CsaV3_6G005290 (gene) Cucumber (Chinese Long) v3

Overview


Name	CsaV3_6G005290
Type	gene
Organism	Cucumis sativus L. var. sativus cv. Chinese Long (Cucumber (Chinese Long) v3)
Description	U6 snRNA-associated Sm-like protein LSm3
Location	chr6: 4473408 .. 4474856 (+)
RNA-Seq Expression	CsaV3_6G005290
Synteny	CsaV3_6G005290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCGTATTTACGTCAAGCTTCGCTCTGACGCGAACTCCGCGGCAAACTCCATGTACATCCTCCCAAATTACTTCTCTCTTTATCCCTTTATCATCTTTCTTTCTTTTCTCTAATTATTATGTCTCTCTCTATCTCTCTGTCCTCTTTAATTGACAACCCCCCAATTGTTATTGTTTTTTCTTTCGATCAAATTAATGTCTTGGAGAATTAGGGTTTTGTAATTGTTTGACTTTCTTGACGGGGTTCCCTTGAAATTTCATTTTGTTGAAAAAGGCGATACTTTAGCTTCTTCCAGTAAGTAATTAACCTTTCTTCTATTCAGTTTTTGCGTTTGGGATGGGGGCAGGGGCTGCTTTCGAACTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAAGGCGTCAAAGCTAGAGCAGACGCGTTTCTCGTAAATCTTACCATTGGAGAATAAGTAGGAAGATGACTATTTTAGCATGGTCATTATCTACATAGATGTTCTCCGTTGTGAATGTGTTTAACAGAGGCTCCAAATATTACAAATATTTAACGAAAATGGTCAATTGTTTTAGATTAAGATGTTGATTATGATTAGTAGCTGATCACTCTGTTGCATTTCTTTTAGTTTTGAGATGCTATTGTGAATACAAAATGTTTAGCTTTTCATTTTTTTATATCATTGATTGCCGAGATTTTCCTTTCCTGGAGTTTTAACTGCATTCTGTTGCTGGCTATCATGTTTTGCAGGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGGTATGCTTGTTTTCTTCATTAGGGTTGCTTGTAACTTTGTACCACTCTTGGTTTTTAATTCGAATGTAGTAGAGTTAAATAATTTACCTATGAGAACAGTTCAAGTGCATACTAGTTGGTCAGAACGTCACGGATTAAAAAAACGTGTCTTTGTATTTAACTCCATTTCCATGCTATGAAACAACTATGTACCACATACTAGAGTCCATTCCATATGAACTCAATTTATAACCATGGCTAGAAAACAAAACTACAGTGCAGAAGATATTTGAATGCTCTCTTATTTTCAATTAAATCAGGTGAAGTTCAAAACCAAAAGAACAAAAGAAAAGAAAATCCCTGTCCCTCAAGCTGCTTCATTGAGTCTATCCCATACTTCATATGCCTGATACCATATTTTCCTTGTATATACTTTAATTGAAATTTCACTTATTTGTATTTGTCTATTTTCCTTTCCAGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

mRNA sequence

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCTTTTTGCGTTTGGGATGGGGGCAGGGGCTGCTTTCGAACTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAAGGCGTCAAAGCTAGAGCAGACGCGTTTCTCGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Coding sequence (CDS)

ATGGCGACCGAAGAAGAAAGCACTGTTAAGGAGCCTTTGGATCTCATAAGGTTGAGTCTTGACGAGCTTTTTGCGTTTGGGATGGGGGCAGGGGCTGCTTTCGAACTTCTCTATTTTTGGGGGAATGGAAGTGCCCTAATGGTGAAAGGCGTCAAAGCTAGAGCAGACGCGTTTCTCGCTTATGATCAGCATCTTAATATGATTCTAGGTGATGTCGAAGAAAGTGTTACTACAGTGGAAATCGATGATGAGACATATGAAGAAATTGTTCGGACATCCAGGCGAACGGTTCCGTTTCTCTTTGTTAGAGGAGATGGTGTCATATTGGTTTCACCTCCACTGAGGACTGTGTAA

Protein sequence

MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFLAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV*

Homology

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: KAE8646670.1 (hypothetical protein Csa_005124 [Cucumis sativus])

HSP 1 Score: 230.3 bits (586), Expect = 8.4e-57
Identity = 117/117 (100.00%), Postives = 117/117 (100.00%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFLA 60
           MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFLA
Sbjct: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFLA 60

Query: 61  YDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 118
           YDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV
Sbjct: 61  YDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLRTV 117

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: KAE8652911.1 (hypothetical protein Csa_022658 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 102/125 (81.60%), Postives = 104/125 (83.20%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGA--------AFELLYFWGNGSALMVKGVK 60
           MATEEESTVKEPLDLIRLSLDE     + + A         F    F GNGSALMVKGVK
Sbjct: 1   MATEEESTVKEPLDLIRLSLDERIYVKLRSDANSAANSMGCFRTSLFLGNGSALMVKGVK 60

