CsaV3_6G005340 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G005340
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	Chlorophyll a-b binding protein, chloroplastic
Location	chr6: 4530953 .. 4533334 (-)
RNA-Seq Expression	CsaV3_6G005340
Synteny	CsaV3_6G005340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTAATTTTCTTCACATGAAACAATAGTATTCTGGCCACTCCAAGCACAACAGTTCCTTCAAAAAAATATAAAATGATATGTAAATTTTCAAAATTGACATCTTAATTCAGCAAACAAAAATAGTTGTTTAAAAACTAGACTTATTTAGTTTACAAAAACTTGCACTAGATATCCTCACTTAATCACTAGTTCTACACCCAAAATATAGACTAAATAACTTCGCATCTAATATACAAATTTACCAAACTCAACTCCGCATCTCAAGTGAAAAAAGATTTCTTTAACCCAAAAGAAGACGTTGGGGCATTAACTTTTCAAAGTGGATTTGGCTTCATAGTAGAAAATTGGGAGTGAAACATGAGGCTGAAAAAGGGCTAACAAAGAGAGCGATCGTCCACGTGGTTGGCAGTCAAGTGGTCTTTAAAGAAGAGGATGAAGAACTTGTTTCCCATTGGTCCGAAATCTATCCAACACCCTCCTATTAGATTTCCCTTCCAGATTCTCATCTTCATGATTCCTACTTGGCTCCATTTAAACCCACAATTCAATTCACAATATCTCCCACACACCCTCTTCTTCATCATATCATATAACACATTCCATTACATACCTGAAATCTCCCATCTCAAAAACCATGGCTGCAACTTCTGGTGCTGTGCTTACTGGATTGGGCTCACCCTTCCTCCGTGGAAGTAGCAGAACTCGGACCTTGCTGGCCGGAGCTAGAGGTAGTGTCAATGTTGTCAGCTCTAGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCTAAGAAGTCTTGGCTCCCTGGTGTTAGAGGTGGTGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCGTATGTTTCTTTTACTTTCTTTAAGTTAGCACATAGGTTATTGTTTTGAACCTGCAGTTGGAAGATAGGATTTTAGTCCTAGTTTAAGTTACTTTGGACTGGAATTAAACAGGGGTAGAAAATTAGGGAACAAAATTGTTATCAAACATGTTCTAAGCAACTGTTGTGGAGAATTTGGTATAGGCATTTTATCGAACGTTTTTAGAGCAGCATTCTTGAAAAGATATGGGAAAGGCATTTTATCAAACGGTTTCTAGGTAATTACCATCTAGAATCTGGCATAGCATTTCATCGAACATTTTCAAAGCAGTTACTCTTAGCAATCTAGAACAGTCACTTAATCAAACATTTTCTAAGCAACCATAGTTGAAAACTTTAGAAGAGATATTTAAACGAACACTTGCTAAGCAACCATAGTAAGTTGATAAGCAATTACTTGTTCCATTCGTAGACTTCCAGGTGACTACGGCTTCGACCCATTGGGTTTGGGGAAGGACCCTGCATTTTTGAAGTGGTATAGAGAAGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTCGGACAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTTCTAGGAACCCAGCTTCTGCTAATGGGATGGGTTGAAAGCAAACGATGGGTGGATTTCTTCAACCCAGAATCTCAATCGGTGGAATGGGCTACACCATGGTCGAGGACGGCAGAGAATTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTCTTAAAGATGGGGTTTACATTGCAGACACGGAGAAATTGGAGAGATTGAAGTTGGCAGAAATCAAGCATGCTAGGATCGCCATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAAACACCATTGGGTGCTCTTGGATTGTAAAAACAAAAAAAAATGTTGATGTGAAGATAAAATTGTTCATAATTTCACTAAGAAAAAAAAGGGATTGAACATGTGTTGATGATTTTGAGATAGATTTTGAAAGGGGTTTTGTTGGAGCCCTAAAATCAGAACTTCAAAATTGAGTGTGTGCCATTTCCAAAGTCTACACTTTGCGTTGTTTCAATTCTTAGTTTATTGAATCGCTTAAAGTCGATGGTGTTCATTAGGGGCTGGCAATTGATAACCTTGTTCATGTTACAAGTCTGTAAGAGGACGTTTGGAACGTGAAGTAAATTATTATAACATATTGTTATTATAATATGTGAGTTATGATAGTTTATGAGTTATTATAATCTGTGTTTGGGTGCAGATTATTATAATTTATGTTTGGAAAAGTAAAGAACGAAATGAGGTAGTGAAGAACGAAATGAGGTAGTGAAGAATAGTGACACAGGCGAGAGATGAAACGTGGGAAATAGTAAAAAGGGAAGAGTGAGGAATAGGAGTAATGAAATTTTGTTTTAAA

