CsaV3_6G006410 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G006410
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Tubulin-specific chaperone A
Location	chr6: 5351683 .. 5354610 (-)
RNA-Seq Expression	CsaV3_6G006410
Synteny	CsaV3_6G006410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCATCTTGTATTGATTCACAAATCATCCACGTGTAGTGACTAAATTCTAAAATATGTGACTATTCAATCTCTGAGATGAAAAATTCCATCAAATTAAGTCTTAAATTACTTTAATTCATGCGCTATTAACTTTGGTTTATTTTAGTGTCACACTCTTGAAAAGAAACTACTAGCTTCATTCCAAAGAGAAAACTAACAGGGTCAATTTTTTTGAAGGACCAAAGAGACATTTTCAAATCTGAAAGTACCAAAGAATCTACCAATTATTGTGGCAGCTCTGCGGTTGGCTCAAGTATTCTCACTTTAAAGTTCTTCTTCTTCACGGGAAAAAACACCTCCCACGCTCTCTCTCTGCGCGCCGCTCAACTTGCCGGATCTCCCTCTCACTCTAGCGATTATCTCTCTCGCCGGACGTCGACTCCCAGCTGTGCACGTACGAACTCCCTCCCGGCCGCGTTTCTTCCGTCTATACCGCCAAACCCGAGCACTGGTTTTTCTGGCTCGCCCCCTGCTATTCTTTGCGCCGCTGGGTCTTATCGTCGCTATTCTCACCGGATCTTGGCTTTGGGGTAAGATTTATTTGATGTGGTTGGGTTTTGTGGAAGATTTTTGAACACCCATTGAACGTTGGCTTCTTCAAATTAGTGATACCCTTAGATGTTCGGTTTGATGCTAAATTTACTCATGATTTTGAAATGCTAGAATTCGAATTAGAAGAATGTTAGTGGGCTGCTCACGAAGTTAAGACGAACTTTTGCAGTGTTGGGTAATTTTAGTGAGTTTTCATAGAGTGTTATTGAATACCCATAATTTTTTTTTTACCCAAATTGATTGACGTTCTTCGTGTTTCGGCTTTAGATTCAAAATTTGGAGAACATTAATGTACTATCCAGCGGGTTACGATTAATGTTGGGAAGATTTTGGTTAAAACGAAGTGGGTAGAGCTTATAATCCCATAAGATCAAGCCATTGACAGTGGGTGGTTTATTTGTAAGTTGTTTGGGATCGGGATGATACTTGAGGGTGTCTGTACACTCTGTAGTTTGGATATCGTAAGTCCTAGAAATGAAAACTTCACCTCTTTTTCAGGAGTGGTTAATCAATTATTTAACAGCCCCTACTCCCTTGTTTTAGAAAAGTGTTTTTAGATAGTGTCTTGTCATAGATCCAGGTTAGAAAGATAATCTGAAATGGCTTATGACAACTTACCTCCATGATACAAGAAATTTCGTGGAAAAGCTGACGTTGAGAACATGCTCCCAGTCTGAATTTTCAATAGCATCCAGGGGTTTAAGATAGAATGTGTACTAATTAATTACCATGAATTCCCACGACCCTTAACAAACTTTAAGAATATGATAACATTGTTTCATAATGGAGCCCCAATTTTCATGCTTTTATGGGAACTGAGAAGCAAAATATTGTCTCTCTTAGAAGCTTCAATTCGGTGAATTAGGTTTATCCTAACTGGGAGACTTGTGGATTCCAAATCCATGATAAATGCTTTTGGTGATAGGTCAGTATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGTATGTAAGTAGTGGGTTGTATTCTTAATAATCAAAACTTCAAAAGTTGATAATTATTTGCTTTGACTGCTTGTGGATTTGTTTGTGCCATCTGAAGACCTTAAATAGAAATTCTTAGACATTCAAAAATATAAATTTTTTACCTTAAACAACAGGTATGTAAATGATTTGCATTCTTAATAATCAAAAGTTTGTATGATTATTGTCTGCTTGACTGCTTGTGGATTTGTTTGTGCCATCATTGAGTGAATATATTAAGAAGGATTTTAGCCATTCAAAACCTTTTAATAGACAGAAATCTCCAACATTACACAATAGGAACAATCAAATTTGTGAGCTTAAAGATAAGCGTTTTAAACTAAAAAAAAGAATAATAATATTGTTGAATTTGGAACTTAGAGATGGTTTTCAGGGTAGGACTTTAGCAATTGTTTTTAAGCCTTTAAATTTCTTGTTGCCGTTGAACTTTATTCTAGATATAGAATCAAAACGACTAAAATTTTATTTAGGATAATGGAGATTGGATGTAATGCCATCATCATACAAATCTTCTTCTTCAATTGGTTAAGTATTTTATTACGATTTTACAATTAGCATTCTCATTATAATTAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGTATCAATAATCATTACCTTCACTTTTCATTCTTCCCATTCTTGCACTTCTGAGGAAAGCTTGATATGAAGGTTATCTGAATAATCATTTTTTCATCTTCTTCATCTACAGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGATTGTTTTCAGAAGTTATAATTCAAACTATTGCTTTATTACAGTATTAGTTTTCAATGTTTGGTTTTTGGATGTTATGGTTATACTTTGGAAAGAGTTTCTTCTTCTGTTCTTCATTACTATCACCCAAGTGTAAGACTAAACTCTTCTTCTGTTCTACGTAAGCGTTAATGATGATTAATATGAGAGTTTGGTAACTAAAATAAAT

