CsaV3_6G005310 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G005310
Typegene
OrganismCucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Descriptiontranscription factor VIP1-like
Locationchr6: 4512881 .. 4513069 (+)
RNA-Seq ExpressionCsaV3_6G005310
SyntenyCsaV3_6G005310
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGTCGATTCCTTTAATTCCAAGTCCCCTGAAGACGCCTCTACCACAAAACCTAGGGCTGCAAACGGTAACTCCGCTTCCTTCTTCAATTCTCACTATCGGAGCTTATCGATGGATTCAGACTTCTTCGAGGGCTTGGGGATGGCCGGAGATGGAAGTGACGGTGAAATACTTGGGGGAGAGTGA

mRNA sequence

ATGGCCGTCGATTCCTTTAATTCCAAGTCCCCTGAAGACGCCTCTACCACAAAACCTAGGGCTGCAAACGGTAACTCCGCTTCCTTCTTCAATTCTCACTATCGGAGCTTATCGATGGATTCAGACTTCTTCGAGGGCTTGGGGATGGCCGGAGATGGAAGTGACGGTGAAATACTTGGGGGAGAGTGA

Coding sequence (CDS)

ATGGCCGTCGATTCCTTTAATTCCAAGTCCCCTGAAGACGCCTCTACCACAAAACCTAGGGCTGCAAACGGTAACTCCGCTTCCTTCTTCAATTCTCACTATCGGAGCTTATCGATGGATTCAGACTTCTTCGAGGGCTTGGGGATGGCCGGAGATGGAAGTGACGGTGAAATACTTGGGGGAGAGTGA

Protein sequence

MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILGGE*
Homology
BLAST of CsaV3_6G005310 vs. NCBI nr
Match: KAE8646671.1 (hypothetical protein Csa_004862 [Cucumis sativus] >KAE8652906.1 hypothetical protein Csa_022679 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24
Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0

Query: 1  MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG 60
          MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG
Sbjct: 1  MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG 60

Query: 61 GE 63
          GE
Sbjct: 61 GE 62

BLAST of CsaV3_6G005310 vs. NCBI nr
Match: XP_008441523.1 (PREDICTED: transcription factor VIP1-like [Cucumis melo] >KAA0054921.1 transcription factor VIP1-like [Cucumis melo var. makuwa] >TYK22710.1 transcription factor VIP1-like [Cucumis melo var. makuwa])

HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG 60
           MAVDSFNSKSPEDASTTKPRA NGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEIL 
Sbjct: 99  MAVDSFNSKSPEDASTTKPRAGNGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILA 158

Query: 61  G 62
           G
Sbjct: 159 G 159

BLAST of CsaV3_6G005310 vs. NCBI nr
Match: XP_038886256.1 (transcription factor VIP1-like [Benincasa hispida])

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG 60
           MAVDSFNSKSPEDAS TKPRA NGNSAS FNSHYRSLSMDSDFFEGLGMAGDGSDGE+L 
Sbjct: 80  MAVDSFNSKSPEDASATKPRAGNGNSASLFNSHYRSLSMDSDFFEGLGMAGDGSDGEVLA 139

Query: 61  G 62
           G
Sbjct: 140 G 140

BLAST of CsaV3_6G005310 vs. NCBI nr
Match: XP_023548041.1 (transcription factor VIP1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSAS-FFNSHYRSLSMDSDFFEGLGMAGDGSDGEIL 60
           MA+DSFNSKSP+DAS +KP+A+N  SAS FF +H RSLSMDSDFF+GLG+AGDGSDGE+L
Sbjct: 80  MALDSFNSKSPDDASASKPKASNDTSASDFFGAHCRSLSMDSDFFDGLGIAGDGSDGEVL 139

Query: 61  GG 62
           GG
Sbjct: 140 GG 141

BLAST of CsaV3_6G005310 vs. NCBI nr
Match: XP_022956511.1 (transcription factor VIP1-like [Cucurbita moschata])

HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSAS-FFNSHYRSLSMDSDFFEGLGMAGDGSDGEIL 60
           MA+DSFNSKSP+DAS +KP+A+N  SAS FF +H RSLSMDSDFF+GLG+AGDGSDGE+L
Sbjct: 80  MALDSFNSKSPDDASASKPKASNDTSASDFFGAHCRSLSMDSDFFDGLGIAGDGSDGEVL 139

Query: 61  GG 62
           GG
Sbjct: 140 GG 141

BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A0A0KBC6 (BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057150 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG 60
           MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG
Sbjct: 99  MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG 158

Query: 61  G 62
           G
Sbjct: 159 G 159

BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A5A7UMX9 (Transcription factor VIP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00300 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG 60
           MAVDSFNSKSPEDASTTKPRA NGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEIL 
Sbjct: 99  MAVDSFNSKSPEDASTTKPRAGNGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILA 158

Query: 61  G 62
           G
Sbjct: 159 G 159

BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A1S3B3P0 (transcription factor VIP1-like OS=Cucumis melo OX=3656 GN=LOC103485625 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23
Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILG 60
           MAVDSFNSKSPEDASTTKPRA NGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEIL 
Sbjct: 99  MAVDSFNSKSPEDASTTKPRAGNGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILA 158

Query: 61  G 62
           G
Sbjct: 159 G 159

BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A6J1GWS4 (transcription factor VIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111458227 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 7.1e-16
Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSAS-FFNSHYRSLSMDSDFFEGLGMAGDGSDGEIL 60
           MA+DSFNSKSP+DAS +KP+A+N  SAS FF +H RSLSMDSDFF+GLG+AGDGSDGE+L
Sbjct: 80  MALDSFNSKSPDDASASKPKASNDTSASDFFGAHCRSLSMDSDFFDGLGIAGDGSDGEVL 139

Query: 61  GG 62
           GG
Sbjct: 140 GG 141

BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A6J1JRY6 (transcription factor VIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111487272 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15
Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 0

Query: 1   MAVDSFNSKSPEDASTTKPRAANGNSAS-FFNSHYRSLSMDSDFFEGLGMAGDGSDGEIL 60
           MA+DSFNSKSP+DAS +KP+A+   SAS FF +H RSLSMDSDFF+GLG+AGDGSDGE+L
Sbjct: 80  MALDSFNSKSPDDASASKPKASKDTSASDFFGAHCRSLSMDSDFFDGLGIAGDGSDGEVL 139

Query: 61  GG 62
           GG
Sbjct: 140 GG 141

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8646671.11.7e-24100.00hypothetical protein Csa_004862 [Cucumis sativus] >KAE8652906.1 hypothetical pro... [more]
XP_008441523.19.5e-2396.72PREDICTED: transcription factor VIP1-like [Cucumis melo] >KAA0054921.1 transcrip... [more]
XP_038886256.12.3e-2191.80transcription factor VIP1-like [Benincasa hispida][more]
XP_023548041.11.5e-1575.81transcription factor VIP1-like [Cucurbita pepo subsp. pepo][more]
XP_022956511.11.5e-1575.81transcription factor VIP1-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KBC63.2e-24100.00BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057150 PE=4 S... [more]
A0A5A7UMX94.6e-2396.72Transcription factor VIP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A1S3B3P04.6e-2396.72transcription factor VIP1-like OS=Cucumis melo OX=3656 GN=LOC103485625 PE=4 SV=1[more]
A0A6J1GWS47.1e-1675.81transcription factor VIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111458227 PE=... [more]
A0A6J1JRY63.5e-1574.19transcription factor VIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111487272 PE=4 ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G005310.1CsaV3_6G005310.1mRNA