mRNA sequence

ATGGCTGCAACTTCTGGTGCTGTGCTTACTGGATTGGGCTCACCCTTCCTCCGTGGAAGTAGCAGAACTCGGACCTTGCTGGCCGGAGCTAGAGGTAGTGTCAATGTTGTCAGCTCTAGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCTAAGAAGTCTTGGCTCCCTGGTGTTAGAGGTGGTGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCACTTCCAGGTGACTACGGCTTCGACCCATTGGGTTTGGGGAAGGACCCTGCATTTTTGAAGTGGTATAGAGAAGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTCGGACAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTTCTAGGAACCCAGCTTCTGCTAATGGGATGGGTTGAAAGCAAACGATGGGTGGATTTCTTCAACCCAGAATCTCAATCGGTGGAATGGGCTACACCATGGTCGAGGACGGCAGAGAATTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTCTTAAAGATGGGGTTTACATTGCAGACACGGAGAAATTGGAGAGATTGAAGTTGGCAGAAATCAAGCATGCTAGGATCGCCATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAAACACCATTGGGTGCTCTTGGATTGTAA

Coding sequence (CDS)

ATGGCTGCAACTTCTGGTGCTGTGCTTACTGGATTGGGCTCACCCTTCCTCCGTGGAAGTAGCAGAACTCGGACCTTGCTGGCCGGAGCTAGAGGTAGTGTCAATGTTGTCAGCTCTAGCAAGCTTGTCATCGTCGCTGCTGCTCAGCCTAAGAAGTCTTGGCTCCCTGGTGTTAGAGGTGGTGGCAACTTGGTCGACCCAGAATGGCTTGATGGCTCACTTCCAGGTGACTACGGCTTCGACCCATTGGGTTTGGGGAAGGACCCTGCATTTTTGAAGTGGTATAGAGAAGCAGAGCTGATCCACGGGCGGTGGGCAATGGCAGCAGTGGTCGGAATCTTCGTCGGACAAGCCTGGAGTGGAATCCCATGGTTCGAAGCCGGAGCAGATCCAGGCGCAATTGCTCCATTCTCCTTCGGATCACTTCTAGGAACCCAGCTTCTGCTAATGGGATGGGTTGAAAGCAAACGATGGGTGGATTTCTTCAACCCAGAATCTCAATCGGTGGAATGGGCTACACCATGGTCGAGGACGGCAGAGAATTTCGCAAACGCAACCGGAGAACAAGGGTATCCCGGAGGAAAATTCTTCGATCCATTGGGATTTGCAGGAACTCTTAAAGATGGGGTTTACATTGCAGACACGGAGAAATTGGAGAGATTGAAGTTGGCAGAAATCAAGCATGCTAGGATCGCCATGTTAGCAATGCTCATCTTCTACTTTGAAGCTGGACAGGGGAAAACACCATTGGGTGCTCTTGGATTGTAA

Protein sequence

MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFYFEAGQGKTPLGALGL*

Homology

[Close]

BLAST of CsaV3_6G005340 vs. NCBI nr
Match: XP_004140973.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis sativus] >KGN46151.1 hypothetical protein Csa_005752 [Cucumis sativus])

