC101208994 [Cucumis sativus] >KGN46463.1 hypothetical ...	[more]
XP_022991385.1	4.0e-30	97.14	uncharacterized protein LOC111488037 isoform X2 [Cucurbita maxima] >XP_023514785...	[more]
XP_008459846.1	5.3e-30	98.57	PREDICTED: uncharacterized protein LOC103498846 [Cucumis melo]	[more]
XP_038875875.1	6.9e-30	97.14	uncharacterized protein LOC120068234 [Benincasa hispida]	[more]
XP_022960371.1	2.6e-29	95.65	uncharacterized protein LOC111461116 [Cucurbita moschata] >XP_023004229.1 unchar...	[more]

BLAST of CsaV3_6G008240 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G008240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KAG8	1.1e-30	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G095300 PE=4 SV=1	[more]
A0A6J1JSS9	2.0e-30	97.14	uncharacterized protein LOC111488037 isoform X2 OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A1S3CBL1	2.6e-30	98.57	uncharacterized protein LOC103498846 OS=Cucumis melo OX=3656 GN=LOC103498846 PE=...	[more]
A0A6J1KVP8	1.3e-29	95.65	uncharacterized protein LOC111497623 OS=Cucurbita maxima OX=3661 GN=LOC111497623...	[more]
A0A6J1H7E6	1.3e-29	95.65	uncharacterized protein LOC111461116 OS=Cucurbita moschata OX=3662 GN=LOC1114611...	[more]

BLAST of CsaV3_6G008240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	2.4e-25	71.01	Protein of unknown function (DUF 3339)	[more]
AT3G48660.1	7.4e-22	64.29	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	8.2e-21	62.32	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	1.2e-19	60.61	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G01940.1	8.4e-18	58.21	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 5.0E-34 score: 116.3
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF62	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G008240.1	CsaV3_6G008240.1	mRNA