mRNA sequence

ATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGA

Coding sequence (CDS)

ATGGCTACTGTAAAGAACCTTAAAATTAAGACAGCTACCTGCAAACGCATTCTCAAGGAGTTGTTTTCTTATGAGAAGGAGGTTGAGAGAGAAGCTGCCAAAACTGCTGACATGAAAGAAAAAGGTGCTGACCCTTATGACCTTAAACAACAGGAAAATGTGCTGGCTGAATCAAGGATGATGGTTCCCGATTGTCACAAGCGTCTAGAGTTTGCCTTAGCTGATCTGAAAGATGCCCTGGCTGAACTGGAAAAATCAACACAAGAGAAAGGTCCAGAGTTCGACGATGCTCGGAGTACAATCAACGATGTTGAAAGTTTCCTAAAGCCAATAGAGGAATTGTGTAGTGGGTCTGTCACCGCCTGA

Protein sequence

MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVTA*

Homology

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BLAST of CsaV3_6G006410 vs. NCBI nr
Match: XP_004145016.1 (tubulin-folding cofactor A isoform X2 [Cucumis sativus] >XP_011656707.1 tubulin-folding cofactor A isoform X2 [Cucumis sativus] >XP_031743287.1 tubulin-folding cofactor A isoform X2 [Cucumis sativus] >XP_031743288.1 tubulin-folding cofactor A isoform X2 [Cucumis sativus] >XP_031743289.1 tubulin-folding cofactor A isoform X2 [Cucumis sativus] >KAE8646706.1 hypothetical protein Csa_005119 [Cucumis sativus])

HSP 1 Score: 233.8 bits (595), Expect = 7.9e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 120
           MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT
Sbjct: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 120

Query: 121 A 122
           A
Sbjct: 121 A 121

[Close]

BLAST of CsaV3_6G006410 vs. NCBI nr
Match: TYK24522.1 (tubulin-folding cofactor A [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 2.1e-50
Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 128 MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 187

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK+ALAELEKST+EKGPEFDDARSTIND+ESFLKP EE
Sbjct: 188 MVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDARSTINDIESFLKPTEE 240

[Close]

BLAST of CsaV3_6G006410 vs. NCBI nr
Match: KAA0039980.1 (tubulin-folding cofactor A [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 2.1e-50
Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK+ALAELEKST+EKGPEFDDARSTIND+ESFLKP EE
Sbjct: 61  MVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]

BLAST of CsaV3_6G006410 vs. NCBI nr
Match: XP_008460084.1 (PREDICTED: tubulin-folding cofactor A [Cucumis melo] >XP_008460085.1 PREDICTED: tubulin-folding cofactor A [Cucumis melo])

HSP 1 Score: 208.0 bits (528), Expect = 4.6e-50
Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK+ALA+LEKST+EKGPEFDDARSTIND+ESFLKP EE
Sbjct: 61  MVPDCHKRLEVALADLKEALADLEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]

BLAST of CsaV3_6G006410 vs. NCBI nr
Match: XP_022155762.1 (tubulin-folding cofactor A [Momordica charantia])

HSP 1 Score: 193.0 bits (489), Expect = 1.5e-45
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           M+PDCHKRLE +LADLK ALAELE+STQEKGPEFD+ARSTI++VE+FLK  EE
Sbjct: 61  MIPDCHKRLEASLADLKGALAELEESTQEKGPEFDNARSTISEVENFLKTTEE 113

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy Swiss-Prot
Match: O04350 (Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2)

HSP 1 Score: 166.4 bits (420), Expect = 2.0e-40
Identity = 82/105 (78.10%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           M+PDCHKRLE ALADLK  LAELE++ +++GPE +DA+ T+ DVE
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVE 105