HSP 1 Score: 520.0 bits (1338), Expect = 1.2e-143
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG
Sbjct: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CsaV3_6G005340 vs. NCBI nr
Match: XP_008441527.1 (PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo] >KAA0054917.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa] >TYK22706.1 chlorophyll a-b binding protein CP24 10A [Cucumis melo var. makuwa])

HSP 1 Score: 513.1 bits (1320), Expect = 1.4e-141
Identity = 249/255 (97.65%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVL GLGSPFLRGSSRTRTLLAGARG VNVVSSSKLV++AAAQPKKSW+PGVRG
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTLKDGVYI DTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

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BLAST of CsaV3_6G005340 vs. NCBI nr
Match: XP_031736148.1 (LOW QUALITY PROTEIN: chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucumis sativus])

HSP 1 Score: 513.1 bits (1320), Expect = 1.4e-141
Identity = 252/255 (98.82%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG
Sbjct: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGW ESKRWVDFF PESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWXESKRWVDFFXPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGK PLGALGL
Sbjct: 241 FEAGQGKXPLGALGL 255

[Close]

BLAST of CsaV3_6G005340 vs. NCBI nr
Match: XP_038885126.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic [Benincasa hispida])

HSP 1 Score: 501.1 bits (1289), Expect = 5.6e-138
Identity = 242/255 (94.90%), Postives = 247/255 (96.86%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVL GLGSPFLRG SRT+TLLAG RG VNVVSS KLV+VAAAQPKKSWLP V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGVRGGVNVVSSRKLVVVAAAQPKKSWLPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYI DTEKLERLKLAEIKHARIAMLAML FY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLTFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CsaV3_6G005340 vs. NCBI nr
Match: XP_022993917.1 (chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 500.4 bits (1287), Expect = 9.5e-138
Identity = 242/255 (94.90%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVL GLGSPFLRG SRT+TLLAGARG VNVV S KLVIVAAAQPKKSW+P V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYI DTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy Swiss-Prot
Match: P27524 (Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10A PE=3 SV=1)

HSP 1 Score: 433.0 bits (1112), Expect = 2.4e-120
Identity = 209/256 (81.64%), Postives = 227/256 (88.67%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGS-VNVVSSSKLVIVAAAQPKKSWLPGVR 60
           MA TS AVL GL S FL G ++++ LLA    + V   ++ K   V AA  KKSW+P VR
Sbjct: 1   MATTSAAVLNGLSSSFLTGGNKSQALLAAPLAARVGGAATPKRFTVLAAAAKKSWIPAVR 60

Query: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 120
           GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAW
Sbjct: 61  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAW 120

Query: 121 SGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTA 180
           SGIPWFEAGADPGAIAPFSFG+LLGTQL+LMGWVESKRWVDFF+P+SQSVEWATPWS+TA
Sbjct: 121 SGIPWFEAGADPGAIAPFSFGTLLGTQLILMGWVESKRWVDFFDPDSQSVEWATPWSKTA 180

Query: 181 ENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIF 240
           ENFAN TGEQGYPGGKFFDPL  AGTL +GVY+ DTEKLERLK+AEIKHAR+AMLAMLIF
Sbjct: 181 ENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKVAEIKHARLAMLAMLIF 240

Query: 241 YFEAGQGKTPLGALGL 256
           YFEAGQGKTPLGALGL
Sbjct: 241 YFEAGQGKTPLGALGL 256

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy Swiss-Prot
Match: P27525 (Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum OX=4081 GN=CAP10B PE=3 SV=1)

HSP 1 Score: 424.9 bits (1091), Expect = 6.6e-118
Identity = 207/257 (80.54%), Postives = 226/257 (87.94%), Query Frame = 0


Query: 1   MAATSG-AVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAA-QPKKSWLPGV 60
           M  TS  AVL GL S FL G  +T+ LL GA  +  V +  + V+ AAA  PKKSW+P V
Sbjct: 1   MTTTSATAVLNGLSSSFLTGGKKTQALL-GAHVTARVTTPKRFVVAAAAVAPKKSWIPAV 60

