CsaV3_6G005710 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G005710
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6: 4894035 .. 4894243 (+)
RNA-Seq ExpressionCsaV3_6G005710
SyntenyCsaV3_6G005710
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAAAGAGAAATTCCAAAACAGTATCAGGCTCAAAGAACTACAGTAATAATGGAGATCATAAACTAATTCTACAAGCGAAAAACCTCACTCGCCAGTACCTCAACTCTACAATGTCGAAACGAAACTTAATCACAAAAACAGATTCATCAAACTCAGCAGCAGAAATCAGAGCTTCGAACGAGAAAACTGCATCGATTCAAGAAAC

mRNA sequence

ATGAAAAAGAGAAATTCCAAAACAGTATCAGGCTCAAAGAACTACAGTAATAATGGAGATCATAAACTAATTCTACAAGCGAAAAACCTCACTCGCCAGTACCTCAACTCTACAATGTCGAAACGAAACTTAATCACAAAAACAGATTCATCAAACTCAGCAGCAGAAATCAGAGCTTCGAACGAGAAAACTGCATCGATTCAAGAAAC

Coding sequence (CDS)

ATGAAAAAGAGAAATTCCAAAACAGTATCAGGCTCAAAGAACTACAGTAATAATGGAGATCATAAACTAATTCTACAAGCGAAAAACCTCACTCGCCAGTACCTCAACTCTACAATGTCGAAACGAAACTTAATCACAAAAACAGATTCATCAAACTCAGCAGCAGAAATCAGAGCTTCGAACGAGAAAACTGCATCGATTCAAGAAAC

Protein sequence

MKKRNSKTVSGSKNYSNNGDHKLILQAKNLTRQYLNSTMSKRNLITKTDSSNSAAEIRASNEKTASIQEX
Homology
[Close]
BLAST of CsaV3_6G005710 vs. NCBI nr
Match: KAE8646686.1 (hypothetical protein Csa_005202, partial [Cucumis sativus])

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 1  MKKRNSKTVSGSKNYSNNGDHKLILQAKNLTRQYLNSTMSKRNLITKTDSSNSAAEIRAS 60
          MKKRNSKTVSGSKNYSNNGDHKLILQAKNLTRQYLNSTMSKRNLITKTDSSNSAAEIRAS
Sbjct: 1  MKKRNSKTVSGSKNYSNNGDHKLILQAKNLTRQYLNSTMSKRNLITKTDSSNSAAEIRAS 60

Query: 61 NEKTASIQE 70
          NEKTASIQE
Sbjct: 61 NEKTASIQE 69

The following BLAST results are available for this feature:
BLAST of CsaV3_6G005710 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8646686.11.7e-25100.00hypothetical protein Csa_005202, partial [Cucumis sativus][more]
BLAST of CsaV3_6G005710 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G005710 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G005710 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 45..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G005710.1CsaV3_6G005710.1mRNA