CsaV3_6G007340 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G007340
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 6006617 .. 6007015 (-)
RNA-Seq ExpressionCsaV3_6G007340
SyntenyCsaV3_6G007340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGA

mRNA sequence

ATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGA

Coding sequence (CDS)

ATGGCTGTGGTGATTACACACACCTTTCCTCAATCTTCTTCACAAACCACACCATTCTCCCTTTTTCATCATCTTCTTCTTCTTCTTCTTCATTCTTCCCCTGTTTCCAATTCTCAACAACATCAATGGCGTCTCTTCAATCTCTGGCCTCCACTACTTCCCCGTCTTCTCCTCATCTCCTTCATCCCTCTTCCACCAAACCCAAACTCTCTTACTCTCTCCACAGCAGCGCCTTCTCCTCATTCCACGGCCGCTCTCTTTCCCTCTCCACCACCAAATGCCACACACTCACTCGCCGCACTTACCGACAACGTTCATGGAACCCCATCCTCATGGTTCTGCCCAAGATTCAGTTCATCCAGGGCACGGACGAGCAGACAATCCCGGATGTGCGGCTGA

Protein sequence

MAVVITHTFPQSSSQTTPFSLFHHLLLLLLHSSPVSNSQQHQWRLFNLWPPLLPRLLLISFIPLPPNPNSLTLSTAAPSPHSTAALFPSPPPNATHSLAALTDNVHGTPSSWFCPRFSSSRARTSRQSRMCG*
Homology
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BLAST of CsaV3_6G007340 vs. NCBI nr
Match: KAE8646739.1 (hypothetical protein Csa_005708 [Cucumis sativus])

HSP 1 Score: 266.2 bits (679), Expect = 1.6e-67
Identity = 132/132 (100.00%), Postives = 132/132 (100.00%), Query Frame = 0 

Query: 1   MAVVITHTFPQSSSQTTPFSLFHHLLLLLLHSSPVSNSQQHQWRLFNLWPPLLPRLLLIS 60
           MAVVITHTFPQSSSQTTPFSLFHHLLLLLLHSSPVSNSQQHQWRLFNLWPPLLPRLLLIS
Sbjct: 1   MAVVITHTFPQSSSQTTPFSLFHHLLLLLLHSSPVSNSQQHQWRLFNLWPPLLPRLLLIS 60

Query: 61  FIPLPPNPNSLTLSTAAPSPHSTAALFPSPPPNATHSLAALTDNVHGTPSSWFCPRFSSS 120
           FIPLPPNPNSLTLSTAAPSPHSTAALFPSPPPNATHSLAALTDNVHGTPSSWFCPRFSSS
Sbjct: 61  FIPLPPNPNSLTLSTAAPSPHSTAALFPSPPPNATHSLAALTDNVHGTPSSWFCPRFSSS 120

Query: 121 RARTSRQSRMCG 133
           RARTSRQSRMCG
Sbjct: 121 RARTSRQSRMCG 132

The following BLAST results are available for this feature:
BLAST of CsaV3_6G007340 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646739.11.6e-67100.00hypothetical protein Csa_005708 [Cucumis sativus][more]
BLAST of CsaV3_6G007340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G007340 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G007340 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G007340.1CsaV3_6G007340.1mRNA