Query: 61  RGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQA 120
           + GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQA
Sbjct: 61  KSGGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQA 120

Query: 121 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 180
           WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFF+ +SQS++WATPWS+T
Sbjct: 121 WSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFDNDSQSIDWATPWSKT 180

Query: 181 AENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLI 240
           AENFAN TGEQGYPGGKFFDPL  AGTL +GVY+ DTEKLERLKLAEIKH+R+AMLAMLI
Sbjct: 181 AENFANFTGEQGYPGGKFFDPLALAGTLNNGVYVPDTEKLERLKLAEIKHSRLAMLAMLI 240

Query: 241 FYFEAGQGKTPLGALGL 256
           FYFEAGQGKTPLGALGL
Sbjct: 241 FYFEAGQGKTPLGALGL 256

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy Swiss-Prot
Match: P36494 (Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562 PE=2 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 4.8e-116
Identity = 203/259 (78.38%), Postives = 225/259 (86.87%), Query Frame = 0


Query: 2   AATSG-AVLTGLGSPFLRGSSRTRTLLAGARGSVNV---VSSSKLVIV-AAAQPKKSWLP 61
           AATS  A++ G  SPFL G  ++   L      V      +S KLV+V AAA PKKSW+P
Sbjct: 3   AATSATAIVNGFTSPFLSGGKKSSQSLLFVNSKVGAGVSTTSRKLVVVAAAAAPKKSWIP 62

Query: 62  GVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVG 121
            V+GGGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAM AV+GIFVG
Sbjct: 63  AVKGGGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMLAVLGIFVG 122

Query: 122 QAWSGIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWS 181
           QAW+GIPWFEAGADPGA+APFSFG+LLGTQLLLMGWVESKRWVDFF+P+SQSVEWATPWS
Sbjct: 123 QAWTGIPWFEAGADPGAVAPFSFGTLLGTQLLLMGWVESKRWVDFFDPDSQSVEWATPWS 182

Query: 182 RTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAM 241
           RTAENF+N+TGEQGYPGGKFFDPL  AGT+ +GVY  DT+KLERLKLAEIKHAR+AMLAM
Sbjct: 183 RTAENFSNSTGEQGYPGGKFFDPLSLAGTISNGVYNPDTDKLERLKLAEIKHARLAMLAM 242

Query: 242 LIFYFEAGQGKTPLGALGL 256
           LIFYFEAGQGKTPLGALGL
Sbjct: 243 LIFYFEAGQGKTPLGALGL 261

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy Swiss-Prot
Match: Q9C639 (Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LHCA5 PE=1 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 3.6e-31
Identity = 89/205 (43.41%), Postives = 115/205 (56.10%), Query Frame = 0


Query: 48  AQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 107
           A  + +WLPG      L  P +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM
Sbjct: 43  AVERATWLPG------LNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAM 102

Query: 108 AAVVGIFVGQ--AWSGI----PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRW 167
             V GI        +GI     W+EAGA       F F S   L+  Q LLMG+ E+KR+
Sbjct: 103 LGVAGILFTDLLRTTGIRNLPVWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRY 162

Query: 168 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKL 227
           +DF +P SQ+ E +  +   A   A    E GYPGG   +PLG A          D +  
Sbjct: 163 MDFVSPGSQAKEGSFFFGLEA---ALEGLEPGYPGGPLLNPLGLA---------KDVQNA 222

Query: 228 ERLKLAEIKHARIAMLAMLIFYFEA 244
              KL EIK+ R+AM+AML F+ +A
Sbjct: 223 HDWKLKEIKNGRLAMMAMLGFFVQA 224

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy Swiss-Prot
Match: P13869 (Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-30
Identity = 87/244 (35.66%), Postives = 122/244 (50.00%), Query Frame = 0


Query: 5   SGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRGGGNL 64
           +G+++    + FL G     +      GS +V  S+    VAA   +  W PG       
Sbjct: 23  NGSIVGATKASFLGGKRLRVSKFIAPVGSRSVAVSA----VAADPDRPLWFPG------S 82