Query: 61  ARADAFLAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 118
           ARADAFLAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP
Sbjct: 61  ARADAFLAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSP 120

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: XP_004140968.3 (LOW QUALITY PROTEIN: sm-like protein LSM3B [Cucumis sativus] >XP_031745455.1 LOW QUALITY PROTEIN: sm-like protein LSM3B [Cucumis sativus])

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-31
Identity = 86/122 (70.49%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDXELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: XP_008441520.1 (PREDICTED: sm-like protein LSM3B [Cucumis melo] >KAA0054950.1 sm-like protein LSM3A [Cucumis melo var. makuwa] >TYK22739.1 sm-like protein LSM3A [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 7.9e-31
Identity = 86/122 (70.49%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. NCBI nr
Match: XP_022133461.1 (sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022952859.1 sm-like protein LSM3A [Cucurbita moschata] >XP_022990502.1 sm-like protein LSM3A [Cucurbita maxima] >XP_022993940.1 sm-like protein LSM3A [Cucurbita maxima] >XP_023548062.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_023551427.1 sm-like protein LSM3A [Cucurbita pepo subsp. pepo] >XP_038886358.1 sm-like protein LSM3A [Benincasa hispida] >KAG6578889.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia] >KAG7032866.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. argyrosperma] >KAG6602182.1 Sm-like protein LSM3A, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 141.7 bits (356), Expect = 3.9e-30
Identity = 85/122 (69.67%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy Swiss-Prot
Match: Q9C6K5 (Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.0e-28
Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           M+ EEE+TV+EPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MSGEEEATVREPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               A+DQHLNMILGDVEE++TTVEIDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy Swiss-Prot
Match: Q9LMN4 (Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 1.7e-28
Identity = 72/121 (59.50%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           M+ EE++TV+EPLDLIRLS++             E +Y            VK R+D  L 
Sbjct: 1   MSVEEDATVREPLDLIRLSIE-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               A+DQHLNMILGDVEE +TT+EIDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy Swiss-Prot
Match: Q32PE9 (U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-23
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL-----AY 66
           +TV+EPLDLIRLSLD             E +Y            VK R D  L     AY
Sbjct: 12  NTVEEPLDLIRLSLD-------------ERIY------------VKMRNDRELRGRLHAY 71

Query: 67  DQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 116
           DQHLNMILGDVEE+VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  DQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy Swiss-Prot
Match: P62310 (U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-23
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL-----AY 66
           +TV+EPLDLIRLSLD             E +Y            VK R D  L     AY
Sbjct: 12  NTVEEPLDLIRLSLD-------------ERIY------------VKMRNDRELRGRLHAY 71

Query: 67  DQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 116
           DQHLNMILGDVEE+VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  DQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy Swiss-Prot
Match: P62311 (U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 SV=2)

HSP 1 Score: 109.8 bits (273), Expect = 2.2e-23
Identity = 63/114 (55.26%), Postives = 76/114 (66.67%), Query Frame = 0


Query: 7   STVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL-----AY 66
           +TV+EPLDLIRLSLD             E +Y            VK R D  L     AY
Sbjct: 12  NTVEEPLDLIRLSLD-------------ERIY------------VKMRNDRELRGRLHAY 71

Query: 67  DQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 116
           DQHLNMILGDVEE+VTT+EID+ETYEEI ++++R +P LFVRGDGV+LV+PPLR
Sbjct: 72  DQHLNMILGDVEETVTTIEIDEETYEEIYKSTKRNIPMLFVRGDGVVLVAPPLR 100

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy TrEMBL
Match: A0A5D3DHH3 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis melo var. makuwa OX=1194695 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 86/122 (70.49%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy TrEMBL
Match: A0A0A0K8S0 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis sativus OX=3659 GN=LSM3 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 86/122 (70.49%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy TrEMBL
Match: A0A1S3B4E1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis melo OX=3656 GN=LOC103485621 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 3.8e-31
Identity = 86/122 (70.49%), Postives = 88/122 (72.13%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy TrEMBL
Match: A0A6J1JZX1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC111489789 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 85/122 (69.67%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. ExPASy TrEMBL
Match: A0A6J1FGZ1 (U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111445386 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.9e-30
Identity = 85/122 (69.67%), Postives = 87/122 (71.31%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           MATEEESTVKEPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MATEEESTVKEPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 118
               AYDQHLNMILGDVEE VTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 97

[Close]

