CsaV3_6G005420 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G005420
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Unknown protein
Location	chr6: 4650828 .. 4651451 (-)
RNA-Seq Expression	CsaV3_6G005420
Synteny	CsaV3_6G005420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAAAACAAAACAAAATGAAGTCTTCGATGTCTTCTCTCCTTTTCGCCATTTTGGTGACATTATTACTCCTTTCTTCAAGCTTCCTGTCCCTTGTTGATGCCCACTCTTCTCCGTTCAAAAATCGTCATCGCCATCGCCACCACAGAAAATATCTTCCACCACCGCCACTATGTGGAACTGTTGCACGCCCGCCGCCTCCCCCACCGCCCAAGTTTCAATGGCCTCCCAATCACGTCAAAAAGTCCCCGCCACCTCCCTTCTAGATTTGTTGGGCGTATTTCGAGCTGTGTATTTGATTCAAACAGGTAAATAATATTTTGAAAAATAAGTGAGAAGAATTTTTCTCAGATGCATTTTAAGGGAAAAAAGTTTAATATTAGTTTCGACATAGGTGAGATATGATATTAAAAAAGAAGCATTTGTCACAGAAAGGAGGAGGCTTCTGCTCCTTATACGAAGCATCAATAATGTTAAAAGGATTGTTTTTTCTTTCTCATTGAATTTGTTATGGAACTTTTTTCTTTCTATTTTAGTTTTGTTACATTTGGCCGGATCATAATAAACTCTATTTTAATATATTGAATACGAACTCAATCAATTAATTAAGTGACACCTAGTTGGG

mRNA sequence

ATGAAGTCTTCGATGTCTTCTCTCCTTTTCGCCATTTTGGTGACATTATTACTCCTTTCTTCAAGCTTCCTGTCCCTTGTTGATGCCCACTCTTCTCCGTTCAAAAATCGTCATCGCCATCGCCACCACAGAAAATATCTTCCACCACCGCCACTATGTGGAACTGTTGCACGCCCGCCGCCTCCCCCACCGCCCAAGTTTCAATGGCCTCCCAATCACGTCAAAAAGTCCCCGCCACCTCCCTTCTAG

Coding sequence (CDS)

ATGAAGTCTTCGATGTCTTCTCTCCTTTTCGCCATTTTGGTGACATTATTACTCCTTTCTTCAAGCTTCCTGTCCCTTGTTGATGCCCACTCTTCTCCGTTCAAAAATCGTCATCGCCATCGCCACCACAGAAAATATCTTCCACCACCGCCACTATGTGGAACTGTTGCACGCCCGCCGCCTCCCCCACCGCCCAAGTTTCAATGGCCTCCCAATCACGTCAAAAAGTCCCCGCCACCTCCCTTCTAG

Protein sequence

MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPLCGTVARPPPPPPPKFQWPPNHVKKSPPPPF*

Homology

[Close]

BLAST of CsaV3_6G005420 vs. NCBI nr
Match: KGN46160.1 (hypothetical protein Csa_005439 [Cucumis sativus])

HSP 1 Score: 158.7 bits (400), Expect = 2.2e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPLCGTVARPP 60
          MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPLCGTVARPP
Sbjct: 1  MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPLCGTVARPP 60

Query: 61 PPPPPKFQWPPNHVKKSPPPPF 83
          PPPPPKFQWPPNHVKKSPPPPF
Sbjct: 61 PPPPPKFQWPPNHVKKSPPPPF 82

[Close]

BLAST of CsaV3_6G005420 vs. NCBI nr
Match: KAG6578900.1 (hypothetical protein SDJN03_23348, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 59.3 bits (142), Expect = 1.8e-05
Identity = 41/70 (58.57%), Postives = 45/70 (64.29%), Query Frame = 0


Query: 16  LLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPLCGTVARPPP---PPPPKFQWPPN 75
           +L+LS  F S VDA SS        RHHRK LPPPP       PPP   PPPPKFQWPP+
Sbjct: 72  VLILSLGFPSAVDARSS--------RHHRKTLPPPP-----PPPPPNPSPPPPKFQWPPD 128

Query: 76  HVKKSPPPPF 83
            V+KSPPPPF
Sbjct: 132 FVRKSPPPPF 128

[Close]

BLAST of CsaV3_6G005420 vs. ExPASy TrEMBL
Match: A0A0A0K8T1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G059230 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 82/82 (100.00%), Postives = 82/82 (100.00%), Query Frame = 0


Query: 1  MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPLCGTVARPP 60
          MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPLCGTVARPP
Sbjct: 1  MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPLCGTVARPP 60

Query: 61 PPPPPKFQWPPNHVKKSPPPPF 83
          PPPPPKFQWPPNHVKKSPPPPF
Sbjct: 61 PPPPPKFQWPPNHVKKSPPPPF 82

The following BLAST results are available for this feature:

BLAST of CsaV3_6G005420 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN46160.1	2.2e-35	100.00	hypothetical protein Csa_005439 [Cucumis sativus]	[more]
KAG6578900.1	1.8e-05	58.57	hypothetical protein SDJN03_23348, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CsaV3_6G005420 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CsaV3_6G005420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8T1	1.1e-35	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G059230 PE=4 SV=1	[more]

BLAST of CsaV3_6G005420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..82

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G005420.1	CsaV3_6G005420.1	mRNA