Query: 65  VDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWSGI-- 124
             PEWLDGSLPGD+GFDPLGLG DP  LKW  +AEL+H RWAM    GIF+ +  + I  
Sbjct: 83  TPPEWLDGSLPGDFGFDPLGLGSDPESLKWNAQAELVHSRWAMLGAAGIFIPEFLTKIGV 142

Query: 125 ----PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRT 184
                W+ AG            +L   +L+L+GW E +RW D   P   + +   P    
Sbjct: 143 LNTPSWYTAGEQEYFT---DTTTLFVIELVLIGWAEGRRWADIIKPGCVNTDPIFP---- 202

Query: 185 AENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLI 243
             N    T + GYPGG +FDPLG+              K++ L+  EIK+ R+AMLA++ 
Sbjct: 203 -NNKLTGT-DVGYPGGLWFDPLGWGS--------GSPAKIKELRTKEIKNGRLAMLAVMG 239

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy TrEMBL
Match: A0A0A0KEF5 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa_6G057170 PE=3 SV=1)

HSP 1 Score: 520.0 bits (1338), Expect = 5.6e-144
Identity = 255/255 (100.00%), Postives = 255/255 (100.00%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG
Sbjct: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy TrEMBL
Match: A0A5D3DGI0 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00250 PE=3 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 6.8e-142
Identity = 249/255 (97.65%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVL GLGSPFLRGSSRTRTLLAGARG VNVVSSSKLV++AAAQPKKSW+PGVRG
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTLKDGVYI DTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy TrEMBL
Match: A0A1S3B4E4 (Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103485628 PE=3 SV=1)

HSP 1 Score: 513.1 bits (1320), Expect = 6.8e-142
Identity = 249/255 (97.65%), Postives = 252/255 (98.82%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVL GLGSPFLRGSSRTRTLLAGARG VNVVSSSKLV++AAAQPKKSW+PGVRG
Sbjct: 1   MAATSGAVLNGLGSPFLRGSSRTRTLLAGARGGVNVVSSSKLVVIAAAQPKKSWIPGVRG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTLKDGVYI DTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy TrEMBL
Match: A0A6J1JU87 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489772 PE=3 SV=1)

HSP 1 Score: 500.4 bits (1287), Expect = 4.6e-138
Identity = 242/255 (94.90%), Postives = 248/255 (97.25%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGAVL GLGSPFLRG SRT+TLLAGARG VNVV S KLVIVAAAQPKKSW+P V+G
Sbjct: 1   MAATSGAVLNGLGSPFLRGGSRTQTLLAGARGGVNVVGSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGNLVDPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS
Sbjct: 61  GGNLVDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGT+KDGVYI DTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTIKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALG+
Sbjct: 241 FEAGQGKTPLGALGV 255

[Close]

BLAST of CsaV3_6G005340 vs. ExPASy TrEMBL
Match: A0A6J1JEC2 (Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486120 PE=3 SV=1)

HSP 1 Score: 497.7 bits (1280), Expect = 3.0e-137
Identity = 240/255 (94.12%), Postives = 246/255 (96.47%), Query Frame = 0


Query: 1   MAATSGAVLTGLGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 60
           MAATSGA+L GLGSPFL G SRT+TLLAGARG VNVVSS KLVIVAAAQPKKSW+P V+G
Sbjct: 1   MAATSGALLNGLGSPFLHGGSRTQTLLAGARGGVNVVSSRKLVIVAAAQPKKSWIPAVKG 60

Query: 61  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 120
           GGN +DPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIF+GQAWS
Sbjct: 61  GGNFIDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFIGQAWS 120

Query: 121 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180
           GIPWFEAGADP AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE
Sbjct: 121 GIPWFEAGADPSAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 180

Query: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 240
           NFANATGEQGYPGGKFFDPLGFAGTLKDGVYI DTEKLERLKLAEIKHARIAMLAMLIFY
Sbjct: 181 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIPDTEKLERLKLAEIKHARIAMLAMLIFY 240