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy Swiss-Prot
Match: P80585 (Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 5.6e-14
Identity = 45/102 (44.12%), Postives = 63/102 (61.76%), Query Frame = 0


Query: 4   VKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           ++ +KIKT   KR+ KE   YEKE +++  K   MK +  D Y +K+Q  +L ESRMM+P
Sbjct: 6   LRQIKIKTGVVKRLAKEKVMYEKEAKQQEEKIEKMKAEACDDYGIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           DC +RLE A ADL   L E EK  +E   E+ +ARS +  V+
Sbjct: 66  DCQRRLEIAHADLTQ-LLENEKELEE-AEEYKEARSILESVK 105

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy Swiss-Prot
Match: O75347 (Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-13
Identity = 43/102 (42.16%), Postives = 65/102 (63.73%), Query Frame = 0


Query: 4   VKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   M+ +  + YD+K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           DC +RLE A  DL+  L E EK  +E   E+ +AR  ++ V+
Sbjct: 66  DCQRRLEAAYLDLQRIL-ENEKDLEE-AEEYKEARLVLDSVK 105

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy Swiss-Prot
Match: Q6PEC1 (Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 2.8e-13
Identity = 43/102 (42.16%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 4   VKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   KR++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVKRLVKEKVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           DC +RLE A  DL+  L E EK  +E   E+ +AR  ++ V+
Sbjct: 66  DCQRRLEAAYTDLRQIL-ESEKDLEE-AEEYKEARIVLDSVK 105

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy Swiss-Prot
Match: P48428 (Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 8.0e-13
Identity = 42/102 (41.18%), Postives = 64/102 (62.75%), Query Frame = 0


Query: 4   VKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRMMVP 63
           V+ +KIKT   +R++KE   YEKE +++  K   MK +  + Y +K+Q  +L ESRMM+P
Sbjct: 6   VRQIKIKTGVVRRLVKERVMYEKEAKQQEEKIEKMKAEDGENYAIKKQAEILQESRMMIP 65

Query: 64  DCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           DC +RLE A  DL+  L E EK  +E   E+ +AR  ++ V+
Sbjct: 66  DCQRRLEAAYTDLQQIL-ESEKDLEE-AEEYKEARVVLDSVK 105

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy TrEMBL
Match: A0A0A0KER0 (Tubulin-specific chaperone A OS=Cucumis sativus OX=3659 GN=Csa_6G078610 PE=3 SV=1)

HSP 1 Score: 233.8 bits (595), Expect = 3.8e-58
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 129 MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 188

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 120
           MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT
Sbjct: 189 MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEELCSGSVT 248

Query: 121 A 122
           A
Sbjct: 249 A 249

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy TrEMBL
Match: A0A5D3DLX2 (Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00640 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 128 MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 187

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK+ALAELEKST+EKGPEFDDARSTIND+ESFLKP EE
Sbjct: 188 MVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDARSTINDIESFLKPTEE 240

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy TrEMBL
Match: A0A5A7T9L5 (Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold122G002620 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.0e-50
Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK+ALAELEKST+EKGPEFDDARSTIND+ESFLKP EE
Sbjct: 61  MVPDCHKRLEVALADLKEALAELEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy TrEMBL
Match: A0A1S3CBQ5 (Tubulin-specific chaperone A OS=Cucumis melo OX=3656 GN=LOC103499001 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.2e-50
Identity = 106/113 (93.81%), Postives = 111/113 (98.23%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATVKNLKIKTATCKRILKELFSYEKEVEREA+KTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREASKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           MVPDCHKRLE ALADLK+ALA+LEKST+EKGPEFDDARSTIND+ESFLKP EE
Sbjct: 61  MVPDCHKRLEVALADLKEALADLEKSTEEKGPEFDDARSTINDIESFLKPTEE 113

[Close]

BLAST of CsaV3_6G006410 vs. ExPASy TrEMBL
Match: A0A6J1DQ83 (Tubulin-specific chaperone A OS=Momordica charantia OX=3673 GN=LOC111022807 PE=3 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 7.5e-46
Identity = 99/113 (87.61%), Postives = 108/113 (95.58%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MATV+NLKIKTATCKRI+KEL SYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM
Sbjct: 1   MATVRNLKIKTATCKRIIKELHSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVESFLKPIEE 114
           M+PDCHKRLE +LADLK ALAELE+STQEKGPEFD+ARSTI++VE+FLK  EE
Sbjct: 61  MIPDCHKRLEASLADLKGALAELEESTQEKGPEFDNARSTISEVENFLKTTEE 113

[Close]

BLAST of CsaV3_6G006410 vs. TAIR 10
Match: AT2G30410.1 (tubulin folding cofactor A (KIESEL) )