BLAST of CsaV3_6G005290 vs. TAIR 10
Match: AT1G76860.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 127.5 bits (319), Expect = 7.2e-30
Identity = 74/121 (61.16%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           M+ EEE+TV+EPLDLIRLSLD             E +Y            VK R+D  L 
Sbjct: 1   MSGEEEATVREPLDLIRLSLD-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               A+DQHLNMILGDVEE++TTVEIDDETYEEIVRT++RT+ FLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAFDQHLNMILGDVEETITTVEIDDETYEEIVRTTKRTIEFLFVRGDGVILVSPPLR 96

[Close]

BLAST of CsaV3_6G005290 vs. TAIR 10
Match: AT1G21190.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29
Identity = 72/121 (59.50%), Postives = 85/121 (70.25%), Query Frame = 0


Query: 1   MATEEESTVKEPLDLIRLSLDELFAFGMGAGAAFELLYFWGNGSALMVKGVKARADAFL- 60
           M+ EE++TV+EPLDLIRLS++             E +Y            VK R+D  L 
Sbjct: 1   MSVEEDATVREPLDLIRLSIE-------------ERIY------------VKLRSDRELR 60

Query: 61  ----AYDQHLNMILGDVEESVTTVEIDDETYEEIVRTSRRTVPFLFVRGDGVILVSPPLR 117
               A+DQHLNMILGDVEE +TT+EIDDETYEEIVRT++RTVPFLFVRGDGVILVSPPLR
Sbjct: 61  GKLHAFDQHLNMILGDVEEVITTIEIDDETYEEIVRTTKRTVPFLFVRGDGVILVSPPLR 96

The following BLAST results are available for this feature:

BLAST of CsaV3_6G005290 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8646670.1	8.4e-57	100.00	hypothetical protein Csa_005124 [Cucumis sativus]	[more]
KAE8652911.1	1.4e-43	81.60	hypothetical protein Csa_022658 [Cucumis sativus]	[more]
XP_004140968.3	7.9e-31	70.49	LOW QUALITY PROTEIN: sm-like protein LSM3B [Cucumis sativus] >XP_031745455.1 LOW...	[more]
XP_008441520.1	7.9e-31	70.49	PREDICTED: sm-like protein LSM3B [Cucumis melo] >KAA0054950.1 sm-like protein LS...	[more]
XP_022133461.1	3.9e-30	69.67	sm-like protein LSM3A [Momordica charantia] >XP_022939502.1 sm-like protein LSM3...	[more]

BLAST of CsaV3_6G005290 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C6K5	1.0e-28	61.16	Sm-like protein LSM3B OS=Arabidopsis thaliana OX=3702 GN=LSM3B PE=1 SV=1	[more]
Q9LMN4	1.7e-28	59.50	Sm-like protein LSM3A OS=Arabidopsis thaliana OX=3702 GN=LSM3A PE=1 SV=1	[more]
Q32PE9	2.2e-23	55.26	U6 snRNA-associated Sm-like protein LSm3 OS=Bos taurus OX=9913 GN=LSM3 PE=3 SV=3	[more]
P62310	2.2e-23	55.26	U6 snRNA-associated Sm-like protein LSm3 OS=Homo sapiens OX=9606 GN=LSM3 PE=1 SV...	[more]
P62311	2.2e-23	55.26	U6 snRNA-associated Sm-like protein LSm3 OS=Mus musculus OX=10090 GN=Lsm3 PE=1 S...	[more]

BLAST of CsaV3_6G005290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DHH3	3.8e-31	70.49	U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A0A0K8S0	3.8e-31	70.49	U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis sativus OX=3659 GN=LSM3 PE=3...	[more]
A0A1S3B4E1	3.8e-31	70.49	U6 snRNA-associated Sm-like protein LSm3 OS=Cucumis melo OX=3656 GN=LOC103485621...	[more]
A0A6J1JZX1	1.9e-30	69.67	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1FGZ1	1.9e-30	69.67	U6 snRNA-associated Sm-like protein LSm3 OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]

BLAST of CsaV3_6G005290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G76860.1	7.2e-30	61.16	Small nuclear ribonucleoprotein family protein	[more]
AT1G21190.1	1.2e-29	59.50	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (Chinese Long) v3
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 60..112 e-value: 8.9E-8 score: 31.7
None	No IPR available	GENE3D	2.30.30.100		coord: 39..114 e-value: 6.1E-16 score: 60.0
None	No IPR available	PANTHER	PTHR13110:SF13	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 58..117
None	No IPR available	PANTHER	PTHR13110:SF13	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..23
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 58..117
IPR040002	U6 snRNA-associated Sm-like protein Lsm3	PANTHER	PTHR13110	U6 SNRNA-ASSOCIATED SM-LIKE PROTEIN LSM3	coord: 1..23
IPR034105	Sm-like protein Lsm3	CDD	cd01730	LSm3	coord: 11..112 e-value: 1.3559E-37 score: 120.023
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 58..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_6G005290.1	CsaV3_6G005290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
molecular_function	GO:0003723	RNA binding