Query: 241 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 241 FEAGQGKTPLGALGL 255

[Close]

BLAST of CsaV3_6G005340 vs. TAIR 10
Match: AT1G15820.1 (light harvesting complex photosystem II subunit 6 )

HSP 1 Score: 422.5 bits (1085), Expect = 2.3e-118
Identity = 204/255 (80.00%), Postives = 222/255 (87.06%), Query Frame = 0


Query: 3   ATSGAVLTGLGSPFLRGSSRTRTLLAG--ARGSVNVVSSSKLVIVAAAQPKKSWLPGVRG 62
           A SGAVL+GLGS FL G  R  T LA     G+  V   + +V  AAAQPKKSW+P V+G
Sbjct: 4   AVSGAVLSGLGSSFLTGGKRGATALASGVGTGAQRVGRKTLIVAAAAAQPKKSWIPAVKG 63

Query: 63  GGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAWS 122
           GGN +DPEWLDGSLPGD+GFDPLGLGKDPAFLKWYREAELIHGRWAMAAV+GIFVGQAWS
Sbjct: 64  GGNFLDPEWLDGSLPGDFGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVLGIFVGQAWS 123

Query: 123 GIPWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWATPWSRTAE 182
           G+ WFEAGA P AIAPFSFGSLLGTQLLLMGWVESKRWVDFFNP+SQSVEWATPWS+TAE
Sbjct: 124 GVAWFEAGAQPDAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPDSQSVEWATPWSKTAE 183

Query: 183 NFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAMLAMLIFY 242
           NFAN TG+QGYPGG+FFDPLG AG  +DGVY  D EKLERLKLAEIKH+R+AM+AMLIFY
Sbjct: 184 NFANYTGDQGYPGGRFFDPLGLAGKNRDGVYEPDFEKLERLKLAEIKHSRLAMVAMLIFY 243

Query: 243 FEAGQGKTPLGALGL 256
           FEAGQGKTPLGALGL
Sbjct: 244 FEAGQGKTPLGALGL 258

[Close]

BLAST of CsaV3_6G005340 vs. TAIR 10
Match: AT1G45474.1 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-32
Identity = 89/205 (43.41%), Postives = 115/205 (56.10%), Query Frame = 0


Query: 48  AQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 107
           A  + +WLPG      L  P +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM
Sbjct: 43  AVERATWLPG------LNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAM 102

Query: 108 AAVVGIFVGQ--AWSGI----PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRW 167
             V GI        +GI     W+EAGA       F F S   L+  Q LLMG+ E+KR+
Sbjct: 103 LGVAGILFTDLLRTTGIRNLPVWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRY 162

Query: 168 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKL 227
           +DF +P SQ+ E +  +   A   A    E GYPGG   +PLG A          D +  
Sbjct: 163 MDFVSPGSQAKEGSFFFGLEA---ALEGLEPGYPGGPLLNPLGLA---------KDVQNA 222

Query: 228 ERLKLAEIKHARIAMLAMLIFYFEA 244
              KL EIK+ R+AM+AML F+ +A
Sbjct: 223 HDWKLKEIKNGRLAMMAMLGFFVQA 224

[Close]

BLAST of CsaV3_6G005340 vs. TAIR 10
Match: AT1G45474.2 (photosystem I light harvesting complex gene 5 )

HSP 1 Score: 136.7 bits (343), Expect = 2.6e-32
Identity = 89/205 (43.41%), Postives = 115/205 (56.10%), Query Frame = 0


Query: 48  AQPKKSWLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAM 107
           A  + +WLPG      L  P +LDG+L GDYGFDPLGLG+DP  LKWY +AEL+H R+AM
Sbjct: 43  AVERATWLPG------LNPPPYLDGNLAGDYGFDPLGLGEDPESLKWYVQAELVHSRFAM 102