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-41
Identity = 82/105 (78.10%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           M+PDCHKRLE ALADLK  LAELE++ +++GPE +DA+ T+ DVE
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVE 105

[Close]

BLAST of CsaV3_6G006410 vs. TAIR 10
Match: AT2G30410.2 (tubulin folding cofactor A (KIESEL) )

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-41
Identity = 82/105 (78.10%), Postives = 96/105 (91.43%), Query Frame = 0


Query: 1   MATVKNLKIKTATCKRILKELFSYEKEVEREAAKTADMKEKGADPYDLKQQENVLAESRM 60
           MAT++NLKIKT+TCKRI+KEL SYEKEVEREAAKTADMK+KGADPYDLKQQENVL ESRM
Sbjct: 1   MATIRNLKIKTSTCKRIVKELHSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRM 60

Query: 61  MVPDCHKRLEFALADLKDALAELEKSTQEKGPEFDDARSTINDVE 106
           M+PDCHKRLE ALADLK  LAELE++ +++GPE +DA+ T+ DVE
Sbjct: 61  MIPDCHKRLESALADLKSTLAELEETDEKEGPEIEDAKKTVADVE 105

The following BLAST results are available for this feature:

BLAST of CsaV3_6G006410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145016.1	7.9e-58	100.00	tubulin-folding cofactor A isoform X2 [Cucumis sativus] >XP_011656707.1 tubulin-...	[more]
TYK24522.1	2.1e-50	94.69	tubulin-folding cofactor A [Cucumis melo var. makuwa]	[more]
KAA0039980.1	2.1e-50	94.69	tubulin-folding cofactor A [Cucumis melo var. makuwa]	[more]
XP_008460084.1	4.6e-50	93.81	PREDICTED: tubulin-folding cofactor A [Cucumis melo] >XP_008460085.1 PREDICTED: ...	[more]
XP_022155762.1	1.5e-45	87.61	tubulin-folding cofactor A [Momordica charantia]	[more]

BLAST of CsaV3_6G006410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04350	2.0e-40	78.10	Tubulin-folding cofactor A OS=Arabidopsis thaliana OX=3702 GN=TFCA PE=1 SV=2	[more]
P80585	5.6e-14	44.12	Tubulin-specific chaperone A OS=Gallus gallus OX=9031 GN=TBCA PE=1 SV=2	[more]
O75347	2.8e-13	42.16	Tubulin-specific chaperone A OS=Homo sapiens OX=9606 GN=TBCA PE=1 SV=3	[more]
Q6PEC1	2.8e-13	42.16	Tubulin-specific chaperone A OS=Rattus norvegicus OX=10116 GN=Tbca PE=1 SV=1	[more]
P48428	8.0e-13	41.18	Tubulin-specific chaperone A OS=Mus musculus OX=10090 GN=Tbca PE=1 SV=3	[more]

BLAST of CsaV3_6G006410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KER0	3.8e-58	100.00	Tubulin-specific chaperone A OS=Cucumis sativus OX=3659 GN=Csa_6G078610 PE=3 SV=...	[more]
A0A5D3DLX2	1.0e-50	94.69	Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca...	[more]
A0A5A7T9L5	1.0e-50	94.69	Tubulin-specific chaperone A OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A1S3CBQ5	2.2e-50	93.81	Tubulin-specific chaperone A OS=Cucumis melo OX=3656 GN=LOC103499001 PE=3 SV=1	[more]
A0A6J1DQ83	7.5e-46	87.61	Tubulin-specific chaperone A OS=Momordica charantia OX=3673 GN=LOC111022807 PE=3...	[more]

BLAST of CsaV3_6G006410 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G30410.1	1.4e-41	78.10	tubulin folding cofactor A (KIESEL)	[more]
AT2G30410.2	1.4e-41	78.10	tubulin folding cofactor A (KIESEL)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..89
None	No IPR available	GENE3D	1.20.58.90		coord: 1..113 e-value: 6.1E-41 score: 141.1
None	No IPR available	PANTHER	PTHR21500:SF4	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113
IPR004226	Tubulin binding cofactor A	PFAM	PF02970	TBCA	coord: 7..86 e-value: 6.4E-27 score: 93.7
IPR004226	Tubulin binding cofactor A	PANTHER	PTHR21500	TUBULIN-SPECIFIC CHAPERONE A	coord: 1..113
IPR036126	Tubulin binding cofactor A superfamily	SUPERFAMILY	46988	Tubulin chaperone cofactor A	coord: 3..104

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G006410.1	CsaV3_6G006410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007023	post-chaperonin tubulin folding pathway
biological_process	GO:0007021	tubulin complex assembly
molecular_function	GO:0048487	beta-tubulin binding