CsaV3_6G005310 (gene) Cucumber (Chinese Long) v3
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCCGTCGATTCCTTTAATTCCAAGTCCCCTGAAGACGCCTCTACCACAAAACCTAGGGCTGCAAACGGTAACTCCGCTTCCTTCTTCAATTCTCACTATCGGAGCTTATCGATGGATTCAGACTTCTTCGAGGGCTTGGGGATGGCCGGAGATGGAAGTGACGGTGAAATACTTGGGGGAGAGTGA ATGGCCGTCGATTCCTTTAATTCCAAGTCCCCTGAAGACGCCTCTACCACAAAACCTAGGGCTGCAAACGGTAACTCCGCTTCCTTCTTCAATTCTCACTATCGGAGCTTATCGATGGATTCAGACTTCTTCGAGGGCTTGGGGATGGCCGGAGATGGAAGTGACGGTGAAATACTTGGGGGAGAGTGA ATGGCCGTCGATTCCTTTAATTCCAAGTCCCCTGAAGACGCCTCTACCACAAAACCTAGGGCTGCAAACGGTAACTCCGCTTCCTTCTTCAATTCTCACTATCGGAGCTTATCGATGGATTCAGACTTCTTCGAGGGCTTGGGGATGGCCGGAGATGGAAGTGACGGTGAAATACTTGGGGGAGAGTGA MAVDSFNSKSPEDASTTKPRAANGNSASFFNSHYRSLSMDSDFFEGLGMAGDGSDGEILGGE* Homology
BLAST of CsaV3_6G005310 vs. NCBI nr
Match: KAE8646671.1 (hypothetical protein Csa_004862 [Cucumis sativus] >KAE8652906.1 hypothetical protein Csa_022679 [Cucumis sativus]) HSP 1 Score: 122.1 bits (305), Expect = 1.7e-24 Identity = 62/62 (100.00%), Postives = 62/62 (100.00%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. NCBI nr
Match: XP_008441523.1 (PREDICTED: transcription factor VIP1-like [Cucumis melo] >KAA0054921.1 transcription factor VIP1-like [Cucumis melo var. makuwa] >TYK22710.1 transcription factor VIP1-like [Cucumis melo var. makuwa]) HSP 1 Score: 116.3 bits (290), Expect = 9.5e-23 Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. NCBI nr
Match: XP_038886256.1 (transcription factor VIP1-like [Benincasa hispida]) HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21 Identity = 56/61 (91.80%), Postives = 57/61 (93.44%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. NCBI nr
Match: XP_023548041.1 (transcription factor VIP1-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15 Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. NCBI nr
Match: XP_022956511.1 (transcription factor VIP1-like [Cucurbita moschata]) HSP 1 Score: 92.4 bits (228), Expect = 1.5e-15 Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A0A0KBC6 (BZIP domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G057150 PE=4 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 3.2e-24 Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A5A7UMX9 (Transcription factor VIP1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00300 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23 Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A1S3B3P0 (transcription factor VIP1-like OS=Cucumis melo OX=3656 GN=LOC103485625 PE=4 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 4.6e-23 Identity = 59/61 (96.72%), Postives = 59/61 (96.72%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A6J1GWS4 (transcription factor VIP1-like OS=Cucurbita moschata OX=3662 GN=LOC111458227 PE=4 SV=1) HSP 1 Score: 92.4 bits (228), Expect = 7.1e-16 Identity = 47/62 (75.81%), Postives = 56/62 (90.32%), Query Frame = 0
BLAST of CsaV3_6G005310 vs. ExPASy TrEMBL
Match: A0A6J1JRY6 (transcription factor VIP1-like OS=Cucurbita maxima OX=3661 GN=LOC111487272 PE=4 SV=1) HSP 1 Score: 90.1 bits (222), Expect = 3.5e-15 Identity = 46/62 (74.19%), Postives = 55/62 (88.71%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
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