Query: 108 AAVVGIFVGQ--AWSGI----PWFEAGADPGAIAPFSFGS---LLGTQLLLMGWVESKRW 167
             V GI        +GI     W+EAGA       F F S   L+  Q LLMG+ E+KR+
Sbjct: 103 LGVAGILFTDLLRTTGIRNLPVWYEAGA-----VKFDFASTKTLIVVQFLLMGFAETKRY 162

Query: 168 VDFFNPESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKL 227
           +DF +P SQ+ E +  +   A   A    E GYPGG   +PLG A          D +  
Sbjct: 163 MDFVSPGSQAKEGSFFFGLEA---ALEGLEPGYPGGPLLNPLGLA---------KDVQNA 222

Query: 228 ERLKLAEIKHARIAMLAMLIFYFEA 244
              KL EIK+ R+AM+AML F+ +A
Sbjct: 223 HDWKLKEIKNGRLAMMAMLGFFVQA 224

[Close]

BLAST of CsaV3_6G005340 vs. TAIR 10
Match: AT1G19150.1 (photosystem I light harvesting complex gene 6 )

HSP 1 Score: 134.0 bits (336), Expect = 1.7e-31
Identity = 92/260 (35.38%), Postives = 130/260 (50.00%), Query Frame = 0


Query: 1   MAATSGAVLTG---LGSPFLRGSSRTRTLLAGARGSVNVVSSSKLVIVAAAQPKKS---- 60
           MA    + LT    L +  ++  ++ R  +A    +   +   +LV+V A +   S    
Sbjct: 1   MAFAIASALTSTLTLSTSRVQNPTQRRPHVASTSSTGGRLMRERLVVVRAGKEVSSVCEP 60

Query: 61  -------WLPGVRGGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWA 120
                  W PG         PEWLDGSLPGD+GFDPLGLG DP  LKW+ +AELIH RWA
Sbjct: 61  LPPDRPLWFPGSS------PPEWLDGSLPGDFGFDPLGLGSDPDTLKWFAQAELIHSRWA 120

Query: 121 MAAVVGIFVGQAWSGIPWFE--AGADPGAIAPFSFG-SLLGTQLLLMGWVESKRWVDFFN 180
           M AV GI + +    + + E  +  D G+   F+   +L   Q++LMGW E +RW D   
Sbjct: 121 MLAVTGIIIPECLERLGFIENFSWYDAGSREYFADSTTLFVAQMVLMGWAEGRRWADLIK 180

Query: 181 PESQSVEWATPWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKL 240
           P S  +E   P      +  N   + GYPGG +FD + +     + V +        L+ 
Sbjct: 181 PGSVDIEPKYP------HKVNPKPDVGYPGGLWFDFMMWGRGSPEPVMV--------LRT 240

Query: 241 AEIKHARIAMLAMLIFYFEA 244
            EIK+ R+AMLA L F F+A
Sbjct: 241 KEIKNGRLAMLAFLGFCFQA 240

[Close]

BLAST of CsaV3_6G005340 vs. TAIR 10
Match: AT3G61470.1 (photosystem I light harvesting complex gene 2 )

HSP 1 Score: 131.7 bits (330), Expect = 8.2e-31
Identity = 87/249 (34.94%), Postives = 123/249 (49.40%), Query Frame = 0


Query: 5   SGAVLTGLGSPFLRGSSRTR-----TLLAGARGSVNVVSSSKLVIVAAAQPKKSWLPGVR 64
           + + +  + SP   G  + R     T+ A +R   +V +      VAA   +  W PG  
Sbjct: 7   ASSAIAAISSPSFLGGKKLRLKKKLTVPAVSRPDASVRA------VAADPDRPIWFPG-- 66

Query: 65  GGGNLVDPEWLDGSLPGDYGFDPLGLGKDPAFLKWYREAELIHGRWAMAAVVGIFVGQAW 124
                  PEWLDGSLPGD+GFDPLGL  DP  LKW  +AE++H RWAM    GIF+ +  
Sbjct: 67  ----STPPEWLDGSLPGDFGFDPLGLSSDPDSLKWNVQAEIVHCRWAMLGAAGIFIPEFL 126

Query: 125 SGI------PWFEAGADPGAIAPFSFGSLLGTQLLLMGWVESKRWVDFFNPESQSVEWAT 184
           + I       W+ AG            +L   +L+L+GW E +RW D   P S + +   
Sbjct: 127 TKIGILNTPSWYTAGEQEYFT---DKTTLFVVELILIGWAEGRRWADIIKPGSVNTDPVF 186

Query: 185 PWSRTAENFANATGEQGYPGGKFFDPLGFAGTLKDGVYIADTEKLERLKLAEIKHARIAM 243
           P      N    T + GYPGG +FDPLG+              KL+ L+  EIK+ R+AM
Sbjct: 187 P-----NNKLTGT-DVGYPGGLWFDPLGWGS--------GSPAKLKELRTKEIKNGRLAM 226

The following BLAST results are available for this feature:

BLAST of CsaV3_6G005340 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004140973.1	1.2e-143	100.00	chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis sativus] >KGN46...	[more]
XP_008441527.1	1.4e-141	97.65	PREDICTED: chlorophyll a-b binding protein CP24 10A, chloroplastic [Cucumis melo...	[more]
XP_031736148.1	1.4e-141	98.82	LOW QUALITY PROTEIN: chlorophyll a-b binding protein CP24 10A, chloroplastic-lik...	[more]
XP_038885126.1	5.6e-138	94.90	chlorophyll a-b binding protein CP24 10A, chloroplastic [Benincasa hispida]	[more]
XP_022993917.1	9.5e-138	94.90	chlorophyll a-b binding protein CP24 10A, chloroplastic-like [Cucurbita maxima]	[more]

BLAST of CsaV3_6G005340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27524	2.4e-120	81.64	Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum ...	[more]
P27525	6.6e-118	80.54	Chlorophyll a-b binding protein CP24 10B, chloroplastic OS=Solanum lycopersicum ...	[more]
P36494	4.8e-116	78.38	Chlorophyll a-b binding protein CP24, chloroplastic OS=Spinacia oleracea OX=3562...	[more]
Q9C639	3.6e-31	43.41	Photosystem I chlorophyll a/b-binding protein 5, chloroplastic OS=Arabidopsis th...	[more]
P13869	1.0e-30	35.66	Chlorophyll a-b binding protein, chloroplastic OS=Petunia hybrida OX=4102 PE=2 S...	[more]

BLAST of CsaV3_6G005340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KEF5	5.6e-144	100.00	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis sativus OX=3659 GN=Csa...	[more]
A0A5D3DGI0	6.8e-142	97.65	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo var. makuwa OX=11...	[more]
A0A1S3B4E4	6.8e-142	97.65	Chlorophyll a-b binding protein, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1JU87	4.6e-138	94.90	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]
A0A6J1JEC2	3.0e-137	94.12	Chlorophyll a-b binding protein, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CsaV3_6G005340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15820.1	2.3e-118	80.00	light harvesting complex photosystem II subunit 6	[more]
AT1G45474.1	2.6e-32	43.41	photosystem I light harvesting complex gene 5	[more]
AT1G45474.2	2.6e-32	43.41	photosystem I light harvesting complex gene 5	[more]
AT1G19150.1	1.7e-31	35.38	photosystem I light harvesting complex gene 6	[more]
AT3G61470.1	8.2e-31	34.94	photosystem I light harvesting complex gene 2	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 67..243 e-value: 1.5E-48 score: 165.4
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10	Chlorophyll a/b binding protein domain	coord: 67..254 e-value: 9.4E-54 score: 184.2
None	No IPR available	PANTHER	PTHR21649:SF107	CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC	coord: 2..255
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 64..255
IPR001344	Chlorophyll A-B binding protein, plant and chromista	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 2..255

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G005340.1	CsaV3_6G005340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009765	photosynthesis, light harvesting
cellular_component	GO:0016020	membrane